Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02415 and HMPREF1058_RS02410 are separated by 322 nucleotides HMPREF1058_RS02410 and HMPREF1058_RS02405 are separated by 9 nucleotides
HMPREF1058_RS02415: HMPREF1058_RS02415 - RagB/SusD family nutrient uptake outer membrane protein, at 192,799 to 194,289
_RS02415
HMPREF1058_RS02410: HMPREF1058_RS02410 - methylmalonyl-CoA mutase, at 194,612 to 196,762
_RS02410
HMPREF1058_RS02405: HMPREF1058_RS02405 - methylmalonyl-CoA mutase small subunit, at 196,772 to 198,682
_RS02405
Position (kb) 194
195
196
197 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 193.657 kb on + strand, within HMPREF1058_RS02415 at 193.657 kb on + strand, within HMPREF1058_RS02415 at 193.657 kb on + strand, within HMPREF1058_RS02415 at 193.657 kb on + strand, within HMPREF1058_RS02415 at 193.658 kb on - strand, within HMPREF1058_RS02415 at 193.658 kb on - strand, within HMPREF1058_RS02415 at 193.658 kb on - strand, within HMPREF1058_RS02415 at 193.702 kb on + strand, within HMPREF1058_RS02415 at 193.712 kb on - strand, within HMPREF1058_RS02415 at 193.712 kb on - strand, within HMPREF1058_RS02415 at 193.712 kb on - strand, within HMPREF1058_RS02415 at 193.713 kb on + strand, within HMPREF1058_RS02415 at 193.713 kb on + strand, within HMPREF1058_RS02415 at 193.713 kb on + strand, within HMPREF1058_RS02415 at 193.713 kb on + strand, within HMPREF1058_RS02415 at 193.713 kb on + strand, within HMPREF1058_RS02415 at 193.713 kb on + strand at 193.713 kb on + strand, within HMPREF1058_RS02415 at 193.714 kb on - strand, within HMPREF1058_RS02415 at 193.714 kb on - strand, within HMPREF1058_RS02415 at 193.714 kb on - strand, within HMPREF1058_RS02415 at 193.714 kb on - strand, within HMPREF1058_RS02415 at 193.764 kb on - strand, within HMPREF1058_RS02415 at 193.764 kb on - strand, within HMPREF1058_RS02415 at 193.803 kb on - strand, within HMPREF1058_RS02415 at 193.870 kb on + strand, within HMPREF1058_RS02415 at 193.881 kb on + strand, within HMPREF1058_RS02415 at 193.930 kb on - strand, within HMPREF1058_RS02415 at 194.010 kb on + strand, within HMPREF1058_RS02415 at 194.013 kb on + strand, within HMPREF1058_RS02415 at 194.013 kb on + strand, within HMPREF1058_RS02415 at 194.014 kb on - strand, within HMPREF1058_RS02415 at 194.085 kb on + strand, within HMPREF1058_RS02415 at 194.131 kb on + strand, within HMPREF1058_RS02415 at 194.151 kb on + strand at 194.151 kb on + strand at 194.151 kb on + strand at 194.151 kb on + strand at 194.157 kb on + strand at 194.184 kb on - strand at 194.240 kb on + strand at 194.240 kb on + strand at 194.290 kb on + strand at 194.290 kb on + strand at 194.424 kb on + strand at 194.427 kb on + strand at 194.428 kb on - strand at 194.437 kb on + strand at 194.438 kb on - strand at 194.471 kb on - strand at 194.543 kb on - strand at 194.573 kb on - strand at 