Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS0119685

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS09885 and HMPREF1058_RS0119685 overlap by 4 nucleotidesHMPREF1058_RS0119685 and HMPREF1058_RS09880 are separated by 10 nucleotidesHMPREF1058_RS09880 and HMPREF1058_RS09875 are separated by 201 nucleotides HMPREF1058_RS09885: HMPREF1058_RS09885 - TraG family conjugative transposon ATPase, at 765,390 to 767,894 _RS09885 HMPREF1058_RS0119685: HMPREF1058_RS0119685 - DUF4133 domain-containing protein, at 767,891 to 768,223 _RS0119685 HMPREF1058_RS09880: HMPREF1058_RS09880 - DUF4134 domain-containing protein, at 768,234 to 768,545 _RS09880 HMPREF1058_RS09875: HMPREF1058_RS09875 - hypothetical protein, at 768,747 to 769,466 _RS09875 Position (kb) 767 768 769Strain fitness (log2 ratio) -1 0 1at 767.086 kb on + strand, within HMPREF1058_RS09885at 767.095 kb on + strand, within HMPREF1058_RS09885at 767.095 kb on + strand, within HMPREF1058_RS09885at 767.560 kb on + strand, within HMPREF1058_RS09885at 768.035 kb on + strand, within HMPREF1058_RS0119685at 768.223 kb on + strandat 768.223 kb on + strandat 768.223 kb on + strandat 768.418 kb on + strand, within HMPREF1058_RS09880at 768.501 kb on - strand, within HMPREF1058_RS09880at 768.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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767,086 + HMPREF1058_RS09885 0.68 -0.3
767,095 + HMPREF1058_RS09885 0.68 -0.9
767,095 + HMPREF1058_RS09885 0.68 -0.6
767,560 + HMPREF1058_RS09885 0.87 -0.7
768,035 + HMPREF1058_RS0119685 0.43 -0.7
768,223 + -0.4
768,223 + -0.6
768,223 + -0.1
768,418 + HMPREF1058_RS09880 0.59 -0.4
768,501 - HMPREF1058_RS09880 0.86 -0.6
768,750 + -0.2

Or see this region's nucleotide sequence