Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS13270 and HMPREF1058_RS13265 are separated by 148 nucleotides HMPREF1058_RS13265 and HMPREF1058_RS13260 are separated by 486 nucleotides
HMPREF1058_RS13270: HMPREF1058_RS13270 - GTP-binding protein, at 1,541,031 to 1,542,281
_RS13270
HMPREF1058_RS13265: HMPREF1058_RS13265 - alpha-L-fucosidase, at 1,542,430 to 1,543,755
_RS13265
HMPREF1058_RS13260: HMPREF1058_RS13260 - integrase catalytic domain-containing protein, at 1,544,242 to 1,545,597
_RS13260
Position (kb)
1542
1543
1544 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1541.563 kb on + strand, within HMPREF1058_RS13270 at 1541.568 kb on + strand, within HMPREF1058_RS13270 at 1541.569 kb on - strand at 1541.569 kb on - strand, within HMPREF1058_RS13270 at 1541.604 kb on + strand, within HMPREF1058_RS13270 at 1541.694 kb on + strand, within HMPREF1058_RS13270 at 1541.694 kb on + strand, within HMPREF1058_RS13270 at 1541.879 kb on + strand, within HMPREF1058_RS13270 at 1541.879 kb on + strand, within HMPREF1058_RS13270 at 1541.933 kb on - strand, within HMPREF1058_RS13270 at 1541.955 kb on - strand, within HMPREF1058_RS13270 at 1541.957 kb on + strand, within HMPREF1058_RS13270 at 1541.958 kb on - strand, within HMPREF1058_RS13270 at 1541.993 kb on + strand, within HMPREF1058_RS13270 at 1542.003 kb on - strand, within HMPREF1058_RS13270 at 1542.064 kb on - strand, within HMPREF1058_RS13270 at 1542.081 kb on - strand, within HMPREF1058_RS13270 at 1542.119 kb on + strand, within HMPREF1058_RS13270 at 1542.120 kb on - strand, within HMPREF1058_RS13270 at 1542.134 kb on + strand, within HMPREF1058_RS13270 at 1542.153 kb on + strand, within HMPREF1058_RS13270 at 1542.197 kb on + strand at 1542.233 kb on + strand at 1542.248 kb on - strand at 1542.249 kb on + strand at 1542.249 kb on + strand at 1542.296 kb on + strand at 1542.297 kb on - strand at 1542.314 kb on + strand at 1542.384 kb on - strand at 1542.394 kb on + strand at 1542.420 kb on + strand at 1542.573 kb on + strand, within HMPREF1058_RS13265 at 1542.584 kb on + strand, within HMPREF1058_RS13265 at 1542.604 kb on + strand, within HMPREF1058_RS13265 at 1542.604 kb on + strand, within HMPREF1058_RS13265 at 1542.634 kb on - strand, within HMPREF1058_RS13265 at 1542.634 kb on - strand, within HMPREF1058_RS13265 at 1542.749 kb on - strand, within HMPREF1058_RS13265 at 1542.749 kb on - strand, within HMPREF1058_RS13265 at 1542.749 kb on - strand, within HMPREF1058_RS13265 at 1542.749 kb on - strand, within HMPREF1058_RS13265 at 1542.749 kb on - strand, within HMPREF1058_RS13265 at 1542.750 kb on + strand, within HMPREF1058_RS13265 at 1542.750 kb on + strand, within HMPREF1058_RS13265 at 1542.751 kb on - strand, within HMPREF1058_RS13265 at 1542.751 kb on - strand, within HMPREF1058_RS13265 at 1542.751 kb on - strand, within HMPREF1058_RS13265 at 1542.756 kb on + strand, within HMPREF1058_RS13265 at 1542.756 kb on + strand, within HMPREF1058_RS13265 at 1542.822 kb on - strand, within HMPREF1058_RS13265 at 1542.822 kb on - strand, within HMPREF1058_RS13265 at 1542.848 kb on + strand, within HMPREF1058_RS13265 at 1542.848 kb on + strand, within HMPREF1058_RS13265 at 1542.849 kb on - strand, within HMPREF1058_RS13265 at 1543.089 kb on - strand, within HMPREF1058_RS13265 at 1543.121 kb on - strand, within HMPREF1058_RS13265 at 