194.595 kb on + strand at 194.596 kb on - strand at 194.690 kb on + strand at 194.706 kb on + strand at 194.792 kb on - strand at 194.841 kb on - strand, within HMPREF1058_RS02410 at 194.844 kb on - strand, within HMPREF1058_RS02410 at 194.998 kb on + strand, within HMPREF1058_RS02410 at 195.087 kb on + strand, within HMPREF1058_RS02410 at 195.100 kb on + strand, within HMPREF1058_RS02410 at 195.100 kb on + strand, within HMPREF1058_RS02410 at 195.118 kb on + strand, within HMPREF1058_RS02410 at 195.118 kb on + strand, within HMPREF1058_RS02410 at 195.119 kb on - strand, within HMPREF1058_RS02410 at 195.119 kb on - strand, within HMPREF1058_RS02410 at 195.120 kb on + strand, within HMPREF1058_RS02410 at 195.128 kb on + strand, within HMPREF1058_RS02410 at 195.166 kb on + strand, within HMPREF1058_RS02410 at 195.189 kb on - strand, within HMPREF1058_RS02410 at 195.224 kb on + strand, within HMPREF1058_RS02410 at 195.317 kb on + strand, within HMPREF1058_RS02410 at 195.326 kb on - strand, within HMPREF1058_RS02410 at 195.372 kb on + strand, within HMPREF1058_RS02410 at 195.386 kb on + strand, within HMPREF1058_RS02410 at 195.424 kb on + strand, within HMPREF1058_RS02410 at 195.511 kb on + strand, within HMPREF1058_RS02410 at 195.511 kb on + strand, within HMPREF1058_RS02410 at 195.511 kb on + strand, within HMPREF1058_RS02410 at 195.559 kb on - strand, within HMPREF1058_RS02410 at 195.559 kb on - strand, within HMPREF1058_RS02410 at 195.559 kb on - strand, within HMPREF1058_RS02410 at 195.561 kb on + strand, within HMPREF1058_RS02410 at 195.562 kb on - strand, within HMPREF1058_RS02410 at 195.598 kb on - strand, within HMPREF1058_RS02410 at 195.613 kb on + strand, within HMPREF1058_RS02410 at 195.628 kb on + strand, within HMPREF1058_RS02410 at 195.637 kb on + strand, within HMPREF1058_RS02410 at 195.724 kb on + strand, within HMPREF1058_RS02410 at 195.734 kb on - strand, within HMPREF1058_RS02410 at 195.746 kb on + strand, within HMPREF1058_RS02410 at 195.746 kb on + strand, within HMPREF1058_RS02410 at 195.865 kb on + strand, within HMPREF1058_RS02410 at 195.866 kb on - strand, within HMPREF1058_RS02410 at 195.866 kb on - strand, within HMPREF1058_RS02410 at 195.957 kb on - strand, within HMPREF1058_RS02410 at 195.957 kb on - strand, within HMPREF1058_RS02410 at 195.985 kb on - strand, within HMPREF1058_RS02410 at 196.006 kb on + strand, within HMPREF1058_RS02410 at 196.007 kb on - strand, within HMPREF1058_RS02410 at 196.007 kb on - strand, within HMPREF1058_RS02410 at 196.007 kb on - strand, within HMPREF1058_RS02410 at 196.009 kb on - strand, within HMPREF1058_RS02410 at 196.099 kb on + strand, within HMPREF1058_RS02410 at 196.099 kb on + strand, within HMPREF1058_RS02410 at 196.101 kb on + strand, within HMPREF1058_RS02410 at 196.110 kb on - strand, within HMPREF1058_RS02410 at 196.146 kb on + strand, within