Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01985 and HMPREF1058_RS01980 are separated by 16 nucleotides HMPREF1058_RS01980 and HMPREF1058_RS01975 overlap by 29 nucleotides HMPREF1058_RS01975 and HMPREF1058_RS01970 are separated by 148 nucleotides HMPREF1058_RS01970 and HMPREF1058_RS21540 are separated by 42 nucleotides HMPREF1058_RS21540 and HMPREF1058_RS01965 are separated by 51 nucleotides HMPREF1058_RS01965 and HMPREF1058_RS01960 are separated by 12 nucleotides
HMPREF1058_RS01985: HMPREF1058_RS01985 - transposase, at 3,712 to 4,704
_RS01985
HMPREF1058_RS01980: HMPREF1058_RS01980 - hypothetical protein, at 4,721 to 5,095
_RS01980
HMPREF1058_RS01975: HMPREF1058_RS01975 - hypothetical protein, at 5,067 to 5,333
_RS01975
HMPREF1058_RS01970: HMPREF1058_RS01970 - hypothetical protein, at 5,482 to 5,661
_RS01970
HMPREF1058_RS21540: HMPREF1058_RS21540 - hypothetical protein, at 5,704 to 5,856
_RS21540
HMPREF1058_RS01965: HMPREF1058_RS01965 - hypothetical protein, at 5,908 to 6,105
_RS01965
HMPREF1058_RS01960: HMPREF1058_RS01960 - hypothetical protein, at 6,118 to 6,405
_RS01960
Position (kb) 5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4.687 kb on + strand at 4.736 kb on - strand at 4.750 kb on + strand at 4.759 kb on + strand, within HMPREF1058_RS01980 at 4.772 kb on + strand, within HMPREF1058_RS01980 at 4.773 kb on - strand, within HMPREF1058_RS01980 at 4.774 kb on + strand, within HMPREF1058_RS01980 at 4.817 kb on - strand, within HMPREF1058_RS01980 at 4.817 kb on - strand, within HMPREF1058_RS01980 at 4.817 kb on - strand, within HMPREF1058_RS01980 at 4.822 kb on - strand, within HMPREF1058_RS01980 at 4.829 kb on - strand, within HMPREF1058_RS01980 at 4.829 kb on - strand, within HMPREF1058_RS01980 at 4.894 kb on + strand, within HMPREF1058_RS01980 at 4.927 kb on + strand, within HMPREF1058_RS01980 at 4.927 kb on + strand, within HMPREF1058_RS01980 at 4.959 kb on + strand, within HMPREF1058_RS01980 at 4.960 kb on - strand, within HMPREF1058_RS01980 at 4.988 kb on - strand, within HMPREF1058_RS01980 at 5.000 kb on - strand, within HMPREF1058_RS01980 at 5.097 kb on + strand, within HMPREF1058_RS01975 at 5.097 kb on + strand, within HMPREF1058_RS01975 at 5.098 kb on - strand, within HMPREF1058_RS01975 at 5.098 kb on - strand, within HMPREF1058_RS01975 at 5.245 kb on + strand, within HMPREF1058_RS01975 at 5.246 kb on - strand, within HMPREF1058_RS01975 at 5.246 kb on - strand, within HMPREF1058_RS01975 at 5.305 kb on - strand, within HMPREF1058_RS01975 at 5.305 kb on - strand, within HMPREF1058_RS01975 at 5.349 kb on - strand at 5.459 kb on + strand at 5.460 kb on - strand at 5.476 kb on - strand at 5.528 kb on + strand, within HMPREF1058_RS01970 at 5.529 