Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04745 and HMPREF1058_RS21660 are separated by 411 nucleotides HMPREF1058_RS21660 and HMPREF1058_RS04740 are separated by 196 nucleotides HMPREF1058_RS04740 and HMPREF1058_RS04735 are separated by 66 nucleotides HMPREF1058_RS04735 and HMPREF1058_RS04730 overlap by 8 nucleotides
HMPREF1058_RS04745: HMPREF1058_RS04745 - helix-turn-helix domain-containing protein, at 323,698 to 324,462
_RS04745
HMPREF1058_RS21660: HMPREF1058_RS21660 - hypothetical protein, at 324,874 to 325,137
_RS21660
HMPREF1058_RS04740: HMPREF1058_RS04740 - DUF5606 domain-containing protein, at 325,334 to 325,774
_RS04740
HMPREF1058_RS04735: HMPREF1058_RS04735 - dephospho-CoA kinase, at 325,841 to 326,437
_RS04735
HMPREF1058_RS04730: HMPREF1058_RS04730 - YbbR-like domain-containing protein, at 326,430 to 327,443
_RS04730
Position (kb) 325
326 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 324.686 kb on - strand at 324.728 kb on + strand at 324.943 kb on + strand, within HMPREF1058_RS21660 at 324.943 kb on + strand, within HMPREF1058_RS21660 at 324.944 kb on - strand, within HMPREF1058_RS21660 at 324.972 kb on - strand, within HMPREF1058_RS21660 at 325.171 kb on - strand at 325.172 kb on + strand at 325.173 kb on - strand at 325.173 kb on - strand at 325.189 kb on + strand at 325.237 kb on + strand at 325.238 kb on - strand at 325.243 kb on + strand at 325.244 kb on - strand at 325.299 kb on + strand at 325.326 kb on + strand at 325.399 kb on + strand, within HMPREF1058_RS04740 at 325.399 kb on + strand, within HMPREF1058_RS04740 at 325.418 kb on - strand, within HMPREF1058_RS04740 at 325.423 kb on - strand at 325.473 kb on + strand, within HMPREF1058_RS04740 at 325.473 kb on + strand, within HMPREF1058_RS04740 at 325.498 kb on - strand, within HMPREF1058_RS04740 at 325.498 kb on - strand, within HMPREF1058_RS04740 at 325.529 kb on - strand, within HMPREF1058_RS04740 at 325.530 kb on + strand, within HMPREF1058_RS04740 at 325.614 kb on + strand, within HMPREF1058_RS04740 at 325.614 kb on + strand, within HMPREF1058_RS04740 at 325.615 kb on - strand, within HMPREF1058_RS04740 at 325.619 kb on - strand, within HMPREF1058_RS04740 at 325.619 kb on - strand, within HMPREF1058_RS04740 at 325.732 kb on - strand at 325.732 kb on - strand at 325.733 kb on + strand at 325.774 kb on + strand at 325.777 kb on + strand at 325.787 kb on + strand at 325.788 kb on - strand at 325.875 kb on - strand at 325.875 kb on - strand at 326.727 kb on - strand, within HMPREF1058_RS04730
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 324,686 - -0.4 324,728 + +0.7 324,943 + HMPREF1058_RS21660 0.26 -0.0 324,943 + HMPREF1058_RS21660 0.26 +0.4 324,944 - HMPREF1058_RS21660 0.27 +1.5 324,972 - HMPREF1058_RS21660 0.37 +0.4 325,171 - -0.0 325,172 + +0.1 325,173 - +0.4 325,173 - -0.2 325,189 + -1.2 325,237 + -0.2 325,238 - -1.4 325,243 + -1.0 325,244 - -1.0 325,299 + +0.4 325,326 + -0.9 325,399 + HMPREF1058_RS04740 0.15 -0.6 325,399 + HMPREF1058_RS04740 0.15 -0.6 325,418 - HMPREF1058_RS04740 0.19 -0.4 325,423 - -1.2 325,473 + HMPREF1058_RS04740 0.32 -1.3 325,473 + HMPREF1058_RS04740 0.32 -1.9 325,498 - HMPREF1058_RS04740 0.37 -0.2 325,498 - HMPREF1058_RS04740 0.37 +0.8 325,529 - HMPREF1058_RS04740 0.44 -2.2 325,530 + HMPREF1058_RS04740 0.44 -1.1 325,614 + HMPREF1058_RS04740 0.63 -0.5 325,614 + HMPREF1058_RS04740 0.63 -1.6 325,615 - HMPREF1058_RS04740 0.64 -2.8 325,619 - HMPREF1058_RS04740 0.65 +0.3 325,619 - HMPREF1058_RS04740 0.65 -0.3 325,732 - +0.1 325,732 - +0.4 325,733 + +0.6 325,774 + -0.2 325,777 + -0.7 325,787 + -0.2 325,788 - +0.9 325,875 - +0.2 325,875 - -2.1 326,727 - HMPREF1058_RS04730 0.29 -0.1
Or see this region's nucleotide sequence