Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03535

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS03540 and HMPREF1058_RS03535 are separated by 80 nucleotidesHMPREF1058_RS03535 and HMPREF1058_RS03530 overlap by 1 nucleotides HMPREF1058_RS03540: HMPREF1058_RS03540 - sensor histidine kinase, at 252,470 to 253,771 _RS03540 HMPREF1058_RS03535: HMPREF1058_RS03535 - UvrD-helicase domain-containing protein, at 253,852 to 257,028 _RS03535 HMPREF1058_RS03530: HMPREF1058_RS03530 - PD-(D/E)XK nuclease family protein, at 257,028 to 259,907 _RS03530 Position (kb) 253 254 255 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 253.507 kb on + strand, within HMPREF1058_RS03540at 253.626 kb on + strand, within HMPREF1058_RS03540at 253.783 kb on + strandat 253.968 kb on + strandat 254.627 kb on + strand, within HMPREF1058_RS03535at 254.685 kb on - strand, within HMPREF1058_RS03535at 255.125 kb on + strand, within HMPREF1058_RS03535at 256.694 kb on + strand, within HMPREF1058_RS03535at 256.771 kb on + strandat 256.993 kb on + strandat 257.184 kb on + strandat 257.885 kb on - strand, within HMPREF1058_RS03530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
remove
253,507 + HMPREF1058_RS03540 0.80 -0.3
253,626 + HMPREF1058_RS03540 0.89 +1.0
253,783 + -0.8
253,968 + -1.1
254,627 + HMPREF1058_RS03535 0.24 +1.2
254,685 - HMPREF1058_RS03535 0.26 +0.2
255,125 + HMPREF1058_RS03535 0.40 +0.6
256,694 + HMPREF1058_RS03535 0.89 +2.2
256,771 + -2.2
256,993 + -1.8
257,184 + -0.1
257,885 - HMPREF1058_RS03530 0.30 -0.1

Or see this region's nucleotide sequence