Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04775 and HMPREF1058_RS04770 are separated by 169 nucleotides HMPREF1058_RS04770 and HMPREF1058_RS04765 are separated by 53 nucleotides HMPREF1058_RS04765 and HMPREF1058_RS21655 are separated by 89 nucleotides
HMPREF1058_RS04775: HMPREF1058_RS04775 - hypothetical protein, at 319,777 to 320,232
_RS04775
HMPREF1058_RS04770: HMPREF1058_RS04770 - hypothetical protein, at 320,402 to 320,836
_RS04770
HMPREF1058_RS04765: HMPREF1058_RS04765 - hypothetical protein, at 320,890 to 321,321
_RS04765
HMPREF1058_RS21655: HMPREF1058_RS21655 - hypothetical protein, at 321,411 to 321,872
_RS21655
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 319.945 kb on + strand, within HMPREF1058_RS04775 at 319.950 kb on - strand, within HMPREF1058_RS04775 at 319.950 kb on - strand, within HMPREF1058_RS04775 at 320.040 kb on + strand, within HMPREF1058_RS04775 at 320.050 kb on + strand, within HMPREF1058_RS04775 at 320.069 kb on + strand, within HMPREF1058_RS04775 at 320.070 kb on - strand, within HMPREF1058_RS04775 at 320.072 kb on - strand, within HMPREF1058_RS04775 at 320.090 kb on + strand, within HMPREF1058_RS04775 at 320.090 kb on + strand, within HMPREF1058_RS04775 at 320.120 kb on - strand, within HMPREF1058_RS04775 at 320.146 kb on + strand, within HMPREF1058_RS04775 at 320.147 kb on - strand, within HMPREF1058_RS04775 at 320.301 kb on - strand at 320.307 kb on + strand at 320.326 kb on - strand at 320.326 kb on - strand at 320.448 kb on + strand, within HMPREF1058_RS04770 at 320.510 kb on - strand, within HMPREF1058_RS04770 at 320.580 kb on - strand, within HMPREF1058_RS04770 at 320.592 kb on + strand, within HMPREF1058_RS04770 at 320.615 kb on - strand, within HMPREF1058_RS04770 at 320.629 kb on - strand, within HMPREF1058_RS04770 at 320.649 kb on + strand, within HMPREF1058_RS04770 at 320.650 kb on - strand, within HMPREF1058_RS04770 at 320.671 kb on + strand, within HMPREF1058_RS04770 at 320.672 kb on - strand, within HMPREF1058_RS04770 at 320.682 kb on + strand, within HMPREF1058_RS04770 at 320.682 kb on + strand, within HMPREF1058_RS04770 at 320.689 kb on - strand, within HMPREF1058_RS04770 at 320.713 kb on + strand, within HMPREF1058_RS04770 at 320.841 kb on - strand at 320.865 kb on + strand at 320.876 kb on - strand at 320.877 kb on + strand at 320.878 kb on - strand at 320.878 kb on - strand at 320.951 kb on + strand, within HMPREF1058_RS04765 at 321.001 kb on - strand, within HMPREF1058_RS04765 at 321.007 kb on + strand, within HMPREF1058_RS04765 at 321.010 kb on - strand, within HMPREF1058_RS04765 at 321.010 kb on - strand, within HMPREF1058_RS04765 at 321.014 kb on + strand, within HMPREF1058_RS04765 at 321.033 kb on - strand, within HMPREF1058_RS04765 at 321.056 kb on - strand, within HMPREF1058_RS04765 at 321.074 kb