Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21380 and HMPREF1058_RS19065 are separated by 214 nucleotides HMPREF1058_RS19065 and HMPREF1058_RS19060 overlap by 4 nucleotides HMPREF1058_RS19060 and HMPREF1058_RS0119250 are separated by 13 nucleotides HMPREF1058_RS0119250 and HMPREF1058_RS19055 are separated by 75 nucleotides HMPREF1058_RS19055 and HMPREF1058_RS19050 are separated by 6 nucleotides HMPREF1058_RS19050 and HMPREF1058_RS20335 overlap by 11 nucleotides HMPREF1058_RS20335 and HMPREF1058_RS19045 are separated by 5 nucleotides
HMPREF1058_RS21380: HMPREF1058_RS21380 - hypothetical protein, at 27,326 to 27,499
_RS21380
HMPREF1058_RS19065: HMPREF1058_RS19065 - helix-turn-helix domain-containing protein, at 27,714 to 28,025
_RS19065
HMPREF1058_RS19060: HMPREF1058_RS19060 - type II toxin-antitoxin system RelE/ParE family toxin, at 28,022 to 28,387
_RS19060
HMPREF1058_RS0119250: HMPREF1058_RS0119250 - hypothetical protein, at 28,401 to 28,688
_RS0119250
HMPREF1058_RS19055: HMPREF1058_RS19055 - hypothetical protein, at 28,764 to 29,039
_RS19055
HMPREF1058_RS19050: HMPREF1058_RS19050 - hypothetical protein, at 29,046 to 29,246
_RS19050
HMPREF1058_RS20335: HMPREF1058_RS20335 - DpnD/PcfM family protein, at 29,236 to 29,412
_RS20335
HMPREF1058_RS19045: HMPREF1058_RS19045 - hypothetical protein, at 29,418 to 29,828
_RS19045
Position (kb) 28
29 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.472 kb on - strand, within HMPREF1058_RS21380 at 27.481 kb on + strand, within HMPREF1058_RS21380 at 27.514 kb on - strand at 27.514 kb on - strand at 27.523 kb on + strand at 27.524 kb on - strand at 27.526 kb on + strand at 27.527 kb on - strand at 27.527 kb on - strand at 28.128 kb on - strand, within HMPREF1058_RS19060 at 28.204 kb on - strand, within HMPREF1058_RS19060 at 28.206 kb on - strand, within HMPREF1058_RS19060 at 28.230 kb on - strand, within HMPREF1058_RS19060 at 28.230 kb on - strand, within HMPREF1058_RS19060 at 28.232 kb on - strand, within HMPREF1058_RS19060 at 28.234 kb on - strand, within HMPREF1058_RS19060 at 28.234 kb on - strand, within HMPREF1058_RS19060 at 28.239 kb on - strand, within HMPREF1058_RS19060 at 28.252 kb on - strand, within HMPREF1058_RS19060 at 28.252 kb on - strand, within HMPREF1058_RS19060 at 28.252 kb on - strand, within HMPREF1058_RS19060 at 28.318 kb on - strand, within HMPREF1058_RS19060 at 28.356 kb on - strand at 28.411 kb on - strand at 28.413 kb on - strand at 28.439 kb on + strand, within HMPREF1058_RS0119250 at 28.439 kb on + strand, within HMPREF1058_RS0119250 at 28.439 kb on + strand, within HMPREF1058_RS0119250 at 28.440 kb on - strand, within HMPREF1058_RS0119250 at 28.479 kb on + strand, within HMPREF1058_RS0119250 at 28.532 kb on - strand, within HMPREF1058_RS0119250 at 28.713 kb on - strand at 28.737 kb on + strand at 28.757 kb on + strand at 28.789 kb on + strand at 28.817 kb on - strand, within HMPREF1058_RS19055 at 28.857 kb on - strand, within HMPREF1058_RS19055 at 28.877 kb on - strand, within HMPREF1058_RS19055 at 