Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119995 and HMPREF1058_RS02555 are separated by 2 nucleotides HMPREF1058_RS02555 and HMPREF1058_RS0120000 are separated by 102 nucleotides HMPREF1058_RS0120000 and HMPREF1058_RS02550 are separated by 727 nucleotides
HMPREF1058_RS0119995: HMPREF1058_RS0119995 - DUF3795 domain-containing protein, at 155,459 to 155,803
_RS0119995
HMPREF1058_RS02555: HMPREF1058_RS02555 - DJ-1/PfpI family protein, at 155,806 to 156,423
_RS02555
HMPREF1058_RS0120000: HMPREF1058_RS0120000 - hypothetical protein, at 156,526 to 156,732
_RS0120000
HMPREF1058_RS02550: HMPREF1058_RS02550 - NUDIX domain-containing protein, at 157,460 to 157,960
_RS02550
Position (kb) 156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.563 kb on + strand, within HMPREF1058_RS0119995 at 155.683 kb on - strand, within HMPREF1058_RS0119995 at 155.727 kb on - strand, within HMPREF1058_RS0119995 at 155.727 kb on - strand, within HMPREF1058_RS0119995 at 155.728 kb on + strand, within HMPREF1058_RS0119995 at 155.806 kb on - strand at 155.824 kb on + strand at 155.824 kb on + strand at 155.824 kb on + strand at 155.825 kb on - strand at 155.895 kb on + strand, within HMPREF1058_RS02555 at 155.917 kb on + strand, within HMPREF1058_RS02555 at 155.917 kb on + strand, within HMPREF1058_RS02555 at 155.954 kb on + strand, within HMPREF1058_RS02555 at 155.989 kb on + strand, within HMPREF1058_RS02555 at 156.016 kb on + strand, within HMPREF1058_RS02555 at 156.016 kb on + strand, within HMPREF1058_RS02555 at 156.017 kb on - strand, within HMPREF1058_RS02555 at 156.033 kb on - strand, within HMPREF1058_RS02555 at 156.167 kb on + strand, within HMPREF1058_RS02555 at 156.167 kb on + strand, within HMPREF1058_RS02555 at 156.230 kb on - strand, within HMPREF1058_RS02555 at 156.362 kb on + strand at 156.428 kb on - strand at 156.513 kb on + strand at 156.514 kb on - strand at 156.550 kb on + strand, within HMPREF1058_RS0120000 at 156.562 kb on + strand, within HMPREF1058_RS0120000 at 156.679 kb on + strand, within HMPREF1058_RS0120000 at 156.680 kb on - strand, within HMPREF1058_RS0120000 at 156.796 kb on + strand at 156.820 kb on + strand at 156.820 kb on + strand at 156.876 kb on - strand at 156.931 kb on + strand at 156.976 kb on - strand at 156.983 kb on + strand at 156.983 kb on + strand at 157.092 kb on + strand at 157.100 kb on - strand at 157.191 kb on - strand at 157.227 kb on - strand at 157.230 kb on + strand at 157.231 kb on - strand at 157.231 kb on - strand at 157.253 kb on - strand at 157.389 kb on + strand at 157.396 kb on + strand at 157.396 kb on + strand at 157.593 kb on + strand, within HMPREF1058_RS02550 at 157.594 kb on - strand, within HMPREF1058_RS02550 at 157.614 kb on - strand, within HMPREF1058_RS02550 at 157.643 kb on + strand, within HMPREF1058_RS02550 at 157.645 kb on + strand, within HMPREF1058_RS02550 at 157.645 kb on + strand, within HMPREF1058_RS02550 at 157.645 kb on + strand, within HMPREF1058_RS02550 at 157.646 kb on - strand, within HMPREF1058_RS02550 at 157.647 kb on + strand, within HMPREF1058_RS02550 at 157.647 kb on + strand, within HMPREF1058_RS02550 at 157.647 kb on + strand, within HMPREF1058_RS02550 at 157.648 kb on - strand, within HMPREF1058_RS02550 at 157.652 kb on - strand, within HMPREF1058_RS02550 at 157.652 kb on - strand at 157.698 kb on - strand, within HMPREF1058_RS02550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 155,563 + HMPREF1058_RS0119995 0.30 -0.5 155,683 - HMPREF1058_RS0119995 0.65 +0.2 155,727 - HMPREF1058_RS0119995 0.78 -2.4 155,727 - HMPREF1058_RS0119995 0.78 +0.1 155,728 + HMPREF1058_RS0119995 0.78 +0.2 155,806 - -0.1 155,824 + -0.3 155,824 + +0.1 155,824 + +0.3 155,825 - -0.1 155,895 + HMPREF1058_RS02555 0.14 +0.1 155,917 + HMPREF1058_RS02555 0.18 -1.1 155,917 + HMPREF1058_RS02555 0.18 -0.0 155,954 + HMPREF1058_RS02555 0.24 +0.4 155,989 + HMPREF1058_RS02555 0.30 -1.0 156,016 + HMPREF1058_RS02555 0.34 +0.3 156,016 + HMPREF1058_RS02555 0.34 -0.2 156,017 - HMPREF1058_RS02555 0.34 -0.3 156,033 - HMPREF1058_RS02555 0.37 -0.2 156,167 + HMPREF1058_RS02555 0.58 -1.1 156,167 + HMPREF1058_RS02555 0.58 +1.4 156,230 - HMPREF1058_RS02555 0.69 -0.0 156,362 + -1.2 156,428 - -0.8 156,513 + +0.0 156,514 - +0.2 156,550 + HMPREF1058_RS0120000 0.12 -1.3 156,562 + HMPREF1058_RS0120000 0.17 -0.3 156,679 + HMPREF1058_RS0120000 0.74 -1.1 156,680 - HMPREF1058_RS0120000 0.74 -0.6 156,796 + +0.4 156,820 + -0.3 156,820 + +0.1 156,876 - +0.2 156,931 + -0.8 156,976 - -1.2 156,983 + +1.0 156,983 + -1.4 157,092 + +1.2 157,100 - -0.2 157,191 - +1.2 157,227 - +0.1 157,230 + -0.2 157,231 - +0.0 157,231 - -0.3 157,253 - +0.2 157,389 + +2.2 157,396 + +0.6 157,396 + +0.8 157,593 + HMPREF1058_RS02550 0.27 +0.2 157,594 - HMPREF1058_RS02550 0.27 -2.2 157,614 - HMPREF1058_RS02550 0.31 -0.5 157,643 + HMPREF1058_RS02550 0.37 +0.2 157,645 + HMPREF1058_RS02550 0.37 -0.5 157,645 + HMPREF1058_RS02550 0.37 -0.5 157,645 + HMPREF1058_RS02550 0.37 +1.2 157,646 - HMPREF1058_RS02550 0.37 -0.3 157,647 + HMPREF1058_RS02550 0.37 -0.3 157,647 + HMPREF1058_RS02550 0.37 -0.5 157,647 + HMPREF1058_RS02550 0.37 -0.8 157,648 - HMPREF1058_RS02550 0.38 -0.0 157,652 - HMPREF1058_RS02550 0.38 -0.1 157,652 - -0.8 157,698 - HMPREF1058_RS02550 0.48 -0.3
Or see this region's nucleotide sequence