on + strand, within HMPREF1058_RS04765 at 321.075 kb on - strand, within HMPREF1058_RS04765 at 321.085 kb on - strand, within HMPREF1058_RS04765 at 321.099 kb on + strand, within HMPREF1058_RS04765 at 321.100 kb on - strand, within HMPREF1058_RS04765 at 321.185 kb on + strand, within HMPREF1058_RS04765 at 321.192 kb on - strand, within HMPREF1058_RS04765 at 321.290 kb on - strand at 321.319 kb on + strand at 321.406 kb on + strand at 321.509 kb on + strand, within HMPREF1058_RS21655 at 321.510 kb on - strand, within HMPREF1058_RS21655 at 321.510 kb on - strand, within HMPREF1058_RS21655 at 321.678 kb on + strand, within HMPREF1058_RS21655 at 321.679 kb on - strand, within HMPREF1058_RS21655 at 321.679 kb on - strand, within HMPREF1058_RS21655 at 321.680 kb on + strand, within HMPREF1058_RS21655 at 321.680 kb on + strand, within HMPREF1058_RS21655 at 321.681 kb on - strand, within HMPREF1058_RS21655 at 321.681 kb on - strand, within HMPREF1058_RS21655 at 321.681 kb on - strand, within HMPREF1058_RS21655 at 321.681 kb on - strand, within HMPREF1058_RS21655 at 321.681 kb on - strand, within HMPREF1058_RS21655 at 321.682 kb on + strand, within HMPREF1058_RS21655 at 321.682 kb on + strand, within HMPREF1058_RS21655 at 321.711 kb on - strand, within HMPREF1058_RS21655 at 321.711 kb on - strand, within HMPREF1058_RS21655 at 321.732 kb on - strand, within HMPREF1058_RS21655 at 321.790 kb on + strand, within HMPREF1058_RS21655 at 321.808 kb on + strand, within HMPREF1058_RS21655 at 321.808 kb on + strand, within HMPREF1058_RS21655 at 321.812 kb on + strand, within HMPREF1058_RS21655 at 321.812 kb on + strand, within HMPREF1058_RS21655 at 321.812 kb on + strand, within HMPREF1058_RS21655 at 321.813 kb on - strand, within HMPREF1058_RS21655 at 321.813 kb on - strand, within HMPREF1058_RS21655 at 321.845 kb on - strand at 321.891 kb on - strand at 321.893 kb on + strand at 321.944 kb on + strand at 321.981 kb on - strand at 322.020 kb on - strand at 322.153 kb on - strand at 322.180 kb on - strand at 322.183 kb on - strand at 322.183 kb on - strand at 322.221 kb on + strand at 322.221 kb on + strand at 322.221 kb on + strand at 322.222 kb on - strand at 322.222 kb on - strand at 322.222 kb on - strand at 322.223 kb on + strand at 322.223 kb on + strand at 322.223 kb on + strand at 322.224 kb on - strand at 322.224 kb on - strand at 322.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 319,945 + HMPREF1058_RS04775 0.37 +0.2 319,950 - HMPREF1058_RS04775 0.38 +0.0 319,950 - HMPREF1058_RS04775 0.38 -0.1 320,040 + HMPREF1058_RS04775 0.58 -1.0 320,050 + HMPREF1058_RS04775 0.60 -1.1 320,069 + HMPREF1058_RS04775 0.64 -0.3 320,070 - HMPREF1058_RS04775 0.64 -0.0 320,072 - HMPREF1058_RS04775 0.65 -0.6 320,090 + HMPREF1058_RS04775 0.69 -0.5 320,090 + HMPREF1058_RS04775 0.69 +1.8 320,120 - HMPREF1058_RS04775 0.75 +0.2 320,146 + HMPREF1058_RS04775 0.81 -0.9 320,147 - HMPREF1058_RS04775 0.81 -0.0 320,301 - -1.1 320,307 + +1.4 320,326 - -0.1 320,326 - -1.6 320,448 + HMPREF1058_RS04770 0.11 -0.5 320,510 - HMPREF1058_RS04770 0.25 +0.9 320,580 - HMPREF1058_RS04770 0.41 -1.1 320,592 + HMPREF1058_RS04770 0.44 -2.6 320,615 - HMPREF1058_RS04770 0.49 -0.4 320,629 - HMPREF1058_RS04770 0.52 -1.3 320,649 + HMPREF1058_RS04770 0.57 -2.7 320,650 - HMPREF1058_RS04770 0.57 -0.1 320,671 + HMPREF1058_RS04770 0.62 +0.1 320,672 - HMPREF1058_RS04770 0.62 -0.1 320,682 + HMPREF1058_RS04770 0.64 -0.4 320,682 + HMPREF1058_RS04770 0.64 +0.2 320,689 - HMPREF1058_RS04770 0.66 -0.8 320,713 + HMPREF1058_RS04770 0.71 -0.3 320,841 - +0.4 320,865 + -0.7 320,876 - +0.5 320,877 + -1.5 320,878 - -0.9 320,878 - +2.2 320,951 + HMPREF1058_RS04765 0.14 -1.3 321,001 - HMPREF1058_RS04765 0.26 -1.9 321,007 + HMPREF1058_RS04765 0.27 -0.5 321,010 - HMPREF1058_RS04765 0.28 -1.0 321,010 - HMPREF1058_RS04765 0.28 +1.5 321,014 + HMPREF1058_RS04765 0.29 -0.5 321,033 - HMPREF1058_RS04765 0.33 -2.1 321,056 - HMPREF1058_RS04765 0.38 -0.3 321,074 + HMPREF1058_RS04765 0.43 +0.9 321,075 - HMPREF1058_RS04765 0.43 +1.3 321,085 - HMPREF1058_RS04765 0.45 -0.4 321,099 + HMPREF1058_RS04765 0.48 -0.8 321,100 - HMPREF1058_RS04765 0.49 -0.5 321,185 + HMPREF1058_RS04765 0.68 -0.1 321,192 - HMPREF1058_RS04765 0.70 -0.8 321,290 - -1.8 321,319 + +0.0 321,406 + +0.6 321,509 + HMPREF1058_RS21655 0.21 -0.6 321,510 - HMPREF1058_RS21655 0.21 +0.3 321,510 - HMPREF1058_RS21655 0.21 +2.2 321,678 + HMPREF1058_RS21655 0.58 +0.2 321,679 - HMPREF1058_RS21655 0.58 +0.8 321,679 - HMPREF1058_RS21655 0.58 +2.8 321,680 + HMPREF1058_RS21655 0.58 -0.0 321,680 + HMPREF1058_RS21655 0.58 -1.1 321,681 - HMPREF1058_RS21655 0.58 -0.6 321,681 - HMPREF1058_RS21655 0.58 -0.2 321,681 - HMPREF1058_RS21655 0.58 +3.8 321,681 - HMPREF1058_RS21655 0.58 -0.2 321,681 - HMPREF1058_RS21655 0.58 -0.1 321,682 + HMPREF1058_RS21655 0.59 -1.1 321,682 + HMPREF1058_RS21655 0.59 +1.4 321,711 - HMPREF1058_RS21655 0.65 -0.3 321,711 - HMPREF1058_RS21655 0.65 -0.7 321,732 - HMPREF1058_RS21655 0.69 +0.3 321,790 + HMPREF1058_RS21655 0.82 -0.4 321,808 + HMPREF1058_RS21655 0.86 -0.1 321,808 + HMPREF1058_RS21655 0.86 -1.2 321,812 + HMPREF1058_RS21655 0.87 +0.3 321,812 + HMPREF1058_RS21655 0.87 +1.6 321,812 + HMPREF1058_RS21655 0.87 +1.0 321,813 - HMPREF1058_RS21655 0.87 +1.1 321,813 - HMPREF1058_RS21655 0.87 -0.9 321,845 - -0.2 321,891 - +0.7 321,893 + +1.6 321,944 + +0.7 321,981 - +0.5 322,020 - +0.2 322,153 - +1.9 322,180 - -0.9 322,183 - -0.4 322,183 - -0.1 322,221 + +0.6 322,221 + +1.2 322,221 + +0.2 322,222 - +1.0 322,222 - -0.3 322,222 - -0.8 322,223 + +2.0 322,223 + -0.9 322,223 + +1.7 322,224 - -1.3 322,224 - -0.2 322,285 - +0.2
Or see this region's nucleotide sequence