Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17065

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17070 and HMPREF1058_RS17065 are separated by 53 nucleotidesHMPREF1058_RS17065 and HMPREF1058_RS17060 are separated by 6 nucleotidesHMPREF1058_RS17060 and HMPREF1058_RS17055 are separated by 4 nucleotides HMPREF1058_RS17070: HMPREF1058_RS17070 - ribokinase, at 526,092 to 526,988 _RS17070 HMPREF1058_RS17065: HMPREF1058_RS17065 - sugar MFS transporter, at 527,042 to 528,241 _RS17065 HMPREF1058_RS17060: HMPREF1058_RS17060 - HAD family hydrolase, at 528,248 to 528,970 _RS17060 HMPREF1058_RS17055: HMPREF1058_RS17055 - flippase-like domain-containing protein, at 528,975 to 529,976 _RS17055 Position (kb) 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2 3at 526.083 kb on + strandat 526.087 kb on + strandat 526.088 kb on - strandat 526.122 kb on - strandat 526.127 kb on - strandat 526.127 kb on - strandat 526.158 kb on + strandat 526.159 kb on - strandat 526.159 kb on - strandat 526.160 kb on + strandat 526.160 kb on + strandat 526.208 kb on - strand, within HMPREF1058_RS17070at 526.304 kb on + strand, within HMPREF1058_RS17070at 526.304 kb on + strand, within HMPREF1058_RS17070at 526.305 kb on - strand, within HMPREF1058_RS17070at 526.326 kb on + strand, within HMPREF1058_RS17070at 526.337 kb on + strand, within HMPREF1058_RS17070at 526.338 kb on - strand, within HMPREF1058_RS17070at 526.341 kb on + strand, within HMPREF1058_RS17070at 526.341 kb on + strand, within HMPREF1058_RS17070at 526.341 kb on + strand, within HMPREF1058_RS17070at 526.420 kb on + strand, within HMPREF1058_RS17070at 526.421 kb on - strand, within HMPREF1058_RS17070at 526.502 kb on + strand, within HMPREF1058_RS17070at 526.502 kb on + strand, within HMPREF1058_RS17070at 526.504 kb on + strand, within HMPREF1058_RS17070at 526.504 kb on + strandat 526.504 kb on + strand, within HMPREF1058_RS17070at 526.505 kb on - strand, within HMPREF1058_RS17070at 526.514 kb on - strand, within HMPREF1058_RS17070at 526.527 kb on + strand, within HMPREF1058_RS17070at 526.531 kb on + strand, within HMPREF1058_RS17070at 526.596 kb on + strand, within HMPREF1058_RS17070at 526.672 kb on + strand, within HMPREF1058_RS17070at 526.679 kb on - strand, within HMPREF1058_RS17070at 526.702 kb on + strand, within HMPREF1058_RS17070at 526.710 kb on - strand, within HMPREF1058_RS17070at 526.749 kb on - strand, within HMPREF1058_RS17070at 526.786 kb on + strand, within HMPREF1058_RS17070at 526.787 kb on - strand, within HMPREF1058_RS17070at 526.790 kb on - strand, within HMPREF1058_RS17070at 526.790 kb on - strand, within HMPREF1058_RS17070at 526.812 kb on - strand, within HMPREF1058_RS17070at 526.815 kb on + strand, within HMPREF1058_RS17070at 526.815 kb on + strand, within HMPREF1058_RS17070at 526.816 kb on - strand, within HMPREF1058_RS17070at 526.816 kb on - strand, within HMPREF1058_RS17070at 526.831 kb on + strand, within