Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01545 and HMPREF1058_RS01540 are separated by 4 nucleotides HMPREF1058_RS01540 and HMPREF1058_RS01535 are separated by 679 nucleotides
HMPREF1058_RS01545: HMPREF1058_RS01545 - bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase, at 96,530 to 97,711
_RS01545
HMPREF1058_RS01540: HMPREF1058_RS01540 - precorrin-3B C(17)-methyltransferase, at 97,716 to 99,122
_RS01540
HMPREF1058_RS01535: HMPREF1058_RS01535 - flavin reductase family protein, at 99,802 to 100,362
_RS01535
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -2
-1
0
1 at 96.737 kb on + strand, within HMPREF1058_RS01545 at 96.739 kb on + strand, within HMPREF1058_RS01545 at 96.979 kb on + strand, within HMPREF1058_RS01545 at 97.098 kb on - strand, within HMPREF1058_RS01545 at 97.154 kb on - strand, within HMPREF1058_RS01545 at 97.221 kb on + strand, within HMPREF1058_RS01545 at 97.222 kb on - strand, within HMPREF1058_RS01545 at 97.302 kb on - strand, within HMPREF1058_RS01545 at 97.375 kb on + strand, within HMPREF1058_RS01545 at 97.376 kb on - strand, within HMPREF1058_RS01545 at 97.376 kb on - strand, within HMPREF1058_RS01545 at 97.687 kb on + strand at 97.691 kb on + strand at 97.696 kb on + strand at 97.696 kb on + strand at 97.699 kb on - strand at 97.717 kb on + strand at 97.718 kb on - strand at 97.719 kb on + strand at 97.719 kb on + strand at 97.720 kb on - strand at 97.720 kb on - strand at 97.761 kb on - strand at 97.816 kb on - strand at 97.979 kb on - strand, within HMPREF1058_RS01540 at 97.979 kb on - strand, within HMPREF1058_RS01540 at 97.979 kb on - strand, within HMPREF1058_RS01540 at 97.981 kb on - strand, within HMPREF1058_RS01540 at 98.014 kb on - strand, within HMPREF1058_RS01540 at 98.014 kb on - strand, within HMPREF1058_RS01540 at 98.081 kb on - strand, within HMPREF1058_RS01540 at 98.081 kb on - strand, within HMPREF1058_RS01540 at 98.156 kb on + strand, within HMPREF1058_RS01540 at 98.189 kb on + strand, within HMPREF1058_RS01540 at 98.190 kb on - strand, within HMPREF1058_RS01540 at 98.226 kb on + strand, within HMPREF1058_RS01540 at 98.303 kb on + strand, within HMPREF1058_RS01540 at 98.345 kb on + strand, within HMPREF1058_RS01540 at 98.393 kb on - strand, within HMPREF1058_RS01540 at 98.460 kb on - strand, within HMPREF1058_RS01540 at 98.783 kb on + strand, within HMPREF1058_RS01540 at 98.793 kb on + strand, within HMPREF1058_RS01540 at 98.794 kb on - strand, within HMPREF1058_RS01540 at 98.889 kb on + strand, within HMPREF1058_RS01540 at 98.962 kb on - strand, within HMPREF1058_RS01540 at 98.962 kb on - strand, within HMPREF1058_RS01540 at 98.963 kb on + strand, within HMPREF1058_RS01540 at 98.986 kb on + strand at 99.007 kb on + strand at 99.011 kb on - strand at 99.015 kb on - strand at 99.015 kb on - strand at 99.051 kb on + strand at 99.066 kb on + strand at 99.068 kb on + strand at 99.106 kb on - strand at 99.128 kb on - strand at 99.131 kb on - strand at 99.139 kb on - strand at 99.350 kb on + strand at 99.350 kb on + strand at 99.470 kb on + strand at 99.497 kb on + strand at 99.497 kb on + strand at 99.498 kb on - strand at 99.498 kb on - strand at 99.539 kb on + strand at 99.661 kb on + strand at 99.662 kb on - strand at 99.785 kb on + strand at 99.786 kb on - strand at 99.895 kb on - strand, within HMPREF1058_RS01535 at 99.943 kb on + strand, within HMPREF1058_RS01535 at 99.958 kb on + strand, within HMPREF1058_RS01535
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 96,737 + HMPREF1058_RS01545 0.18 -0.4 96,739 + HMPREF1058_RS01545 0.18 -0.2 96,979 + HMPREF1058_RS01545 0.38 -1.5 97,098 - HMPREF1058_RS01545 0.48 +0.4 97,154 - HMPREF1058_RS01545 0.53 -1.7 97,221 + HMPREF1058_RS01545 0.58 -0.7 97,222 - HMPREF1058_RS01545 0.59 +1.0 97,302 - HMPREF1058_RS01545 0.65 +0.8 97,375 + HMPREF1058_RS01545 0.71 -0.5 97,376 - HMPREF1058_RS01545 0.72 -1.5 97,376 - HMPREF1058_RS01545 0.72 +0.5 97,687 + -0.4 97,691 + +0.9 97,696 + +0.4 97,696 + -0.6 97,699 - -0.7 97,717 + -0.4 97,718 - +0.6 97,719 + +1.4 97,719 + +0.6 97,720 - -1.7 97,720 - +0.3 97,761 - -1.5 97,816 - -1.2 97,979 - HMPREF1058_RS01540 0.19 -0.8 97,979 - HMPREF1058_RS01540 0.19 -0.6 97,979 - HMPREF1058_RS01540 0.19 -1.3 97,981 - HMPREF1058_RS01540 0.19 -0.4 98,014 - HMPREF1058_RS01540 0.21 -0.9 98,014 - HMPREF1058_RS01540 0.21 +0.1 98,081 - HMPREF1058_RS01540 0.26 -0.7 98,081 - HMPREF1058_RS01540 0.26 -0.8 98,156 + HMPREF1058_RS01540 0.31 -1.2 98,189 + HMPREF1058_RS01540 0.34 -0.7 98,190 - HMPREF1058_RS01540 0.34 -0.1 98,226 + HMPREF1058_RS01540 0.36 +0.1 98,303 + HMPREF1058_RS01540 0.42 -1.1 98,345 + HMPREF1058_RS01540 0.45 -1.2 98,393 - HMPREF1058_RS01540 0.48 -0.3 98,460 - HMPREF1058_RS01540 0.53 -0.2 98,783 + HMPREF1058_RS01540 0.76 -0.9 98,793 + HMPREF1058_RS01540 0.77 +0.4 98,794 - HMPREF1058_RS01540 0.77 +0.6 98,889 + HMPREF1058_RS01540 0.83 -1.2 98,962 - HMPREF1058_RS01540 0.89 -0.1 98,962 - HMPREF1058_RS01540 0.89 -0.9 98,963 + HMPREF1058_RS01540 0.89 -0.8 98,986 + +0.3 99,007 + -0.3 99,011 - +0.0 99,015 - -1.4 99,015 - -0.4 99,051 + -0.8 99,066 + -0.3 99,068 + -1.2 99,106 - -0.7 99,128 - -0.1 99,131 - -1.3 99,139 - +0.4 99,350 + -0.1 99,350 + +0.2 99,470 + -0.2 99,497 + +0.6 99,497 + +0.2 99,498 - -1.8 99,498 - +0.0 99,539 + +1.0 99,661 + +0.1 99,662 - -2.5 99,785 + -0.8 99,786 - -0.0 99,895 - HMPREF1058_RS01535 0.17 +0.6 99,943 + HMPREF1058_RS01535 0.25 -0.9 99,958 + HMPREF1058_RS01535 0.28 +0.8
Or see this region's nucleotide sequence