Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS0119825

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05710 and HMPREF1058_RS0119825 are separated by 51 nucleotidesHMPREF1058_RS0119825 and HMPREF1058_RS05705 overlap by 4 nucleotides HMPREF1058_RS05710: HMPREF1058_RS05710 - virulence RhuM family protein, at 95,094 to 96,089 _RS05710 HMPREF1058_RS0119825: HMPREF1058_RS0119825 - DEAD/DEAH box helicase, at 96,141 to 97,817 _RS0119825 HMPREF1058_RS05705: HMPREF1058_RS05705 - DGQHR domain-containing protein, at 97,814 to 100,150 _RS05705 Position (kb) 96 97 98Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 95.168 kb on + strandat 95.173 kb on + strandat 95.173 kb on + strandat 95.291 kb on + strand, within HMPREF1058_RS05710at 95.310 kb on - strand, within HMPREF1058_RS05710at 95.312 kb on + strand, within HMPREF1058_RS05710at 95.324 kb on + strand, within HMPREF1058_RS05710at 95.324 kb on + strand, within HMPREF1058_RS05710at 95.325 kb on - strand, within HMPREF1058_RS05710at 95.417 kb on + strand, within HMPREF1058_RS05710at 95.468 kb on + strand, within HMPREF1058_RS05710at 95.486 kb on - strand, within HMPREF1058_RS05710at 95.581 kb on + strand, within HMPREF1058_RS05710at 95.603 kb on - strand, within HMPREF1058_RS05710at 95.603 kb on - strand, within HMPREF1058_RS05710at 95.604 kb on + strand, within HMPREF1058_RS05710at 95.604 kb on + strand, within HMPREF1058_RS05710at 95.605 kb on - strand, within HMPREF1058_RS05710at 95.605 kb on - strand, within HMPREF1058_RS05710at 95.605 kb on - strand, within HMPREF1058_RS05710at 95.631 kb on - strand, within HMPREF1058_RS05710at 95.855 kb on + strand, within HMPREF1058_RS05710at 95.856 kb on - strand, within HMPREF1058_RS05710at 95.856 kb on - strand, within HMPREF1058_RS05710at 95.857 kb on + strand, within HMPREF1058_RS05710at 95.857 kb on + strand, within HMPREF1058_RS05710at 95.857 kb on + strand, within HMPREF1058_RS05710at 95.857 kb on + strand, within HMPREF1058_RS05710at 95.859 kb on + strand, within HMPREF1058_RS05710at 95.898 kb on + strand, within HMPREF1058_RS05710at 95.913 kb on + strand, within HMPREF1058_RS05710at 95.934 kb on - strand, within HMPREF1058_RS05710at 96.027 kb on + strandat 96.028 kb on - strandat 96.031 kb on + strandat 96.032 kb on - strandat 96.033 kb on + strandat 96.061 kb on + strandat 96.061 kb on + strandat 96.061 kb on + strandat 96.104 kb on - strandat 96.105 kb on + strandat 96.106 kb on - strandat 96.112 kb on - strandat 96.150 kb on + strandat 96.151 kb on - strandat 96.151 kb on - strandat 96.226 kb on - strandat 96.226 kb on - strandat 96.228 kb on - strandat 96.311 kb on + strand, within HMPREF1058_RS0119825at 96.312 kb on - strand, within HMPREF1058_RS0119825at 96.345 kb on - strand, within HMPREF1058_RS0119825at 96.345 kb on - strand, within HMPREF1058_RS0119825at 96.345 kb on - strand, within HMPREF1058_RS0119825at 96.348 kb on + strand, within HMPREF1058_RS0119825at 96.380 kb on + strand, within HMPREF1058_RS0119825at 96.440 kb on + strand, within HMPREF1058_RS0119825at 96.564 kb on + strand, within HMPREF1058_RS0119825at 96.565 kb