Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02760 and HMPREF1058_RS02755 are separated by 709 nucleotides HMPREF1058_RS02755 and HMPREF1058_RS02750 overlap by 4 nucleotides
HMPREF1058_RS02760: HMPREF1058_RS02760 - peptidylprolyl isomerase, at 100,304 to 101,149
_RS02760
HMPREF1058_RS02755: HMPREF1058_RS02755 - translocation/assembly module TamB domain-containing protein, at 101,859 to 106,508
_RS02755
HMPREF1058_RS02750: HMPREF1058_RS02750 - BamA/TamA family outer membrane protein, at 106,505 to 108,862
_RS02750
Position (kb) 101
102
103
104
105
106
107 Strain fitness (log2 ratio) -2
-1
0
1
2 at 100.936 kb on - strand, within HMPREF1058_RS02760 at 100.937 kb on + strand, within HMPREF1058_RS02760 at 100.938 kb on - strand, within HMPREF1058_RS02760 at 100.991 kb on - strand, within HMPREF1058_RS02760 at 100.992 kb on + strand, within HMPREF1058_RS02760 at 101.124 kb on - strand at 101.127 kb on - strand at 101.197 kb on + strand at 101.251 kb on + strand at 101.320 kb on - strand at 101.425 kb on - strand at 101.475 kb on + strand at 101.556 kb on + strand at 101.561 kb on + strand at 101.711 kb on - strand at 101.711 kb on - strand at 101.926 kb on + strand at 101.932 kb on + strand at 101.983 kb on + strand at 102.068 kb on - strand at 102.092 kb on + strand at 102.201 kb on - strand at 102.523 kb on - strand, within HMPREF1058_RS02755 at 102.680 kb on + strand, within HMPREF1058_RS02755 at 102.680 kb on + strand, within HMPREF1058_RS02755 at 102.692 kb on - strand, within HMPREF1058_RS02755 at 102.897 kb on - strand, within HMPREF1058_RS02755 at 103.287 kb on - strand, within HMPREF1058_RS02755 at 103.287 kb on - strand, within HMPREF1058_RS02755 at 103.389 kb on + strand at 104.036 kb on + strand, within HMPREF1058_RS02755 at 104.086 kb on + strand, within HMPREF1058_RS02755 at 104.143 kb on - strand, within HMPREF1058_RS02755 at 104.203 kb on - strand, within HMPREF1058_RS02755 at 104.203 kb on - strand, within HMPREF1058_RS02755 at 104.257 kb on + strand, within HMPREF1058_RS02755 at 104.257 kb on + strand, within HMPREF1058_RS02755 at 104.414 kb on - strand, within HMPREF1058_RS02755 at 104.415 kb on + strand, within HMPREF1058_RS02755 at 104.415 kb on + strand, within HMPREF1058_RS02755 at 104.417 kb on + strand, within HMPREF1058_RS02755 at 104.418 kb on - strand, within HMPREF1058_RS02755 at 104.489 kb on - strand, within HMPREF1058_RS02755 at 104.522 kb on + strand, within HMPREF1058_RS02755 at 104.599 kb on - strand, within HMPREF1058_RS02755 at 104.731 kb on - strand, within HMPREF1058_RS02755 at 104.732 kb on + strand, within HMPREF1058_RS02755 at 104.749 kb on - strand, within HMPREF1058_RS02755 at 104.871 kb on + strand, within HMPREF1058_RS02755 at 104.872 kb on - strand, within HMPREF1058_RS02755 at 104.872 kb on - strand, within HMPREF1058_RS02755 at 104.960 kb on - strand, within HMPREF1058_RS02755 at 105.421 kb on + strand, within HMPREF1058_RS02755 at 105.444 kb on + strand, within HMPREF1058_RS02755 at 105.590 kb on + strand, within HMPREF1058_RS02755 at 105.643 kb on - strand, within HMPREF1058_RS02755 at 106.060 kb on - strand at 106.424 kb on - strand at 