28.887 kb on - strand, within HMPREF1058_RS19055 at 28.900 kb on + strand, within HMPREF1058_RS19055 at 28.901 kb on - strand, within HMPREF1058_RS19055 at 28.998 kb on + strand, within HMPREF1058_RS19055 at 28.999 kb on - strand, within HMPREF1058_RS19055 at 28.999 kb on - strand at 29.235 kb on - strand at 29.293 kb on - strand, within HMPREF1058_RS20335 at 29.369 kb on - strand, within HMPREF1058_RS20335 at 29.376 kb on + strand, within HMPREF1058_RS20335 at 29.389 kb on + strand, within HMPREF1058_RS20335 at 29.389 kb on + strand, within HMPREF1058_RS20335 at 29.428 kb on - strand at 29.481 kb on - strand, within HMPREF1058_RS19045 at 29.508 kb on - strand, within HMPREF1058_RS19045 at 29.538 kb on + strand, within HMPREF1058_RS19045 at 29.538 kb on + strand, within HMPREF1058_RS19045 at 29.559 kb on - strand, within HMPREF1058_RS19045 at 29.577 kb on + strand, within HMPREF1058_RS19045 at 29.599 kb on + strand, within HMPREF1058_RS19045 at 29.668 kb on - strand, within HMPREF1058_RS19045 at 29.668 kb on - strand, within HMPREF1058_RS19045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 27,472 - HMPREF1058_RS21380 0.84 -0.6 27,481 + HMPREF1058_RS21380 0.89 +1.4 27,514 - -0.3 27,514 - -0.8 27,523 + -0.6 27,524 - -1.7 27,526 + -0.7 27,527 - +2.2 27,527 - +1.0 28,128 - HMPREF1058_RS19060 0.29 +0.9 28,204 - HMPREF1058_RS19060 0.50 -0.8 28,206 - HMPREF1058_RS19060 0.50 +0.0 28,230 - HMPREF1058_RS19060 0.57 -0.4 28,230 - HMPREF1058_RS19060 0.57 -0.0 28,232 - HMPREF1058_RS19060 0.57 +0.1 28,234 - HMPREF1058_RS19060 0.58 -0.4 28,234 - HMPREF1058_RS19060 0.58 +0.1 28,239 - HMPREF1058_RS19060 0.59 +0.3 28,252 - HMPREF1058_RS19060 0.63 -0.2 28,252 - HMPREF1058_RS19060 0.63 +0.1 28,252 - HMPREF1058_RS19060 0.63 -1.4 28,318 - HMPREF1058_RS19060 0.81 -0.5 28,356 - +2.2 28,411 - -1.8 28,413 - -0.9 28,439 + HMPREF1058_RS0119250 0.13 -0.4 28,439 + HMPREF1058_RS0119250 0.13 -2.3 28,439 + HMPREF1058_RS0119250 0.13 +0.1 28,440 - HMPREF1058_RS0119250 0.14 -0.6 28,479 + HMPREF1058_RS0119250 0.27 +0.2 28,532 - HMPREF1058_RS0119250 0.45 -1.2 28,713 - -1.0 28,737 + +1.4 28,757 + +2.2 28,789 + -0.1 28,817 - HMPREF1058_RS19055 0.19 +0.2 28,857 - HMPREF1058_RS19055 0.34 +0.6 28,877 - HMPREF1058_RS19055 0.41 -0.2 28,887 - HMPREF1058_RS19055 0.45 -0.2 28,900 + HMPREF1058_RS19055 0.49 +1.7 28,901 - HMPREF1058_RS19055 0.50 -0.9 28,998 + HMPREF1058_RS19055 0.85 +2.2 28,999 - HMPREF1058_RS19055 0.85 -0.4 28,999 - -0.6 29,235 - -0.8 29,293 - HMPREF1058_RS20335 0.32 -0.1 29,369 - HMPREF1058_RS20335 0.75 -0.6 29,376 + HMPREF1058_RS20335 0.79 -0.7 29,389 + HMPREF1058_RS20335 0.86 -0.3 29,389 + HMPREF1058_RS20335 0.86 -0.4 29,428 - -0.2 29,481 - HMPREF1058_RS19045 0.15 -1.2 29,508 - HMPREF1058_RS19045 0.22 -1.0 29,538 + HMPREF1058_RS19045 0.29 +0.2 29,538 + HMPREF1058_RS19045 0.29 -1.1 29,559 - HMPREF1058_RS19045 0.34 +0.8 29,577 + HMPREF1058_RS19045 0.39 -0.3 29,599 + HMPREF1058_RS19045 0.44 +0.4 29,668 - HMPREF1058_RS19045 0.61 +0.0 29,668 - HMPREF1058_RS19045 0.61 -0.3
Or see this region's nucleotide sequence