HMPREF1058_RS02410 at 196.150 kb on + strand, within HMPREF1058_RS02410 at 196.153 kb on - strand, within HMPREF1058_RS02410 at 196.184 kb on - strand, within HMPREF1058_RS02410 at 196.247 kb on - strand, within HMPREF1058_RS02410 at 196.248 kb on + strand, within HMPREF1058_RS02410 at 196.248 kb on + strand, within HMPREF1058_RS02410 at 196.249 kb on - strand, within HMPREF1058_RS02410 at 196.269 kb on - strand, within HMPREF1058_RS02410 at 196.373 kb on + strand, within HMPREF1058_RS02410 at 196.373 kb on + strand, within HMPREF1058_RS02410 at 196.374 kb on - strand, within HMPREF1058_RS02410 at 196.374 kb on - strand, within HMPREF1058_RS02410 at 196.374 kb on - strand, within HMPREF1058_RS02410 at 196.374 kb on - strand, within HMPREF1058_RS02410 at 196.383 kb on - strand, within HMPREF1058_RS02410 at 196.486 kb on + strand, within HMPREF1058_RS02410 at 196.545 kb on + strand, within HMPREF1058_RS02410 at 196.546 kb on - strand, within HMPREF1058_RS02410 at 196.573 kb on - strand at 196.582 kb on + strand at 196.583 kb on - strand at 196.589 kb on + strand at 196.632 kb on + strand at 196.632 kb on + strand at 196.706 kb on - strand at 196.731 kb on + strand at 196.731 kb on + strand at 196.732 kb on - strand at 196.732 kb on - strand at 196.732 kb on - strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.735 kb on + strand at 196.735 kb on + strand at 196.778 kb on - strand at 196.778 kb on - strand at 196.784 kb on + strand at 196.789 kb on + strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.797 kb on + strand at 196.874 kb on - strand at 196.941 kb on + strand at 196.942 kb on - strand at 196.972 kb on + strand, within HMPREF1058_RS02405 at 196.977 kb on - strand, within HMPREF1058_RS02405 at 197.000 kb on - strand, within HMPREF1058_RS02405 at 197.022 kb on - strand, within HMPREF1058_RS02405 at 197.022 kb on - strand, within HMPREF1058_RS02405 at 197.271 kb on - strand, within HMPREF1058_RS02405 at 197.305 kb on + strand, within HMPREF1058_RS02405 at 197.306 kb on - strand, within HMPREF1058_RS02405 at 197.311 kb on - strand, within HMPREF1058_RS02405 at 197.438 kb on + strand, within HMPREF1058_RS02405 at 197.500 kb on - strand, within HMPREF1058_RS02405 at 197.522 kb on + strand, within HMPREF1058_RS02405 at 197.523 kb on - strand, within HMPREF1058_RS02405 at 197.556 kb on - strand, within HMPREF1058_RS02405 at 197.556 kb on - strand, within HMPREF1058_RS02405 at 197.604 kb on + strand, within HMPREF1058_RS02405 at 197.605 kb on - strand, within HMPREF1058_RS02405 at 197.605 kb on - strand, within HMPREF1058_RS02405 at 197.625 kb on - strand, within HMPREF1058_RS02405 at 197.690 kb on + strand, within HMPREF1058_RS02405