on - strand, within HMPREF1058_RS0119825at 96.566 kb on + strand, within HMPREF1058_RS0119825at 96.611 kb on - strand, within HMPREF1058_RS0119825at 96.611 kb on - strand, within HMPREF1058_RS0119825at 96.611 kb on - strand, within HMPREF1058_RS0119825at 96.621 kb on - strand, within HMPREF1058_RS0119825at 96.621 kb on - strand, within HMPREF1058_RS0119825at 96.630 kb on - strand, within HMPREF1058_RS0119825at 96.659 kb on - strand, within HMPREF1058_RS0119825at 96.727 kb on + strand, within HMPREF1058_RS0119825at 96.727 kb on + strand, within HMPREF1058_RS0119825at 96.728 kb on - strand, within HMPREF1058_RS0119825at 96.751 kb on - strand, within HMPREF1058_RS0119825at 96.924 kb on + strand, within HMPREF1058_RS0119825at 96.925 kb on - strand, within HMPREF1058_RS0119825at 96.925 kb on - strand, within HMPREF1058_RS0119825at 96.978 kb on + strand, within HMPREF1058_RS0119825at 96.978 kb on + strand, within HMPREF1058_RS0119825at 97.006 kb on - strand, within HMPREF1058_RS0119825at 97.016 kb on + strand, within HMPREF1058_RS0119825at 97.017 kb on - strand, within HMPREF1058_RS0119825at 97.017 kb on - strand, within HMPREF1058_RS0119825at 97.035 kb on - strand, within HMPREF1058_RS0119825at 97.036 kb on + strand, within HMPREF1058_RS0119825at 97.036 kb on + strand, within HMPREF1058_RS0119825at 97.040 kb on + strand, within HMPREF1058_RS0119825at 97.073 kb on - strand, within HMPREF1058_RS0119825at 97.073 kb on - strand, within HMPREF1058_RS0119825at 97.131 kb on - strand, within HMPREF1058_RS0119825at 97.149 kb on + strand, within HMPREF1058_RS0119825at 97.149 kb on + strand, within HMPREF1058_RS0119825at 97.164 kb on - strand, within HMPREF1058_RS0119825at 97.200 kb on - strand, within HMPREF1058_RS0119825at 97.213 kb on + strand, within HMPREF1058_RS0119825at 97.214 kb on - strand, within HMPREF1058_RS0119825at 97.219 kb on + strand, within HMPREF1058_RS0119825at 97.245 kb on - strand, within HMPREF1058_RS0119825at 97.254 kb on - strand, within HMPREF1058_RS0119825at 97.272 kb on - strand, within HMPREF1058_RS0119825at 97.273 kb on + strandat 97.273 kb on + strand, within HMPREF1058_RS0119825at 97.304 kb on + strand, within HMPREF1058_RS0119825at 97.305 kb on - strand, within HMPREF1058_RS0119825at 97.414 kb on - strand, within HMPREF1058_RS0119825at 97.428 kb on - strand, within HMPREF1058_RS0119825at 97.530 kb on + strand, within HMPREF1058_RS0119825at 97.566 kb on - strand, within HMPREF1058_RS0119825at 97.592 kb on + strand, within HMPREF1058_RS0119825at 97.625 kb on + strandat 97.629 kb on - strand, within HMPREF1058_RS0119825at 97.646 kb on + strand, within HMPREF1058_RS0119825at 97.711 kb on - strandat 97.805 kb on + strandat 97.805 kb on + strandat 97.916 kb on - strandat 97.916 kb on - strandat 97.919 kb on - strandat 97.921 kb on - strandat 97.927 kb on + strandat 97.946 kb on - strandat 97.980 kb on - strandat 98.034 kb on - strandat 98.044 kb on + strandat 98.140 kb on + strand, within HMPREF1058_RS05705at 98.141 kb on - strand, within HMPREF1058_RS05705at 98.141 kb on - strand, within HMPREF1058_RS05705at 98.162 kb on - strand, within