Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13265

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS13270 and HMPREF1058_RS13265 are separated by 148 nucleotidesHMPREF1058_RS13265 and HMPREF1058_RS13260 are separated by 486 nucleotides HMPREF1058_RS13270: HMPREF1058_RS13270 - GTP-binding protein, at 1,541,031 to 1,542,281 _RS13270 HMPREF1058_RS13265: HMPREF1058_RS13265 - alpha-L-fucosidase, at 1,542,430 to 1,543,755 _RS13265 HMPREF1058_RS13260: HMPREF1058_RS13260 - integrase catalytic domain-containing protein, at 1,544,242 to 1,545,597 _RS13260 Position (kb) 1542 1543 1544Strain fitness (log2 ratio) -2 -1 0 1 2at 1541.563 kb on + strand, within HMPREF1058_RS13270at 1541.568 kb on + strand, within HMPREF1058_RS13270at 1541.569 kb on - strandat 1541.569 kb on - strand, within HMPREF1058_RS13270at 1541.604 kb on + strand, within HMPREF1058_RS13270at 1541.694 kb on + strand, within HMPREF1058_RS13270at 1541.694 kb on + strand, within HMPREF1058_RS13270at 1541.879 kb on + strand, within HMPREF1058_RS13270at 1541.879 kb on + strand, within HMPREF1058_RS13270at 1541.933 kb on - strand, within HMPREF1058_RS13270at 1541.955 kb on - strand, within HMPREF1058_RS13270at 1541.957 kb on + strand, within HMPREF1058_RS13270at 1541.958 kb on - strand, within HMPREF1058_RS13270at 1541.993 kb on + strand, within HMPREF1058_RS13270at 1542.003 kb on - strand, within HMPREF1058_RS13270at 1542.064 kb on - strand, within HMPREF1058_RS13270at 1542.081 kb on - strand, within HMPREF1058_RS13270at 1542.119 kb on + strand, within HMPREF1058_RS13270at 1542.120 kb on - strand, within HMPREF1058_RS13270at 1542.134 kb on + strand, within HMPREF1058_RS13270at 1542.153 kb on + strand, within HMPREF1058_RS13270at 1542.197 kb on + strandat 1542.233 kb on + strandat 1542.248 kb on - strandat 1542.249 kb on + strandat 1542.249 kb on + strandat 1542.296 kb on + strandat 1542.297 kb on - strandat 1542.314 kb on + strandat 1542.384 kb on - strandat 1542.394 kb on + strandat 1542.420 kb on + strandat 1542.573 kb on + strand, within HMPREF1058_RS13265at 1542.584 kb on + strand, within HMPREF1058_RS13265at 1542.604 kb on + strand, within HMPREF1058_RS13265at 1542.604 kb on + strand, within HMPREF1058_RS13265at 1542.634 kb on - strand, within HMPREF1058_RS13265at 1542.634 kb on - strand, within HMPREF1058_RS13265at 1542.749 kb on - strand, within HMPREF1058_RS13265at 1542.749 kb on - strand, within HMPREF1058_RS13265at 1542.749 kb on - strand, within HMPREF1058_RS13265at 1542.749 kb on - strand, within HMPREF1058_RS13265at 1542.749 kb on - strand, within HMPREF1058_RS13265at 1542.750 kb on + strand, within HMPREF1058_RS13265at 1542.750 kb on + strand, within HMPREF1058_RS13265at 1542.751 kb on - strand, within HMPREF1058_RS13265at 1542.751 kb on - strand, within HMPREF1058_RS13265at 1542.751 kb on - strand, within HMPREF1058_RS13265at 1542.756 kb on + strand, within HMPREF1058_RS13265at 1542.756 kb on + strand, within HMPREF1058_RS13265at 1542.822 kb on - strand, within HMPREF1058_RS13265at 1542.822 kb on - strand, within HMPREF1058_RS13265at 1542.848 kb on + strand, within HMPREF1058_RS13265at 1542.848 kb on + strand, within HMPREF1058_RS13265at 1542.849 kb on - strand, within HMPREF1058_RS13265at 1543.089 kb on - strand, within HMPREF1058_RS13265at 1543.121 kb on - strand, within HMPREF1058_RS13265at 1543.158 kb on - strand, within HMPREF1058_RS13265at 1543.158 kb on - strand, within HMPREF1058_RS13265at 1543.161 kb on + strand, within HMPREF1058_RS13265at 1543.263 kb on - strand, within HMPREF1058_RS13265at 1543.356 kb on - strand, within HMPREF1058_RS13265at 1543.360 kb on + strand, within HMPREF1058_RS13265at 1543.360 kb on + strand, within HMPREF1058_RS13265at 1543.361 kb on - strand, within HMPREF1058_RS13265at 1543.361 kb on - strand, within