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 193,657 + HMPREF1058_RS02415 0.58 +0.1 193,657 + HMPREF1058_RS02415 0.58 -1.1 193,657 + HMPREF1058_RS02415 0.58 +0.1 193,657 + HMPREF1058_RS02415 0.58 -0.5 193,658 - HMPREF1058_RS02415 0.58 -0.1 193,658 - HMPREF1058_RS02415 0.58 -0.2 193,658 - HMPREF1058_RS02415 0.58 -0.9 193,702 + HMPREF1058_RS02415 0.61 -0.6 193,712 - HMPREF1058_RS02415 0.61 -1.0 193,712 - HMPREF1058_RS02415 0.61 -0.6 193,712 - HMPREF1058_RS02415 0.61 -0.7 193,713 + HMPREF1058_RS02415 0.61 -0.6 193,713 + HMPREF1058_RS02415 0.61 +0.2 193,713 + HMPREF1058_RS02415 0.61 +0.3 193,713 + HMPREF1058_RS02415 0.61 +0.2 193,713 + HMPREF1058_RS02415 0.61 +0.5 193,713 + +2.8 193,713 + HMPREF1058_RS02415 0.61 -0.2 193,714 - HMPREF1058_RS02415 0.61 +0.2 193,714 - HMPREF1058_RS02415 0.61 +1.7 193,714 - HMPREF1058_RS02415 0.61 +0.2 193,714 - HMPREF1058_RS02415 0.61 -1.1 193,764 - HMPREF1058_RS02415 0.65 +1.2 193,764 - HMPREF1058_RS02415 0.65 +0.2 193,803 - HMPREF1058_RS02415 0.67 +1.0 193,870 + HMPREF1058_RS02415 0.72 -0.9 193,881 + HMPREF1058_RS02415 0.73 -0.8 193,930 - HMPREF1058_RS02415 0.76 +1.5 194,010 + HMPREF1058_RS02415 0.81 -0.0 194,013 + HMPREF1058_RS02415 0.81 +1.1 194,013 + HMPREF1058_RS02415 0.81 +2.2 194,014 - HMPREF1058_RS02415 0.81 -1.2 194,085 + HMPREF1058_RS02415 0.86 -2.2 194,131 + HMPREF1058_RS02415 0.89 -0.0 194,151 + +1.0 194,151 + -2.8 194,151 + -0.9 194,151 + -0.8 194,157 + -0.5 194,184 - -1.2 194,240 + -0.4 194,240 + +0.0 194,290 + +0.5 194,290 + -0.3 194,424 + +0.3 194,427 + -1.7 194,428 - +0.4 194,437 + +1.5 194,438 - -1.2 194,471 - +0.3 194,543 - -1.0 194,573 - +0.8 194,595 + -1.1 194,596 - -0.3 194,690 + -1.3 194,706 + -1.9 194,792 - -1.2 194,841 - HMPREF1058_RS02410 0.11 -0.5 194,844 - HMPREF1058_RS02410 0.11 -1.8 194,998 + HMPREF1058_RS02410 0.18 -1.1 195,087 + HMPREF1058_RS02410 0.22 -0.5 195,100 + HMPREF1058_RS02410 0.23 -1.8 195,100 + HMPREF1058_RS02410 0.23 -1.5 195,118 + HMPREF1058_RS02410 0.24 -1.5 195,118 + HMPREF1058_RS02410 0.24 -0.8 195,119 - HMPREF1058_RS02410 0.24 +0.0 195,119 - HMPREF1058_RS02410 0.24 -1.6 195,120 + HMPREF1058_RS02410 0.24 -0.3 195,128 + HMPREF1058_RS02410 0.24 -1.8 195,166 + HMPREF1058_RS02410 0.26 -1.5 195,189 - HMPREF1058_RS02410 0.27 -2.4 195,224 + HMPREF1058_RS02410 0.28 -1.9 195,317 + HMPREF1058_RS02410 0.33 -2.4 195,326 - HMPREF1058_RS02410 0.33 -1.2 195,372 + HMPREF1058_RS02410 0.35 -1.3 195,386 + HMPREF1058_RS02410 0.36 -0.6 195,424 + HMPREF1058_RS02410 0.38 -0.1 195,511 + HMPREF1058_RS02410 0.42 -2.2 195,511 + HMPREF1058_RS02410 0.42 -1.7 195,511 + HMPREF1058_RS02410 0.42 -1.8 195,559 - HMPREF1058_RS02410 0.44 -1.8 195,559 - HMPREF1058_RS02410 0.44 -2.5 195,559 - HMPREF1058_RS02410 0.44 -0.8 195,561 + HMPREF1058_RS02410 0.44 -1.0 195,562 - HMPREF1058_RS02410 0.44 +0.4 195,598 - HMPREF1058_RS02410 0.46 -0.0 195,613 + HMPREF1058_RS02410 0.47 -3.3 195,628 + HMPREF1058_RS02410 0.47 -2.3 195,637 + HMPREF1058_RS02410 0.48 -0.6 195,724 + HMPREF1058_RS02410 0.52 -1.0 195,734 - HMPREF1058_RS02410 