Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00600

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00610 and HMPREF1058_RS00605 are separated by 41 nucleotidesHMPREF1058_RS00605 and HMPREF1058_RS00600 are separated by 106 nucleotidesHMPREF1058_RS00600 and HMPREF1058_RS00595 are separated by 175 nucleotidesHMPREF1058_RS00595 and HMPREF1058_RS00590 are separated by 87 nucleotides HMPREF1058_RS00610: HMPREF1058_RS00610 - DsbA family protein, at 36,315 to 36,926 _RS00610 HMPREF1058_RS00605: HMPREF1058_RS00605 - prolipoprotein diacylglyceryl transferase, at 36,968 to 37,774 _RS00605 HMPREF1058_RS00600: HMPREF1058_RS00600 - diaminopimelate dehydrogenase, at 37,881 to 38,780 _RS00600 HMPREF1058_RS00595: HMPREF1058_RS00595 - Holliday junction branch migration protein RuvA, at 38,956 to 39,549 _RS00595 HMPREF1058_RS00590: HMPREF1058_RS00590 - hypothetical protein, at 39,637 to 40,461 _RS00590 Position (kb) 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1at 36.903 kb on + strandat 36.903 kb on + strandat 36.995 kb on + strandat 37.002 kb on + strandat 37.043 kb on + strandat 37.049 kb on - strand, within HMPREF1058_RS00605at 37.121 kb on + strand, within HMPREF1058_RS00605at 37.123 kb on + strand, within HMPREF1058_RS00605at 37.124 kb on - strand, within HMPREF1058_RS00605at 37.133 kb on + strand, within HMPREF1058_RS00605at 37.134 kb on - strand, within HMPREF1058_RS00605at 37.170 kb on + strand, within HMPREF1058_RS00605at 37.170 kb on + strand, within HMPREF1058_RS00605at 37.171 kb on - strand, within HMPREF1058_RS00605at 37.171 kb on - strand, within HMPREF1058_RS00605at 37.174 kb on + strand, within HMPREF1058_RS00605at 37.174 kb on + strand, within HMPREF1058_RS00605at 37.175 kb on - strand, within HMPREF1058_RS00605at 37.175 kb on - strand, within HMPREF1058_RS00605at 37.175 kb on - strand, within HMPREF1058_RS00605at 37.175 kb on - strand, within HMPREF1058_RS00605at 37.175 kb on - strand, within HMPREF1058_RS00605at 37.175 kb on - strand, within HMPREF1058_RS00605at 37.179 kb on + strand, within HMPREF1058_RS00605at 37.328 kb on + strand, within HMPREF1058_RS00605at 37.548 kb on + strand, within HMPREF1058_RS00605at 37.548 kb on + strand, within HMPREF1058_RS00605at 37.728 kb on - strandat 37.732 kb on + strandat 37.737 kb on - strandat 37.737 kb on - strandat 37.741 kb on + strandat 37.757 kb on + strandat 37.757 kb on + strandat 37.762 kb on + strandat 37.763 kb on - strandat 37.781 kb on - strandat 37.831 kb on + strandat 37.883 kb on - strandat 37.884 kb on + strandat 37.952 kb on + strandat 37.952 kb on + strandat 37.952 kb on + strandat 37.953 kb on - strandat 38.024 kb on + strand, within HMPREF1058_RS00600at 38.028 kb on - strand, within HMPREF1058_RS00600at 38.161 kb on - strand, within HMPREF1058_RS00600at 38.230 kb on + strand, within HMPREF1058_RS00600at 38.231 kb on - strand, within HMPREF1058_RS00600at 38.231 kb on - strand, within HMPREF1058_RS00600at 38.231 kb on - strand, within HMPREF1058_RS00600at 38.231 kb on - strand, within HMPREF1058_RS00600at 38.353 kb on + strand, within HMPREF1058_RS00600at 38.353 kb on + strand, within HMPREF1058_RS00600at 38.354 kb on - strand, within HMPREF1058_RS00600at 38.357 kb on + strand, within HMPREF1058_RS00600at 38.358 kb on - strandat 38.358 kb on - strand, within HMPREF1058_RS00600at 38.358 kb on - strand, within HMPREF1058_RS00600at 38.358 kb on - strand, within HMPREF1058_RS00600at 38.358 kb on - strand, within HMPREF1058_RS00600at 38.358 kb on - strand, within HMPREF1058_RS00600at 38.435 kb on + strand, within HMPREF1058_RS00600at 38.514 kb on - strand, within