HMPREF1058_RS17070at 526.833 kb on + strand, within HMPREF1058_RS17070at 526.833 kb on + strand, within HMPREF1058_RS17070at 526.833 kb on + strand, within HMPREF1058_RS17070at 526.834 kb on - strand, within HMPREF1058_RS17070at 526.834 kb on - strand, within HMPREF1058_RS17070at 526.834 kb on - strand, within HMPREF1058_RS17070at 526.857 kb on + strand, within HMPREF1058_RS17070at 526.887 kb on - strand, within HMPREF1058_RS17070at 526.942 kb on + strandat 526.942 kb on + strandat 526.943 kb on - strandat 527.064 kb on + strandat 527.073 kb on + strandat 527.086 kb on + strandat 527.086 kb on + strandat 527.087 kb on - strandat 527.117 kb on + strandat 527.131 kb on + strandat 527.132 kb on - strandat 527.135 kb on - strandat 527.145 kb on + strandat 527.281 kb on - strand, within HMPREF1058_RS17065at 527.281 kb on - strand, within HMPREF1058_RS17065at 527.316 kb on - strand, within HMPREF1058_RS17065at 527.366 kb on + strand, within HMPREF1058_RS17065at 527.502 kb on + strand, within HMPREF1058_RS17065at 527.502 kb on + strand, within HMPREF1058_RS17065at 527.503 kb on - strand, within HMPREF1058_RS17065at 527.509 kb on + strand, within HMPREF1058_RS17065at 527.518 kb on + strand, within HMPREF1058_RS17065at 527.525 kb on - strand, within HMPREF1058_RS17065at 527.545 kb on - strand, within HMPREF1058_RS17065at 527.571 kb on - strand, within HMPREF1058_RS17065at 527.576 kb on + strand, within HMPREF1058_RS17065at 527.684 kb on + strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.705 kb on - strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.706 kb on + strand, within HMPREF1058_RS17065at 527.707 kb on - strand, within HMPREF1058_RS17065at 527.707 kb on - strand, within HMPREF1058_RS17065at 527.720 kb on - strand, within HMPREF1058_RS17065at 527.783 kb on + strand, within HMPREF1058_RS17065at 527.851 kb on + strand, within HMPREF1058_RS17065at 527.851 kb on + strand, within HMPREF1058_RS17065at 527.852 kb on - strand, within HMPREF1058_RS17065at 528.013 kb on - strand, within HMPREF1058_RS17065at 528.013 kb on - strand, within HMPREF1058_RS17065at 528.047 kb on + strand, within HMPREF1058_RS17065at 528.048 kb on - strand, within HMPREF1058_RS17065at 528.055 kb on - strand, within HMPREF1058_RS17065at 528.104 kb on - strand, within HMPREF1058_RS17065at 528.135 kb on - strandat 528.145 kb on + strandat 528.185 kb on + strandat 528.200 kb on + strandat 528.201 kb on - strandat 528.287 kb on + strandat 528.359 kb on + strand, within HMPREF1058_RS17060at 528.360 kb on - strand, within HMPREF1058_RS17060at 528.454 kb on - strand, within HMPREF1058_RS17060at 528.454 kb on - strand, within HMPREF1058_RS17060at 528.454 kb on - strand, within HMPREF1058_RS17060at 528.548 kb on + strand, within HMPREF1058_RS17060at 528.549 kb on - strand, within HMPREF1058_RS17060at 528.583 kb on + strand, within HMPREF1058_RS17060at 528.585 kb on + strand, within HMPREF1058_RS17060at 