Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04300 and HMPREF1058_RS04295 are separated by 107 nucleotides HMPREF1058_RS04295 and HMPREF1058_RS04290 are separated by 108 nucleotides
HMPREF1058_RS04300: HMPREF1058_RS04300 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 70,933 to 72,003
_RS04300
HMPREF1058_RS04295: HMPREF1058_RS04295 - 3-phosphoglycerate dehydrogenase, at 72,111 to 73,031
_RS04295
HMPREF1058_RS04290: HMPREF1058_RS04290 - DUF1015 domain-containing protein, at 73,140 to 74,387
_RS04290
Position (kb) 72
73
74 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 71.138 kb on + strand, within HMPREF1058_RS04300 at 71.172 kb on + strand, within HMPREF1058_RS04300 at 71.173 kb on - strand, within HMPREF1058_RS04300 at 71.177 kb on + strand, within HMPREF1058_RS04300 at 71.177 kb on + strand, within HMPREF1058_RS04300 at 71.178 kb on - strand, within HMPREF1058_RS04300 at 71.302 kb on + strand, within HMPREF1058_RS04300 at 71.302 kb on + strand, within HMPREF1058_RS04300 at 71.303 kb on - strand, within HMPREF1058_RS04300 at 71.305 kb on - strand, within HMPREF1058_RS04300 at 71.430 kb on + strand, within HMPREF1058_RS04300 at 71.475 kb on + strand, within HMPREF1058_RS04300 at 71.481 kb on + strand at 71.676 kb on - strand, within HMPREF1058_RS04300 at 71.737 kb on + strand, within HMPREF1058_RS04300 at 71.834 kb on - strand, within HMPREF1058_RS04300 at 71.880 kb on + strand, within HMPREF1058_RS04300 at 71.940 kb on + strand at 72.004 kb on + strand at 72.005 kb on - strand at 72.008 kb on + strand at 72.158 kb on - strand at 72.158 kb on - strand at 72.217 kb on - strand, within HMPREF1058_RS04295 at 72.235 kb on + strand, within HMPREF1058_RS04295 at 72.236 kb on - strand, within HMPREF1058_RS04295 at 72.236 kb on - strand, within HMPREF1058_RS04295 at 72.281 kb on + strand, within HMPREF1058_RS04295 at 72.331 kb on + strand, within HMPREF1058_RS04295 at 72.332 kb on - strand, within HMPREF1058_RS04295 at 72.581 kb on + strand, within HMPREF1058_RS04295 at 72.664 kb on - strand at 72.678 kb on - strand, within HMPREF1058_RS04295 at 72.729 kb on + strand, within HMPREF1058_RS04295 at 72.763 kb on + strand, within HMPREF1058_RS04295 at 72.838 kb on + strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295 at 73.025 kb on + strand at 73.026 kb on - strand at 73.034 kb on - strand at 73.077 kb on - strand at 73.078 kb on + strand at 73.078 kb on + strand at 73.078 kb on + strand at 73.079 kb on - strand at 73.084 kb on - strand at 73.147 kb on + strand at 73.151 kb on - strand at 73.272 kb on + strand, within HMPREF1058_RS04290 at 73.272 kb on + strand, within HMPREF1058_RS04290 at 73.328 kb on + strand, within HMPREF1058_RS04290 at 73.329 kb on - strand, within HMPREF1058_RS04290 at 73.333 kb on + strand, within HMPREF1058_RS04290 at 73.333 kb on + strand, within HMPREF1058_RS04290 at 73.336 kb on - strand, within HMPREF1058_RS04290 at 73.408 kb on - strand, within HMPREF1058_RS04290 at 73.411 kb on - strand, within HMPREF1058_RS04290 at 73.415 kb on - strand, within HMPREF1058_RS04290 at 73.632 kb on - strand, within HMPREF1058_RS04290 at 73.715 kb on + strand, within HMPREF1058_RS04290 at 73.717 kb on + strand, within HMPREF1058_RS04290 at 73.852 kb on - strand, within HMPREF1058_RS04290 at 73.857 kb on + strand, within HMPREF1058_RS04290 at 73.857 kb on + strand, within HMPREF1058_RS04290 at 73.906 kb on - strand, within HMPREF1058_RS04290 at 74.004 kb on + strand, within HMPREF1058_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 71,138 + HMPREF1058_RS04300 0.19 -5.2 71,172 + HMPREF1058_RS04300 0.22 -2.0 71,173 - HMPREF1058_RS04300 0.22 -0.8 71,177 + HMPREF1058_RS04300 0.23 -0.4 71,177 + HMPREF1058_RS04300 0.23 -1.2 71,178 - HMPREF1058_RS04300 0.23 -0.9 71,302 + HMPREF1058_RS04300 0.34 -3.3 71,302 + HMPREF1058_RS04300 0.34 -2.9 71,303 - HMPREF1058_RS04300 0.35 +1.2 71,305 - HMPREF1058_RS04300 0.35 -2.4 71,430 + HMPREF1058_RS04300 0.46 -1.4 71,475 + HMPREF1058_RS04300 0.51 -0.6 71,481 + -0.4 71,676 - HMPREF1058_RS04300 0.69 +0.6 71,737 + HMPREF1058_RS04300 0.75 -4.5 71,834 - HMPREF1058_RS04300 0.84 -0.1 71,880 + HMPREF1058_RS04300 0.88 -1.9 71,940 + -0.4 72,004 + -0.9 72,005 - -1.8 72,008 + +0.2 72,158 - -0.4 72,158 - -0.8 72,217 - HMPREF1058_RS04295 0.12 +0.2 72,235 + HMPREF1058_RS04295 0.13 -4.0 72,236 - HMPREF1058_RS04295 0.14 -4.7 72,236 - HMPREF1058_RS04295 0.14 +2.2 72,281 + HMPREF1058_RS04295 0.18 -1.4 72,331 + HMPREF1058_RS04295 0.24 -2.2 72,332 - HMPREF1058_RS04295 0.24 -0.4 72,581 + HMPREF1058_RS04295 0.51 -3.2 72,664 - -0.1 72,678 - HMPREF1058_RS04295 0.62 -3.1 72,729 + HMPREF1058_RS04295 0.67 -2.8 72,763 + HMPREF1058_RS04295 0.71 -2.7 72,838 + HMPREF1058_RS04295 0.79 +2.2 72,844 - HMPREF1058_RS04295 0.80 -0.9 72,844 - HMPREF1058_RS04295 0.80 +0.2 73,025 + +0.1 73,026 - +1.4 73,034 - -0.1 73,077 - -0.5 73,078 + +0.2 73,078 + -0.8 73,078 + +0.3 73,079 - +0.3 73,084 - +0.6 73,147 + -0.4 73,151 - -0.1 73,272 + HMPREF1058_RS04290 0.11 -1.9 73,272 + HMPREF1058_RS04290 0.11 +0.1 73,328 + HMPREF1058_RS04290 0.15 -0.2 73,329 - HMPREF1058_RS04290 0.15 -0.6 73,333 + HMPREF1058_RS04290 0.15 +0.3 73,333 + HMPREF1058_RS04290 0.15 +0.9 73,336 - HMPREF1058_RS04290 0.16 -0.6 73,408 - HMPREF1058_RS04290 0.21 -0.4 73,411 - HMPREF1058_RS04290 0.22 +0.2 73,415 - HMPREF1058_RS04290 0.22 +1.6 73,632 - HMPREF1058_RS04290 0.39 +0.1 73,715 + HMPREF1058_RS04290 0.46 +0.7 73,717 + HMPREF1058_RS04290 0.46 +1.0 73,852 - HMPREF1058_RS04290 0.57 -1.1 73,857 + HMPREF1058_RS04290 0.57 -0.7 73,857 + HMPREF1058_RS04290 0.57 -0.6 73,906 - HMPREF1058_RS04290 0.61 +0.6 74,004 + HMPREF1058_RS04290 0.69 -0.4
Or see this region's nucleotide sequence