HMPREF1058_RS00600at 38.514 kb on - strand, within HMPREF1058_RS00600at 38.518 kb on - strand, within HMPREF1058_RS00600at 38.616 kb on + strand, within HMPREF1058_RS00600at 38.618 kb on + strand, within HMPREF1058_RS00600at 38.619 kb on - strand, within HMPREF1058_RS00600at 38.728 kb on - strandat 38.893 kb on + strandat 38.960 kb on + strandat 39.054 kb on + strand, within HMPREF1058_RS00595at 39.085 kb on - strand, within HMPREF1058_RS00595at 39.096 kb on + strand, within HMPREF1058_RS00595at 39.124 kb on + strand, within HMPREF1058_RS00595at 39.128 kb on + strand, within HMPREF1058_RS00595at 39.129 kb on - strand, within HMPREF1058_RS00595at 39.326 kb on + strand, within HMPREF1058_RS00595at 39.327 kb on - strand, within HMPREF1058_RS00595at 39.548 kb on - strandat 39.548 kb on - strandat 39.556 kb on + strandat 39.557 kb on - strandat 39.638 kb on + strandat 39.639 kb on - strandat 39.639 kb on - strandat 39.705 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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36,903 + +0.2
36,903 + +0.0
36,995 + -0.3
37,002 + +0.4
37,043 + -0.1
37,049 - HMPREF1058_RS00605 0.10 +0.0
37,121 + HMPREF1058_RS00605 0.19 +0.1
37,123 + HMPREF1058_RS00605 0.19 -1.5
37,124 - HMPREF1058_RS00605 0.19 -0.3
37,133 + HMPREF1058_RS00605 0.20 -0.1
37,134 - HMPREF1058_RS00605 0.21 -0.7
37,170 + HMPREF1058_RS00605 0.25 -0.2
37,170 + HMPREF1058_RS00605 0.25 -1.2
37,171 - HMPREF1058_RS00605 0.25 +0.6
37,171 - HMPREF1058_RS00605 0.25 +0.1
37,174 + HMPREF1058_RS00605 0.26 -1.9
37,174 + HMPREF1058_RS00605 0.26 -0.8
37,175 - HMPREF1058_RS00605 0.26 -0.4
37,175 - HMPREF1058_RS00605 0.26 -0.2
37,175 - HMPREF1058_RS00605 0.26 -0.2
37,175 - HMPREF1058_RS00605 0.26 -1.2
37,175 - HMPREF1058_RS00605 0.26 -0.2
37,175 - HMPREF1058_RS00605 0.26 -1.7
37,179 + HMPREF1058_RS00605 0.26 +0.6
37,328 + HMPREF1058_RS00605 0.45 +1.3
37,548 + HMPREF1058_RS00605 0.72 +1.0
37,548 + HMPREF1058_RS00605 0.72 +0.6
37,728 - -0.8
37,732 + +0.6
37,737 - -0.6
37,737 - +0.2
37,741 + -0.4
37,757 + -0.3
37,757 + +0.6
37,762 + -0.4
37,763 - +1.6
37,781 - +1.0
37,831 + +0.2
37,883 - +1.0
37,884 + -0.7
37,952 + -2.1
37,952 + -0.2
37,952 + -1.4
37,953 - -1.2
38,024 + HMPREF1058_RS00600 0.16 -0.8
38,028 - HMPREF1058_RS00600 0.16 -0.7
38,161 - HMPREF1058_RS00600 0.31 -1.2
38,230 + HMPREF1058_RS00600 0.39 -0.3
38,231 - HMPREF1058_RS00600 0.39 -0.5
38,231 - HMPREF1058_RS00600 0.39 -1.5
38,231 - HMPREF1058_RS00600 0.39 -2.3
38,231 - HMPREF1058_RS00600 0.39 -0.9
38,353 + HMPREF1058_RS00600 0.52 -3.0
38,353 + HMPREF1058_RS00600 0.52 +0.6
38,354 - HMPREF1058_RS00600 0.53 -1.4
38,357 + HMPREF1058_RS00600 0.53 -0.6
38,358 - -1.0
38,358 - HMPREF1058_RS00600 0.53 -0.6
38,358 - HMPREF1058_RS00600 0.53 +0.4
38,358 - HMPREF1058_RS00600 0.53 -0.0
38,358 - HMPREF1058_RS00600 0.53 -1.0
38,358 - HMPREF1058_RS00600 0.53 -0.2
38,435 + HMPREF1058_RS00600 0.62 -2.0
38,514 - HMPREF1058_RS00600 0.70 -2.8
38,514 - HMPREF1058_RS00600 0.70 +0.3
38,518 - HMPREF1058_RS00600 0.71 -0.7
38,616 + HMPREF1058_RS00600 0.82 -0.5
38,618 + HMPREF1058_RS00600 0.82 -0.6
38,619 - HMPREF1058_RS00600 0.82 -2.2
38,728 - -1.1
38,893 + -1.3
38,960 + -0.7
39,054 + HMPREF1058_RS00595 0.16 -0.0
39,085 - HMPREF1058_RS00595 0.22 -2.2
39,096 + HMPREF1058_RS00595 0.24 -1.4
39,124 + HMPREF1058_RS00595 0.28 -0.4
39,128 + HMPREF1058_RS00595 0.29 -1.0
39,129 - HMPREF1058_RS00595 0.29 -1.8
39,326 + HMPREF1058_RS00595 0.62 -2.8
39,327 - HMPREF1058_RS00595 0.62 -3.4
39,548 - +1.6
39,548 - -0.1
39,556 + -0.2
39,557 - +0.2
39,638 + -0.8
39,639 - -0.3
39,639 - -1.1
39,705 + +0.6

Or see this region's nucleotide sequence