528.630 kb on - strand, within HMPREF1058_RS17060at 528.630 kb on - strand, within HMPREF1058_RS17060at 528.630 kb on - strand, within HMPREF1058_RS17060at 528.630 kb on - strand, within HMPREF1058_RS17060at 528.632 kb on - strand, within HMPREF1058_RS17060at 528.642 kb on + strand, within HMPREF1058_RS17060at 528.773 kb on - strand, within HMPREF1058_RS17060at 528.799 kb on + strand, within HMPREF1058_RS17060at 528.825 kb on + strand, within HMPREF1058_RS17060at 528.826 kb on - strand, within HMPREF1058_RS17060at 528.873 kb on + strand, within HMPREF1058_RS17060at 528.874 kb on - strand, within HMPREF1058_RS17060at 528.877 kb on + strand, within HMPREF1058_RS17060at 528.877 kb on + strand, within HMPREF1058_RS17060at 528.878 kb on - strand, within HMPREF1058_RS17060at 528.917 kb on + strandat 528.918 kb on - strandat 528.931 kb on - strandat 528.939 kb on - strandat 528.964 kb on + strandat 528.977 kb on - strandat 528.981 kb on - strandat 528.992 kb on + strandat 529.027 kb on - strandat 529.194 kb on + strand, within HMPREF1058_RS17055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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526,083 + +0.7
526,087 + -0.5
526,088 - -0.4
526,122 - +0.3
526,127 - -0.2
526,127 - +0.4
526,158 + +0.7
526,159 - +0.4
526,159 - +0.9
526,160 + -0.2
526,160 + +0.4
526,208 - HMPREF1058_RS17070 0.13 -0.5
526,304 + HMPREF1058_RS17070 0.24 +0.0
526,304 + HMPREF1058_RS17070 0.24 +0.5
526,305 - HMPREF1058_RS17070 0.24 -0.1
526,326 + HMPREF1058_RS17070 0.26 +0.4
526,337 + HMPREF1058_RS17070 0.27 +1.2
526,338 - HMPREF1058_RS17070 0.27 +0.8
526,341 + HMPREF1058_RS17070 0.28 -1.3
526,341 + HMPREF1058_RS17070 0.28 +1.2
526,341 + HMPREF1058_RS17070 0.28 -0.1
526,420 + HMPREF1058_RS17070 0.37 +0.1
526,421 - HMPREF1058_RS17070 0.37 +2.9
526,502 + HMPREF1058_RS17070 0.46 +0.1
526,502 + HMPREF1058_RS17070 0.46 +2.7
526,504 + HMPREF1058_RS17070 0.46 +0.4
526,504 + -1.0
526,504 + HMPREF1058_RS17070 0.46 +0.7
526,505 - HMPREF1058_RS17070 0.46 -0.1
526,514 - HMPREF1058_RS17070 0.47 +0.8
526,527 + HMPREF1058_RS17070 0.48 +1.1
526,531 + HMPREF1058_RS17070 0.49 +0.5
526,596 + HMPREF1058_RS17070 0.56 -0.1
526,672 + HMPREF1058_RS17070 0.65 -0.0
526,679 - HMPREF1058_RS17070 0.65 +0.3
526,702 + HMPREF1058_RS17070 0.68 +1.8
526,710 - HMPREF1058_RS17070 0.69 -1.5
526,749 - HMPREF1058_RS17070 0.73 +0.3
526,786 + HMPREF1058_RS17070 0.77 -0.2
526,787 - HMPREF1058_RS17070 0.77 +0.0
526,790 - HMPREF1058_RS17070 0.78 +0.6
526,790 - HMPREF1058_RS17070 0.78 -0.3
526,812 - HMPREF1058_RS17070 0.80 -1.0
526,815 + HMPREF1058_RS17070 0.81 +0.9
526,815 + HMPREF1058_RS17070 0.81 +0.6
526,816 - HMPREF1058_RS17070 0.81 +0.8
526,816 - HMPREF1058_RS17070 0.81 +0.2
526,831 + HMPREF1058_RS17070 0.82 -0.1
526,833 + HMPREF1058_RS17070 0.83 -0.2
526,833 + HMPREF1058_RS17070 0.83 -0.0
526,833 + HMPREF1058_RS17070 0.83 -0.2
526,834 - HMPREF1058_RS17070 0.83 +0.2
526,834 - HMPREF1058_RS17070 0.83 +0.1
