Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03480 and HMPREF1058_RS03475 are separated by 179 nucleotides HMPREF1058_RS03475 and HMPREF1058_RS03470 are separated by 16 nucleotides
HMPREF1058_RS03480: HMPREF1058_RS03480 - ATP-binding protein, at 271,488 to 272,708
_RS03480
HMPREF1058_RS03475: HMPREF1058_RS03475 - radical SAM protein, at 272,888 to 273,961
_RS03475
HMPREF1058_RS03470: HMPREF1058_RS03470 - glycosyltransferase, at 273,978 to 275,156
_RS03470
Position (kb) 272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 271.939 kb on + strand, within HMPREF1058_RS03480 at 271.968 kb on - strand, within HMPREF1058_RS03480 at 272.172 kb on + strand, within HMPREF1058_RS03480 at 272.172 kb on + strand, within HMPREF1058_RS03480 at 272.173 kb on - strand, within HMPREF1058_RS03480 at 272.268 kb on + strand, within HMPREF1058_RS03480 at 272.439 kb on + strand, within HMPREF1058_RS03480 at 272.489 kb on - strand, within HMPREF1058_RS03480 at 272.603 kb on + strand at 272.603 kb on + strand at 272.603 kb on + strand at 272.658 kb on - strand at 272.785 kb on + strand at 272.785 kb on + strand at 272.790 kb on + strand at 272.790 kb on + strand at 272.881 kb on - strand at 272.904 kb on - strand at 273.016 kb on + strand, within HMPREF1058_RS03475 at 273.415 kb on - strand, within HMPREF1058_RS03475 at 273.425 kb on - strand, within HMPREF1058_RS03475 at 273.500 kb on - strand, within HMPREF1058_RS03475 at 273.506 kb on - strand, within HMPREF1058_RS03475 at 273.906 kb on + strand at 273.919 kb on + strand at 273.920 kb on - strand at 274.009 kb on + strand at 274.010 kb on - strand at 274.028 kb on - strand at 274.059 kb on - strand at 274.463 kb on - strand, within HMPREF1058_RS03470 at 274.465 kb on + strand, within HMPREF1058_RS03470 at 274.465 kb on + strand, within HMPREF1058_RS03470 at 274.669 kb on - strand, within HMPREF1058_RS03470 at 274.691 kb on + strand, within HMPREF1058_RS03470 at 274.691 kb on + strand, within HMPREF1058_RS03470 at 274.734 kb on + strand, within HMPREF1058_RS03470 at 274.810 kb on - strand, within HMPREF1058_RS03470 at 274.875 kb on + strand, within HMPREF1058_RS03470 at 274.876 kb on - strand, within HMPREF1058_RS03470 at 274.876 kb on - strand, within HMPREF1058_RS03470 at 274.924 kb on - strand, within HMPREF1058_RS03470
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 271,939 + HMPREF1058_RS03480 0.37 -0.4 271,968 - HMPREF1058_RS03480 0.39 +0.3 272,172 + HMPREF1058_RS03480 0.56 +0.4 272,172 + HMPREF1058_RS03480 0.56 -0.4 272,173 - HMPREF1058_RS03480 0.56 +0.2 272,268 + HMPREF1058_RS03480 0.64 -2.8 272,439 + HMPREF1058_RS03480 0.78 +1.2 272,489 - HMPREF1058_RS03480 0.82 -0.7 272,603 + +0.9 272,603 + +0.5 272,603 + +0.6 272,658 - -1.3 272,785 + +0.2 272,785 + +0.2 272,790 + -0.6 272,790 + +0.6 272,881 - -0.9 272,904 - -0.1 273,016 + HMPREF1058_RS03475 0.12 -0.9 273,415 - HMPREF1058_RS03475 0.49 -0.1 273,425 - HMPREF1058_RS03475 0.50 -0.7 273,500 - HMPREF1058_RS03475 0.57 -0.8 273,506 - HMPREF1058_RS03475 0.58 -0.3 273,906 + +0.3 273,919 + +0.3 273,920 - +0.3 274,009 + +0.7 274,010 - +0.8 274,028 - -1.4 274,059 - +0.7 274,463 - HMPREF1058_RS03470 0.41 -0.9 274,465 + HMPREF1058_RS03470 0.41 +0.2 274,465 + HMPREF1058_RS03470 0.41 -2.5 274,669 - HMPREF1058_RS03470 0.59 +0.6 274,691 + HMPREF1058_RS03470 0.60 -0.7 274,691 + HMPREF1058_RS03470 0.60 -1.0 274,734 + HMPREF1058_RS03470 0.64 -0.1 274,810 - HMPREF1058_RS03470 0.71 +0.6 274,875 + HMPREF1058_RS03470 0.76 -1.1 274,876 - HMPREF1058_RS03470 0.76 +0.3 274,876 - HMPREF1058_RS03470 0.76 +0.1 274,924 - HMPREF1058_RS03470 0.80 +1.9
Or see this region's nucleotide sequence