106.493 kb on + strand at 106.493 kb on + strand at 106.539 kb on + strand at 106.539 kb on + strand at 106.551 kb on + strand at 106.552 kb on - strand at 106.591 kb on + strand at 106.620 kb on + strand at 106.622 kb on + strand at 106.721 kb on - strand at 106.860 kb on - strand at 106.860 kb on - strand, within HMPREF1058_RS02750 at 107.082 kb on - strand, within HMPREF1058_RS02750 at 107.297 kb on + strand, within HMPREF1058_RS02750 at 107.299 kb on + strand, within HMPREF1058_RS02750 at 107.309 kb on - strand, within HMPREF1058_RS02750 at 107.309 kb on - strand, within HMPREF1058_RS02750 at 107.309 kb on - strand, within HMPREF1058_RS02750 at 107.319 kb on - strand, within HMPREF1058_RS02750 at 107.386 kb on + strand, within HMPREF1058_RS02750
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 100,936 - HMPREF1058_RS02760 0.75 -0.9 100,937 + HMPREF1058_RS02760 0.75 -1.3 100,938 - HMPREF1058_RS02760 0.75 +0.8 100,991 - HMPREF1058_RS02760 0.81 -0.2 100,992 + HMPREF1058_RS02760 0.81 -0.4 101,124 - -0.0 101,127 - +0.2 101,197 + -1.7 101,251 + -0.4 101,320 - -0.8 101,425 - -1.0 101,475 + +0.2 101,556 + +0.0 101,561 + +0.4 101,711 - -1.4 101,711 - -0.4 101,926 + -0.8 101,932 + +1.2 101,983 + -0.1 102,068 - +1.2 102,092 + -0.1 102,201 - +1.2 102,523 - HMPREF1058_RS02755 0.14 -1.5 102,680 + HMPREF1058_RS02755 0.18 +1.2 102,680 + HMPREF1058_RS02755 0.18 -0.1 102,692 - HMPREF1058_RS02755 0.18 -0.6 102,897 - HMPREF1058_RS02755 0.22 +2.2 103,287 - HMPREF1058_RS02755 0.31 -0.6 103,287 - HMPREF1058_RS02755 0.31 -0.3 103,389 + +2.2 104,036 + HMPREF1058_RS02755 0.47 +2.2 104,086 + HMPREF1058_RS02755 0.48 +2.2 104,143 - HMPREF1058_RS02755 0.49 -0.3 104,203 - HMPREF1058_RS02755 0.50 +2.2 104,203 - HMPREF1058_RS02755 0.50 -0.9 104,257 + HMPREF1058_RS02755 0.52 +0.2 104,257 + HMPREF1058_RS02755 0.52 +0.2 104,414 - HMPREF1058_RS02755 0.55 +2.2 104,415 + HMPREF1058_RS02755 0.55 -0.8 104,415 + HMPREF1058_RS02755 0.55 +0.7 104,417 + HMPREF1058_RS02755 0.55 +0.2 104,418 - HMPREF1058_RS02755 0.55 +0.2 104,489 - HMPREF1058_RS02755 0.57 +2.2 104,522 + HMPREF1058_RS02755 0.57 -0.3 104,599 - HMPREF1058_RS02755 0.59 -0.6 104,731 - HMPREF1058_RS02755 0.62 -0.9 104,732 + HMPREF1058_RS02755 0.62 -1.5 104,749 - HMPREF1058_RS02755 0.62 +0.7 104,871 + HMPREF1058_RS02755 0.65 -0.1 104,872 - HMPREF1058_RS02755 0.65 +1.2 104,872 - HMPREF1058_RS02755 0.65 -0.3 104,960 - HMPREF1058_RS02755 0.67 -0.6 105,421 + HMPREF1058_RS02755 0.77 -0.3 105,444 + HMPREF1058_RS02755 0.77 -0.1 105,590 + HMPREF1058_RS02755 0.80 +1.2 105,643 - HMPREF1058_RS02755 0.81 -1.9 106,060 - +0.9 106,424 - +0.7 106,493 + -0.1 106,493 + -0.2 106,539 + -2.0 106,539 + +0.3 106,551 + +0.5 106,552 - -0.1 106,591 + +2.2 106,620 + +1.2 106,622 + +0.2 106,721 - +0.2 106,860 - +2.2 106,860 - HMPREF1058_RS02750 0.15 -0.6 107,082 - HMPREF1058_RS02750 0.24 +2.2 107,297 + HMPREF1058_RS02750 0.34 -0.1 107,299 + HMPREF1058_RS02750 0.34 -2.1 107,309 - HMPREF1058_RS02750 0.34 -0.8 107,309 - HMPREF1058_RS02750 0.34 -0.1 107,309 - HMPREF1058_RS02750 0.34 -0.3 107,319 - HMPREF1058_RS02750 0.35 -0.8 107,386 + HMPREF1058_RS02750 0.37 -0.3
Or see this region's nucleotide sequence