HMPREF1058_RS05705at 98.181 kb on + strand, within HMPREF1058_RS05705at 98.181 kb on + strand, within HMPREF1058_RS05705at 98.198 kb on - strand, within HMPREF1058_RS05705at 98.217 kb on - strand, within HMPREF1058_RS05705at 98.218 kb on + strand, within HMPREF1058_RS05705at 98.344 kb on - strand, within HMPREF1058_RS05705at 98.380 kb on + strand, within HMPREF1058_RS05705at 98.408 kb on + strand, within HMPREF1058_RS05705at 98.409 kb on - strand, within HMPREF1058_RS05705at 98.409 kb on - strand, within HMPREF1058_RS05705at 98.410 kb on + strand, within HMPREF1058_RS05705at 98.416 kb on + strand, within HMPREF1058_RS05705at 98.427 kb on + strand, within HMPREF1058_RS05705at 98.427 kb on + strand, within HMPREF1058_RS05705at 98.544 kb on - strand, within HMPREF1058_RS05705at 98.554 kb on - strand, within HMPREF1058_RS05705at 98.557 kb on + strand, within HMPREF1058_RS05705at 98.683 kb on + strand, within HMPREF1058_RS05705at 98.709 kb on + strand, within HMPREF1058_RS05705at 98.711 kb on + strand, within HMPREF1058_RS05705at 98.718 kb on - strand, within HMPREF1058_RS05705at 98.756 kb on - strand, within HMPREF1058_RS05705

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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95,168 + -1.9
95,173 + -0.5
95,173 + -0.9
95,291 + HMPREF1058_RS05710 0.20 -0.8
95,310 - HMPREF1058_RS05710 0.22 -0.1
95,312 + HMPREF1058_RS05710 0.22 -0.9
95,324 + HMPREF1058_RS05710 0.23 +1.7
95,324 + HMPREF1058_RS05710 0.23 +1.8
95,325 - HMPREF1058_RS05710 0.23 -0.0
95,417 + HMPREF1058_RS05710 0.32 -1.8
95,468 + HMPREF1058_RS05710 0.38 +0.3
95,486 - HMPREF1058_RS05710 0.39 -0.8
95,581 + HMPREF1058_RS05710 0.49 +0.8
95,603 - HMPREF1058_RS05710 0.51 +0.3
95,603 - HMPREF1058_RS05710 0.51 -0.3
95,604 + HMPREF1058_RS05710 0.51 +1.6
95,604 + HMPREF1058_RS05710 0.51 -2.3
95,605 - HMPREF1058_RS05710 0.51 +0.1
95,605 - HMPREF1058_RS05710 0.51 -0.6
95,605 - HMPREF1058_RS05710 0.51 +0.9
95,631 - HMPREF1058_RS05710 0.54 -0.6
95,855 + HMPREF1058_RS05710 0.76 -0.6
95,856 - HMPREF1058_RS05710 0.77 -0.1
95,856 - HMPREF1058_RS05710 0.77 +0.4
95,857 + HMPREF1058_RS05710 0.77 +1.5
95,857 + HMPREF1058_RS05710 0.77 +0.3
95,857 + HMPREF1058_RS05710 0.77 +0.7
95,857 + HMPREF1058_RS05710 0.77 +1.5
95,859 + HMPREF1058_RS05710 0.77 +0.1
95,898 + HMPREF1058_RS05710 0.81 +0.4
95,913 + HMPREF1058_RS05710 0.82 +0.3
95,934 - HMPREF1058_RS05710 0.84 -0.0
96,027 + +1.2
96,028 - -0.4
96,031 + +0.9
96,032 - -0.4
96,033 + +0.0
96,061 + +0.4
96,061 + +0.1
96,061 + -0.0
96,104 - -1.6
96,105 + -0.8
96,106 - -0.3
96,112 - +0.0
96,150 + -1.1
96,151 - -0.7
96,151 - -0.5
96,226 - -2.6
96,226 - -0.7
96,228 - -0.1
96,311 + HMPREF1058_RS0119825 0.10 -1.2
96,312 - HMPREF1058_RS0119825 0.10 -1.1
96,345 - HMPREF1058_RS0119825 0.12 -3.2
96,345 - HMPREF1058_RS0119825 0.12 -0.6
96,345 - HMPREF1058_RS0119825 0.12 +0.6
96,348 + HMPREF1058_RS0119825 0.12 -0.0
96,380 + HMPREF1058_RS0119825 0.14 -1.5
96,440 + HMPREF1058_RS0119825 0.18 -1.0
96,564 + HMPREF1058_RS0119825 0.25 -0.9
96,565 - HMPREF1058_RS0119825 0.25 -1.4
96,566 + HMPREF1058_RS0119825 0.25 -1.9