526,834 - HMPREF1058_RS17070 0.83 +0.0
526,857 + HMPREF1058_RS17070 0.85 -0.2
526,887 - HMPREF1058_RS17070 0.89 -0.1
526,942 + -0.8
526,942 + +1.2
526,943 - -1.0
527,064 + +0.4
527,073 + +0.7
527,086 + +0.3
527,086 + +1.5
527,087 - +0.5
527,117 + -0.6
527,131 + -1.2
527,132 - +0.3
527,135 - +2.6
527,145 + -1.1
527,281 - HMPREF1058_RS17065 0.20 +0.2
527,281 - HMPREF1058_RS17065 0.20 -0.1
527,316 - HMPREF1058_RS17065 0.23 +0.3
527,366 + HMPREF1058_RS17065 0.27 -0.2
527,502 + HMPREF1058_RS17065 0.38 +0.9
527,502 + HMPREF1058_RS17065 0.38 +0.6
527,503 - HMPREF1058_RS17065 0.38 -0.1
527,509 + HMPREF1058_RS17065 0.39 +0.5
527,518 + HMPREF1058_RS17065 0.40 +1.2
527,525 - HMPREF1058_RS17065 0.40 -0.1
527,545 - HMPREF1058_RS17065 0.42 -1.1
527,571 - HMPREF1058_RS17065 0.44 -1.7
527,576 + HMPREF1058_RS17065 0.45 +0.4
527,684 + HMPREF1058_RS17065 0.54 +0.5
527,705 - HMPREF1058_RS17065 0.55 -0.5
527,705 - HMPREF1058_RS17065 0.55 +0.9
527,705 - HMPREF1058_RS17065 0.55 -0.5
527,705 - HMPREF1058_RS17065 0.55 -0.5
527,706 + HMPREF1058_RS17065 0.55 +0.3
527,706 + HMPREF1058_RS17065 0.55 +2.1
527,706 + HMPREF1058_RS17065 0.55 +0.5
527,706 + HMPREF1058_RS17065 0.55 +1.7
527,707 - HMPREF1058_RS17065 0.55 +0.7
527,707 - HMPREF1058_RS17065 0.55 +1.2
527,720 - HMPREF1058_RS17065 0.56 -2.1
527,783 + HMPREF1058_RS17065 0.62 -1.5
527,851 + HMPREF1058_RS17065 0.67 -0.1
527,851 + HMPREF1058_RS17065 0.67 +2.2
527,852 - HMPREF1058_RS17065 0.68 +0.4
528,013 - HMPREF1058_RS17065 0.81 +0.3
528,013 - HMPREF1058_RS17065 0.81 -0.1
528,047 + HMPREF1058_RS17065 0.84 -0.3
528,048 - HMPREF1058_RS17065 0.84 -1.1
528,055 - HMPREF1058_RS17065 0.84 +0.1
528,104 - HMPREF1058_RS17065 0.89 -0.8
528,135 - +0.9
528,145 + -0.6
528,185 + +0.4
528,200 + +0.6
528,201 - -0.1
528,287 + +0.5
528,359 + HMPREF1058_RS17060 0.15 -1.3
528,360 - HMPREF1058_RS17060 0.15 +1.5
528,454 - HMPREF1058_RS17060 0.28 -0.8
528,454 - HMPREF1058_RS17060 0.28 +0.6
528,454 - HMPREF1058_RS17060 0.28 -0.9
528,548 + HMPREF1058_RS17060 0.41 -0.1
528,549 - HMPREF1058_RS17060 0.42 -1.2
528,583 + HMPREF1058_RS17060 0.46 -1.4
528,585 + HMPREF1058_RS17060 0.47 -2.0
528,630 - HMPREF1058_RS17060 0.53 +1.4
528,630 - HMPREF1058_RS17060 0.53 -0.1
528,630 - HMPREF1058_RS17060 0.53 -0.7
528,630 - HMPREF1058_RS17060 0.53 +0.3
528,632 - HMPREF1058_RS17060 0.53 -1.2
528,642 + HMPREF1058_RS17060 0.54 +0.4
528,773 - HMPREF1058_RS17060 0.73 -0.9
528,799 + HMPREF1058_RS17060 0.76 -1.8
528,825 + HMPREF1058_RS17060 0.80 -0.6
528,826 - HMPREF1058_RS17060 0.80 +0.6
528,873 + HMPREF1058_RS17060 0.86 -0.9
528,874 - HMPREF1058_RS17060 0.87 +0.4
528,877 + HMPREF1058_RS17060 0.87 -0.6
528,877 + HMPREF1058_RS17060 0.87 -2.2
528,878 - HMPREF1058_RS17060 0.87 -0.8
528,917 + -0.3
528,918 - -0.5
528,931 - +0.9
528,939 - +0.5
528,964 + +0.9
528,977 - +2.0
528,981 - -0.7
528,992 + -0.2
529,027 - +1.3
529,194 + HMPREF1058_RS17055 0.22 -1.5

Or see this region's nucleotide sequence