kb on - strand, within HMPREF1058_RS01970 at 5.531 kb on + strand, within HMPREF1058_RS01970 at 5.573 kb on + strand, within HMPREF1058_RS01970 at 5.573 kb on + strand, within HMPREF1058_RS01970 at 5.596 kb on + strand, within HMPREF1058_RS01970 at 5.625 kb on + strand, within HMPREF1058_RS01970 at 5.695 kb on + strand at 5.696 kb on - strand at 5.696 kb on - strand at 5.898 kb on - strand at 5.898 kb on - strand at 6.109 kb on + strand at 6.179 kb on + strand, within HMPREF1058_RS01960 at 6.179 kb on + strand, within HMPREF1058_RS01960 at 6.180 kb on - strand, within HMPREF1058_RS01960 at 6.181 kb on + strand, within HMPREF1058_RS01960 at 6.181 kb on + strand, within HMPREF1058_RS01960 at 6.181 kb on + strand, within HMPREF1058_RS01960 at 6.306 kb on + strand, within HMPREF1058_RS01960 at 6.306 kb on + strand, within HMPREF1058_RS01960 at 6.307 kb on - strand, within HMPREF1058_RS01960
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 4,687 + +0.9 4,736 - -0.4 4,750 + -0.5 4,759 + HMPREF1058_RS01980 0.10 -0.5 4,772 + HMPREF1058_RS01980 0.14 +0.0 4,773 - HMPREF1058_RS01980 0.14 -0.3 4,774 + HMPREF1058_RS01980 0.14 -0.4 4,817 - HMPREF1058_RS01980 0.26 -3.3 4,817 - HMPREF1058_RS01980 0.26 -0.2 4,817 - HMPREF1058_RS01980 0.26 +0.4 4,822 - HMPREF1058_RS01980 0.27 -0.1 4,829 - HMPREF1058_RS01980 0.29 +0.2 4,829 - HMPREF1058_RS01980 0.29 -0.7 4,894 + HMPREF1058_RS01980 0.46 -1.3 4,927 + HMPREF1058_RS01980 0.55 -0.4 4,927 + HMPREF1058_RS01980 0.55 +0.3 4,959 + HMPREF1058_RS01980 0.63 +1.3 4,960 - HMPREF1058_RS01980 0.64 -0.4 4,988 - HMPREF1058_RS01980 0.71 +0.2 5,000 - HMPREF1058_RS01980 0.74 -2.0 5,097 + HMPREF1058_RS01975 0.11 +0.2 5,097 + HMPREF1058_RS01975 0.11 +0.7 5,098 - HMPREF1058_RS01975 0.12 +0.7 5,098 - HMPREF1058_RS01975 0.12 -0.8 5,245 + HMPREF1058_RS01975 0.67 -0.0 5,246 - HMPREF1058_RS01975 0.67 -0.7 5,246 - HMPREF1058_RS01975 0.67 +0.3 5,305 - HMPREF1058_RS01975 0.89 -2.1 5,305 - HMPREF1058_RS01975 0.89 -0.0 5,349 - -0.3 5,459 + +0.2 5,460 - -0.4 5,476 - +0.8 5,528 + HMPREF1058_RS01970 0.26 -0.7 5,529 - HMPREF1058_RS01970 0.26 +0.5 5,531 + HMPREF1058_RS01970 0.27 -0.7 5,573 + HMPREF1058_RS01970 0.51 +0.3 5,573 + HMPREF1058_RS01970 0.51 -1.0 5,596 + HMPREF1058_RS01970 0.63 -1.1 5,625 + HMPREF1058_RS01970 0.79 -0.8 5,695 + -1.5 5,696 - -0.6 5,696 - +0.5 5,898 - -1.0 5,898 - +0.7 6,109 + +0.7 6,179 + HMPREF1058_RS01960 0.21 -0.8 6,179 + HMPREF1058_RS01960 0.21 -0.4 6,180 - HMPREF1058_RS01960 0.22 -0.2 6,181 + HMPREF1058_RS01960 0.22 -0.8 6,181 + HMPREF1058_RS01960 0.22 +0.4 6,181 + HMPREF1058_RS01960 0.22 -1.7 6,306 + HMPREF1058_RS01960 0.65 +1.1 6,306 + HMPREF1058_RS01960 0.65 +1.3 6,307 - HMPREF1058_RS01960 0.66 +0.5
Or see this region's nucleotide sequence