96,611 - HMPREF1058_RS0119825 0.28 -0.3
96,611 - HMPREF1058_RS0119825 0.28 -0.1
96,611 - HMPREF1058_RS0119825 0.28 -1.5
96,621 - HMPREF1058_RS0119825 0.29 -3.8
96,621 - HMPREF1058_RS0119825 0.29 -1.2
96,630 - HMPREF1058_RS0119825 0.29 -1.0
96,659 - HMPREF1058_RS0119825 0.31 -2.8
96,727 + HMPREF1058_RS0119825 0.35 -0.8
96,727 + HMPREF1058_RS0119825 0.35 -2.3
96,728 - HMPREF1058_RS0119825 0.35 -2.8
96,751 - HMPREF1058_RS0119825 0.36 -1.0
96,924 + HMPREF1058_RS0119825 0.47 -0.0
96,925 - HMPREF1058_RS0119825 0.47 -1.7
96,925 - HMPREF1058_RS0119825 0.47 -1.6
96,978 + HMPREF1058_RS0119825 0.50 -1.4
96,978 + HMPREF1058_RS0119825 0.50 -1.9
97,006 - HMPREF1058_RS0119825 0.52 -1.2
97,016 + HMPREF1058_RS0119825 0.52 -0.4
97,017 - HMPREF1058_RS0119825 0.52 -1.9
97,017 - HMPREF1058_RS0119825 0.52 -0.8
97,035 - HMPREF1058_RS0119825 0.53 +0.6
97,036 + HMPREF1058_RS0119825 0.53 -2.4
97,036 + HMPREF1058_RS0119825 0.53 -2.5
97,040 + HMPREF1058_RS0119825 0.54 -2.9
97,073 - HMPREF1058_RS0119825 0.56 -1.1
97,073 - HMPREF1058_RS0119825 0.56 -0.2
97,131 - HMPREF1058_RS0119825 0.59 -2.2
97,149 + HMPREF1058_RS0119825 0.60 -1.5
97,149 + HMPREF1058_RS0119825 0.60 -0.2
97,164 - HMPREF1058_RS0119825 0.61 -3.1
97,200 - HMPREF1058_RS0119825 0.63 -1.7
97,213 + HMPREF1058_RS0119825 0.64 -2.0
97,214 - HMPREF1058_RS0119825 0.64 -1.6
97,219 + HMPREF1058_RS0119825 0.64 -2.9
97,245 - HMPREF1058_RS0119825 0.66 +0.1
97,254 - HMPREF1058_RS0119825 0.66 -0.8
97,272 - HMPREF1058_RS0119825 0.67 -0.8
97,273 + -0.9
97,273 + HMPREF1058_RS0119825 0.68 -1.4
97,304 + HMPREF1058_RS0119825 0.69 -1.1
97,305 - HMPREF1058_RS0119825 0.69 +0.2
97,414 - HMPREF1058_RS0119825 0.76 -0.7
97,428 - HMPREF1058_RS0119825 0.77 -0.9
97,530 + HMPREF1058_RS0119825 0.83 -1.2
97,566 - HMPREF1058_RS0119825 0.85 -1.7
97,592 + HMPREF1058_RS0119825 0.87 +2.2
97,625 + +0.4
97,629 - HMPREF1058_RS0119825 0.89 -2.0
97,646 + HMPREF1058_RS0119825 0.90 -0.2
97,711 - -1.7
97,805 + -0.7
97,805 + +0.6
97,916 - +0.0
97,916 - -0.4
97,919 - +0.8
97,921 - -0.4
97,927 + -1.2
97,946 - +0.1
97,980 - +2.0
98,034 - +0.2
98,044 + +0.1
98,140 + HMPREF1058_RS05705 0.14 -0.4
98,141 - HMPREF1058_RS05705 0.14 -0.8
98,141 - HMPREF1058_RS05705 0.14 -0.8
98,162 - HMPREF1058_RS05705 0.15 -0.4
98,181 + HMPREF1058_RS05705 0.16 +0.4
98,181 + HMPREF1058_RS05705 0.16 -0.5
98,198 - HMPREF1058_RS05705 0.16 -0.3
98,217 - HMPREF1058_RS05705 0.17 +0.9
98,218 + HMPREF1058_RS05705 0.17 +0.8
98,344 - HMPREF1058_RS05705 0.23 +0.8
98,380 + HMPREF1058_RS05705 0.24 +0.6
98,408 + HMPREF1058_RS05705 0.25 +0.6
98,409 - HMPREF1058_RS05705 0.25 +0.0
98,409 - HMPREF1058_RS05705 0.25 +1.1
98,410 + HMPREF1058_RS05705 0.26 -0.4
98,416 + HMPREF1058_RS05705 0.26 -0.7
98,427 + HMPREF1058_RS05705 0.26 -2.2
98,427 + HMPREF1058_RS05705 0.26 +0.4
98,544 - HMPREF1058_RS05705 0.31 +0.5
98,554 - HMPREF1058_RS05705 0.32 +0.1
98,557 + HMPREF1058_RS05705 0.32 +0.5
98,683 + HMPREF1058_RS05705 0.37 -0.4
98,709 + HMPREF1058_RS05705 0.38 +0.1
98,711 + HMPREF1058_RS05705 0.38 -0.7
98,718 - HMPREF1058_RS05705 0.39 -0.6
98,756 - HMPREF1058_RS05705 0.40 +0.1

Or see this region's nucleotide sequence