Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00145 and HMPREF1058_RS00140 overlap by 1 nucleotides HMPREF1058_RS00140 and HMPREF1058_RS00135 are separated by 708 nucleotides
HMPREF1058_RS00145: HMPREF1058_RS00145 - ROK family protein, at 46,666 to 47,637
_RS00145
HMPREF1058_RS00140: HMPREF1058_RS00140 - L-rhamnose mutarotase, at 47,637 to 48,026
_RS00140
HMPREF1058_RS00135: HMPREF1058_RS00135 - isoaspartyl peptidase/L-asparaginase, at 48,735 to 49,721
_RS00135
Position (kb) 47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 47.395 kb on - strand, within HMPREF1058_RS00145 at 47.660 kb on + strand at 47.712 kb on - strand, within HMPREF1058_RS00140 at 47.745 kb on - strand, within HMPREF1058_RS00140 at 47.793 kb on - strand, within HMPREF1058_RS00140 at 47.826 kb on + strand at 47.826 kb on + strand, within HMPREF1058_RS00140 at 47.850 kb on - strand, within HMPREF1058_RS00140 at 47.907 kb on - strand, within HMPREF1058_RS00140 at 47.937 kb on + strand, within HMPREF1058_RS00140 at 47.937 kb on + strand, within HMPREF1058_RS00140 at 47.938 kb on - strand, within HMPREF1058_RS00140 at 47.938 kb on - strand, within HMPREF1058_RS00140 at 47.938 kb on - strand, within HMPREF1058_RS00140 at 47.939 kb on + strand, within HMPREF1058_RS00140 at 47.939 kb on + strand, within HMPREF1058_RS00140 at 47.939 kb on + strand, within HMPREF1058_RS00140 at 47.939 kb on + strand, within HMPREF1058_RS00140 at 47.940 kb on - strand, within HMPREF1058_RS00140 at 47.940 kb on - strand, within HMPREF1058_RS00140 at 48.012 kb on + strand at 48.016 kb on + strand at 48.018 kb on + strand at 48.018 kb on + strand at 48.019 kb on - strand at 48.024 kb on + strand at 48.036 kb on + strand at 48.037 kb on - strand at 48.047 kb on - strand at 48.047 kb on - strand at 48.058 kb on - strand at 48.085 kb on + strand at 48.086 kb on - strand at 48.086 kb on - strand at 48.097 kb on - strand at 48.098 kb on + strand at 48.119 kb on - strand at 48.262 kb on - strand at 48.266 kb on - strand at 48.277 kb on - strand at 48.303 kb on - strand at 48.449 kb on - strand at 48.467 kb on + strand at 48.467 kb on + strand at 48.467 kb on + strand at 48.467 kb on + strand at 48.467 kb on + strand at 48.468 kb on - strand at 48.468 kb on - strand at 48.468 kb on - strand at 48.468 kb on - strand at 48.468 kb on - strand at 48.524 kb on + strand at 48.601 kb on - strand at 48.656 kb on + strand at 48.656 kb on + strand at 48.656 kb on + strand at 48.668 kb on + strand at 48.699 kb on - strand at 48.711 kb on + strand at 48.712 kb on - strand at 48.728 kb on + strand at 48.728 kb on + strand at 48.734 kb on + strand at 48.745 kb on + strand at 48.766 kb on + strand at 48.804 kb on + strand at 48.877 kb on - strand, within HMPREF1058_RS00135 at 48.877 kb on - strand, within HMPREF1058_RS00135 at 48.918 kb on - strand, within HMPREF1058_RS00135 at 48.918 kb on - strand, within HMPREF1058_RS00135 at 48.920 kb on - strand, within HMPREF1058_RS00135 at 48.980 kb on + strand, within HMPREF1058_RS00135
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 47,395 - HMPREF1058_RS00145 0.75 -1.4 47,660 + -0.3 47,712 - HMPREF1058_RS00140 0.19 -0.2 47,745 - HMPREF1058_RS00140 0.28 -0.9 47,793 - HMPREF1058_RS00140 0.40 +0.8 47,826 + +1.2 47,826 + HMPREF1058_RS00140 0.48 -0.7 47,850 - HMPREF1058_RS00140 0.55 +0.1 47,907 - HMPREF1058_RS00140 0.69 -0.1 47,937 + HMPREF1058_RS00140 0.77 -0.2 47,937 + HMPREF1058_RS00140 0.77 +0.4 47,938 - HMPREF1058_RS00140 0.77 -1.6 47,938 - HMPREF1058_RS00140 0.77 -0.5 47,938 - HMPREF1058_RS00140 0.77 -1.9 47,939 + HMPREF1058_RS00140 0.77 -0.2 47,939 + HMPREF1058_RS00140 0.77 -1.3 47,939 + HMPREF1058_RS00140 0.77 -1.3 47,939 + HMPREF1058_RS00140 0.77 -0.4 47,940 - HMPREF1058_RS00140 0.78 -3.0 47,940 - HMPREF1058_RS00140 0.78 -1.5 48,012 + -0.7 48,016 + +1.2 48,018 + -0.1 48,018 + -0.5 48,019 - -1.8 48,024 + -1.3 48,036 + -0.9 48,037 - -0.1 48,047 - -0.6 48,047 - -1.8 48,058 - -0.6 48,085 + +0.2 48,086 - -0.6 48,086 - -0.1 48,097 - -0.4 48,098 + -0.1 48,119 - +0.4 48,262 - +1.2 48,266 - -0.1 48,277 - -0.3 48,303 - -0.3 48,449 - +0.2 48,467 + -0.2 48,467 + +0.1 48,467 + -0.7 48,467 + -0.5 48,467 + -0.3 48,468 - +0.2 48,468 - +0.0 48,468 - -0.3 48,468 - +0.2 48,468 - +0.9 48,524 + +1.8 48,601 - +0.1 48,656 + +0.2 48,656 + +0.4 48,656 + +0.3 48,668 + +1.1 48,699 - +0.5 48,711 + -0.7 48,712 - -0.7 48,728 + -1.8 48,728 + +1.7 48,734 + -0.9 48,745 + +0.2 48,766 + -0.2 48,804 + +0.0 48,877 - HMPREF1058_RS00135 0.14 -0.5 48,877 - HMPREF1058_RS00135 0.14 -0.3 48,918 - HMPREF1058_RS00135 0.19 +1.2 48,918 - HMPREF1058_RS00135 0.19 +0.1 48,920 - HMPREF1058_RS00135 0.19 -1.3 48,980 + HMPREF1058_RS00135 0.25 +0.2
Or see this region's nucleotide sequence