0.52 -2.2 195,746 + HMPREF1058_RS02410 0.53 +0.7 195,746 + HMPREF1058_RS02410 0.53 -1.5 195,865 + HMPREF1058_RS02410 0.58 -1.7 195,866 - HMPREF1058_RS02410 0.58 -2.4 195,866 - HMPREF1058_RS02410 0.58 -1.7 195,957 - HMPREF1058_RS02410 0.63 -0.4 195,957 - HMPREF1058_RS02410 0.63 -2.0 195,985 - HMPREF1058_RS02410 0.64 -1.2 196,006 + HMPREF1058_RS02410 0.65 -0.6 196,007 - HMPREF1058_RS02410 0.65 +0.2 196,007 - HMPREF1058_RS02410 0.65 -1.6 196,007 - HMPREF1058_RS02410 0.65 -1.3 196,009 - HMPREF1058_RS02410 0.65 -0.1 196,099 + HMPREF1058_RS02410 0.69 -1.4 196,099 + HMPREF1058_RS02410 0.69 -0.2 196,101 + HMPREF1058_RS02410 0.69 -4.2 196,110 - HMPREF1058_RS02410 0.70 -0.7 196,146 + HMPREF1058_RS02410 0.71 -1.9 196,150 + HMPREF1058_RS02410 0.72 -2.3 196,153 - HMPREF1058_RS02410 0.72 -1.9 196,184 - HMPREF1058_RS02410 0.73 -1.1 196,247 - HMPREF1058_RS02410 0.76 -0.8 196,248 + HMPREF1058_RS02410 0.76 -1.1 196,248 + HMPREF1058_RS02410 0.76 -1.1 196,249 - HMPREF1058_RS02410 0.76 -1.8 196,269 - HMPREF1058_RS02410 0.77 -1.2 196,373 + HMPREF1058_RS02410 0.82 -2.3 196,373 + HMPREF1058_RS02410 0.82 -3.3 196,374 - HMPREF1058_RS02410 0.82 -0.0 196,374 - HMPREF1058_RS02410 0.82 -3.3 196,374 - HMPREF1058_RS02410 0.82 -1.8 196,374 - HMPREF1058_RS02410 0.82 -1.3 196,383 - HMPREF1058_RS02410 0.82 -2.1 196,486 + HMPREF1058_RS02410 0.87 -1.4 196,545 + HMPREF1058_RS02410 0.90 +0.2 196,546 - HMPREF1058_RS02410 0.90 -0.6 196,573 - -0.6 196,582 + -1.7 196,583 - -2.6 196,589 + -1.5 196,632 + -3.2 196,632 + -2.5 196,706 - -0.6 196,731 + -1.5 196,731 + +1.7 196,732 - -1.0 196,732 - -2.4 196,732 - -1.9 196,733 + -1.8 196,733 + +0.2 196,733 + +2.2 196,733 + +0.3 196,733 + -2.3 196,733 + +0.7 196,733 + -1.4 196,733 + -1.5 196,733 + -1.7 196,733 + +2.2 196,734 - -1.0 196,734 - -2.8 196,734 - -1.8 196,734 - -2.9 196,734 - -0.8 196,734 - -1.8 196,734 - -0.1 196,735 + -0.6 196,735 + +0.0 196,778 - +0.5 196,778 - -0.3 196,784 + -1.5 196,789 + -1.9 196,790 - -0.1 196,790 - +0.9 196,797 + -1.3 196,874 - -2.5 196,941 + +2.2 196,942 - -0.8 196,972 + HMPREF1058_RS02405 0.10 -2.3 196,977 - HMPREF1058_RS02405 0.11 -1.7 197,000 - HMPREF1058_RS02405 0.12 -2.4 197,022 - HMPREF1058_RS02405 0.13 -1.6 197,022 - HMPREF1058_RS02405 0.13 -1.8 197,271 - HMPREF1058_RS02405 0.26 -4.2 197,305 + HMPREF1058_RS02405 0.28 -1.3 197,306 - HMPREF1058_RS02405 0.28 -0.4 197,311 - HMPREF1058_RS02405 0.28 -1.5 197,438 + HMPREF1058_RS02405 0.35 -1.5 197,500 - HMPREF1058_RS02405 0.38 -1.4 197,522 + HMPREF1058_RS02405 0.39 -2.0 197,523 - HMPREF1058_RS02405 0.39 -1.8 197,556 - HMPREF1058_RS02405 0.41 -2.1 197,556 - HMPREF1058_RS02405 0.41 -1.8 197,604 + HMPREF1058_RS02405 0.44 +0.2 197,605 - HMPREF1058_RS02405 0.44 -3.5 197,605 - HMPREF1058_RS02405 0.44 -1.5 197,625 - HMPREF1058_RS02405 0.45 -1.6 197,690 + HMPREF1058_RS02405 0.48 -1.3
Or see this region's nucleotide sequence