1543.158 kb on - strand, within HMPREF1058_RS13265 at 1543.158 kb on - strand, within HMPREF1058_RS13265 at 1543.161 kb on + strand, within HMPREF1058_RS13265 at 1543.263 kb on - strand, within HMPREF1058_RS13265 at 1543.356 kb on - strand, within HMPREF1058_RS13265 at 1543.360 kb on + strand, within HMPREF1058_RS13265 at 1543.360 kb on + strand, within HMPREF1058_RS13265 at 1543.361 kb on - strand, within HMPREF1058_RS13265 at 1543.361 kb on - strand, within HMPREF1058_RS13265 at 1543.437 kb on + strand, within HMPREF1058_RS13265 at 1543.438 kb on - strand, within HMPREF1058_RS13265 at 1543.445 kb on + strand, within HMPREF1058_RS13265 at 1543.445 kb on + strand, within HMPREF1058_RS13265 at 1543.530 kb on + strand, within HMPREF1058_RS13265 at 1543.531 kb on - strand, within HMPREF1058_RS13265 at 1543.575 kb on + strand, within HMPREF1058_RS13265 at 1543.575 kb on + strand, within HMPREF1058_RS13265 at 1543.575 kb on + strand, within HMPREF1058_RS13265 at 1543.603 kb on + strand at 1543.603 kb on + strand, within HMPREF1058_RS13265 at 1543.603 kb on + strand, within HMPREF1058_RS13265 at 1543.604 kb on - strand, within HMPREF1058_RS13265 at 1543.604 kb on - strand, within HMPREF1058_RS13265 at 1543.607 kb on + strand, within HMPREF1058_RS13265 at 1543.607 kb on + strand, within HMPREF1058_RS13265 at 1543.625 kb on + strand at 1543.688 kb on + strand at 1543.689 kb on - strand at 1543.692 kb on + strand at 1543.722 kb on - strand at 1543.726 kb on + strand at 1543.726 kb on + strand at 1543.727 kb on - strand at 1543.727 kb on - strand at 1543.754 kb on - strand at 1543.827 kb on + strand at 1543.859 kb on - strand at 1543.864 kb on - strand at 1543.864 kb on - strand at 1543.867 kb on + strand at 1543.868 kb on - strand at 1544.047 kb on - strand at 1544.053 kb on + strand at 1544.053 kb on + strand at 1544.129 kb on - strand at 1544.158 kb on + strand at 1544.158 kb on + strand at 1544.161 kb on + strand at 1544.170 kb on + strand at 1544.214 kb on + strand at 1544.273 kb on - strand at 1544.294 kb on + strand at 1544.352 kb on + strand at 1544.353 kb on - strand at 1544.403 kb on + strand, within HMPREF1058_RS13260 at 1544.403 kb on + strand, within HMPREF1058_RS13260 at 1544.404 kb on - strand, within HMPREF1058_RS13260 at 1544.404 kb on - strand, within HMPREF1058_RS13260 at 1544.412 kb on + strand, within HMPREF1058_RS13260 at 1544.520 kb on - strand, within HMPREF1058_RS13260 at 1544.682 kb on + strand, within HMPREF1058_RS13260 at 1544.682 kb on + strand, within HMPREF1058_RS13260 at 1544.683 kb on - strand, within HMPREF1058_RS13260 at 1544.716 kb on + strand, within HMPREF1058_RS13260
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 1,541,563 + HMPREF1058_RS13270 0.43 +0.4 1,541,568 + HMPREF1058_RS13270 0.43 +2.0 1,541,569 - -0.1 1,541,569 - HMPREF1058_RS13270 0.43 +0.1 1,541,604 + HMPREF1058_RS13270 0.46 -0.3 1,541,694 + HMPREF1058_RS13270 0.53 +0.3 1,541,694 + HMPREF1058_RS13270 0.53 +0.5 1,541,879 + HMPREF1058_RS13270 0.68 +0.2 1,541,879 + HMPREF1058_RS13270 0.68 -0.4 1,541,933 - HMPREF1058_RS13270 0.72 +0.0 1,541,955 - HMPREF1058_RS13270 0.74 -0.5 1,541,957 + HMPREF1058_RS13270 0.74 +0.0 1,541,958 - HMPREF1058_RS13270 0.74 -0.2 1,541,993 + HMPREF1058_RS13270 0.77 -0.7 1,542,003 - HMPREF1058_RS13270 0.78 -0.2 1,542,064 - HMPREF1058_RS13270 0.83 +1.2 1,542,081 - HMPREF1058_RS13270 0.84 -0.3 1,542,119 + HMPREF1058_RS13270 0.87 -0.3 1,542,120 - HMPREF1058_RS13270 0.87 -0.3 1,542,134 + HMPREF1058_RS13270 0.88 -0.8 1,542,153 + HMPREF1058_RS13270 0.90 +1.0 1,542,197 + +1.2 1,542,233 + -0.6 1,542,248 - +1.6 1,542,249 + +0.6 1,542,249 + -0.6 1,542,296 + +0.0 1,542,297 - -0.4 1,542,314 + +1.4 1,542,384 - -0.7 1,542,394 + +0.9 1,542,420 + +0.6 1,542,573 + HMPREF1058_RS13265 0.11 +1.0 1,542,584 + HMPREF1058_RS13265 0.12 -0.9 1,542,604 + HMPREF1058_RS13265 0.13 -0.2 1,542,604 + HMPREF1058_RS13265 0.13 +0.3 1,542,634 - HMPREF1058_RS13265 0.15 -0.1 1,542,634 - HMPREF1058_RS13265 0.15 +0.4 1,542,749 - HMPREF1058_RS13265 0.24 +0.0 1,542,749 - HMPREF1058_RS13265 0.24 +0.4 1,542,749 - HMPREF1058_RS13265 0.24 -0.3 1,542,749 - HMPREF1058_RS13265 0.24 +0.0 1,542,749 - HMPREF1058_RS13265 0.24 +0.2 1,542,750 + HMPREF1058_RS13265 0.24 -0.2 1,542,750 + HMPREF1058_RS13265 0.24 -0.0 1,542,751 - HMPREF1058_RS13265 0.24 -0.4 1,542,751 - HMPREF1058_RS13265 0.24 -0.8 1,542,751 - HMPREF1058_RS13265 0.24 -0.5 1,542,756 + HMPREF1058_RS13265 0.25 -0.2 1,542,756 + HMPREF1058_RS13265 0.25 -0.8 1,542,822 - HMPREF1058_RS13265 0.30 +0.2 1,542,822 - HMPREF1058_RS13265 0.30 -0.3 1,542,848 + HMPREF1058_RS13265 0.32 +0.1 1,542,848 + HMPREF1058_RS13265 0.32 +1.0 1,542,849 - HMPREF1058_RS13265 0.32 +0.0 1,543,089 - HMPREF1058_RS13265 0.50 +0.9 1,543,121 - HMPREF1058_RS13265 0.52 +2.2 1,543,158 - HMPREF1058_RS13265 0.55 +0.3 1,543,158 - HMPREF1058_RS13265 0.55 -0.3 1,543,161 + HMPREF1058_RS13265 0.55 -0.1 1,543,263 - HMPREF1058_RS13265 0.63 +2.3 1,543,356 - HMPREF1058_RS13265 0.70 +0.1 1,543,360 + HMPREF1058_RS13265 0.70 +0.4 1,543,360 + HMPREF1058_RS13265 0.70 -1.4 1,543,361 - HMPREF1058_RS13265 0.70 -0.3 1,543,361 - HMPREF1058_RS13265 0.70 +0.4 1,543,437 + HMPREF1058_RS13265 0.76 -0.4 1,543,438 - HMPREF1058_RS13265 0.76 -0.2 1,543,445 + HMPREF1058_RS13265 0.77 -0.3 1,543,445 + HMPREF1058_RS13265 0.77 +1.6 1,543,530 + HMPREF1058_RS13265 0.83 +0.3 1,543,531 - HMPREF1058_RS13265 0.83 -1.5 1,543,575 + HMPREF1058_RS13265 0.86 -0.4 1,543,575 + HMPREF1058_RS13265 0.86 -1.5 1,543,575 + HMPREF1058_RS13265 0.86 -0.4 1,543,603 + +0.8 1,543,603 + HMPREF1058_RS13265 0.88 +0.4 1,543,603 + HMPREF1058_RS13265 0.88 -0.5 1,543,604 - HMPREF1058_RS13265 0.89 +1.4 1,543,604 - HMPREF1058_RS13265 0.89 +0.2 1,543,607 + HMPREF1058_RS13265 0.89 -1.0 1,543,607 + HMPREF1058_RS13265 0.89 -0.1 1,543,625 + -2.1 1,543,688 + -1.5 1,543,689 - -0.4 1,543,692 + +0.3 1,543,722 - -0.2 1,543,726 + +0.2 1,543,726 + -0.1 1,543,727 - +0.1 1,543,727 - +0.2 1,543,754 - +1.0 1,543,827 + -0.4 1,543,859 - -1.0 1,543,864 - -0.9 1,543,864 - +1.0 1,543,867 + -0.1 1,543,868 - +0.4 1,544,047 - -1.3 1,544,053 + -0.4 1,544,053 + -0.9 1,544,129 - -0.2 1,544,158 + -0.9 1,544,158 + +0.5 1,544,161 + +0.8 1,544,170 + -1.1 1,544,214 + -0.6 1,544,273 - -0.8 1,544,294 + -1.1 1,544,352 + +1.3 1,544,353 - +0.8 1,544,403 + HMPREF1058_RS13260 0.12 -0.9 1,544,403 + HMPREF1058_RS13260 0.12 +2.4 1,544,404 - HMPREF1058_RS13260 0.12 -1.7 1,544,404 - HMPREF1058_RS13260 0.12 -0.4 1,544,412 + HMPREF1058_RS13260 0.13 +0.1 1,544,520 - HMPREF1058_RS13260 0.21 -0.2 1,544,682 + HMPREF1058_RS13260 0.32 +0.7 1,544,682 + HMPREF1058_RS13260 0.32 +0.1 1,544,683 - HMPREF1058_RS13260 0.33 -0.0 1,544,716 + HMPREF1058_RS13260 0.35 +0.5
Or see this region's nucleotide sequence