HMPREF1058_RS13265at 1543.437 kb on + strand, within HMPREF1058_RS13265at 1543.438 kb on - strand, within HMPREF1058_RS13265at 1543.445 kb on + strand, within HMPREF1058_RS13265at 1543.445 kb on + strand, within HMPREF1058_RS13265at 1543.530 kb on + strand, within HMPREF1058_RS13265at 1543.531 kb on - strand, within HMPREF1058_RS13265at 1543.575 kb on + strand, within HMPREF1058_RS13265at 1543.575 kb on + strand, within HMPREF1058_RS13265at 1543.575 kb on + strand, within HMPREF1058_RS13265at 1543.603 kb on + strandat 1543.603 kb on + strand, within HMPREF1058_RS13265at 1543.603 kb on + strand, within HMPREF1058_RS13265at 1543.604 kb on - strand, within HMPREF1058_RS13265at 1543.604 kb on - strand, within HMPREF1058_RS13265at 1543.607 kb on + strand, within HMPREF1058_RS13265at 1543.607 kb on + strand, within HMPREF1058_RS13265at 1543.625 kb on + strandat 1543.688 kb on + strandat 1543.689 kb on - strandat 1543.692 kb on + strandat 1543.722 kb on - strandat 1543.726 kb on + strandat 1543.726 kb on + strandat 1543.727 kb on - strandat 1543.727 kb on - strandat 1543.754 kb on - strandat 1543.827 kb on + strandat 1543.859 kb on - strandat 1543.864 kb on - strandat 1543.864 kb on - strandat 1543.867 kb on + strandat 1543.868 kb on - strandat 1544.047 kb on - strandat 1544.053 kb on + strandat 1544.053 kb on + strandat 1544.129 kb on - strandat 1544.158 kb on + strandat 1544.158 kb on + strandat 1544.161 kb on + strandat 1544.170 kb on + strandat 1544.214 kb on + strandat 1544.273 kb on - strandat 1544.294 kb on + strandat 1544.352 kb on + strandat 1544.353 kb on - strandat 1544.403 kb on + strand, within HMPREF1058_RS13260at 1544.403 kb on + strand, within HMPREF1058_RS13260at 1544.404 kb on - strand, within HMPREF1058_RS13260at 1544.404 kb on - strand, within HMPREF1058_RS13260at 1544.412 kb on + strand, within HMPREF1058_RS13260at 1544.520 kb on - strand, within HMPREF1058_RS13260at 1544.682 kb on + strand, within HMPREF1058_RS13260at 1544.682 kb on + strand, within HMPREF1058_RS13260at 1544.683 kb on - strand, within HMPREF1058_RS13260at 1544.716 kb on + strand, within HMPREF1058_RS13260

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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1,541,563 + HMPREF1058_RS13270 0.43 +0.4
1,541,568 + HMPREF1058_RS13270 0.43 +2.0
1,541,569 - -0.1
1,541,569 - HMPREF1058_RS13270 0.43 +0.1
1,541,604 + HMPREF1058_RS13270 0.46 -0.3
1,541,694 + HMPREF1058_RS13270 0.53 +0.3
1,541,694 + HMPREF1058_RS13270 0.53 +0.5
1,541,879 + HMPREF1058_RS13270 0.68 +0.2
1,541,879 + HMPREF1058_RS13270 0.68 -0.4
1,541,933 - HMPREF1058_RS13270 0.72 +0.0
1,541,955 - HMPREF1058_RS13270 0.74 -0.5
1,541,957 + HMPREF1058_RS13270 0.74 +0.0
1,541,958 - HMPREF1058_RS13270 0.74 -0.2
1,541,993 + HMPREF1058_RS13270 0.77 -0.7
1,542,003 - HMPREF1058_RS13270 0.78 -0.2
1,542,064 - HMPREF1058_RS13270 0.83 +1.2
1,542,081 - HMPREF1058_RS13270 0.84 -0.3
1,542,119 + HMPREF1058_RS13270 0.87 -0.3
1,542,120 - HMPREF1058_RS13270 0.87 -0.3
1,542,134 + HMPREF1058_RS13270 0.88 -0.8
1,542,153 + HMPREF1058_RS13270 0.90 +1.0
1,542,197 + +1.2
1,542,233 + -0.6
1,542,248 - +1.6
1,542,249 + +0.6
1,542,249 + -0.6
1,542,296 + +0.0
1,542,297 - -0.4
1,542,314 + +1.4
1,542,384 - -0.7
1,542,394 + +0.9
1,542,420 + +0.6
1,542,573 + HMPREF1058_RS13265 0.11 +1.0
1,542,584 + HMPREF1058_RS13265 0.12 -0.9
1,542,604 + HMPREF1058_RS13265 0.13 -0.2
1,542,604 + HMPREF1058_RS13265 0.13 +0.3
1,542,634 - HMPREF1058_RS13265 0.15 -0.1
1,542,634 - HMPREF1058_RS13265 0.15 +0.4
1,542,749 - HMPREF1058_RS13265 0.24 +0.0
1,542,749 - HMPREF1058_RS13265 0.24 +0.4
1,542,749 - HMPREF1058_RS13265 0.24 -0.3
1,542,749 - HMPREF1058_RS13265 0.24 +0.0
1,542,749 - HMPREF1058_RS13265 0.24 +0.2
1,542,750 + HMPREF1058_RS13265 0.24 -0.2
1,542,750 + HMPREF1058_RS13265 0.24 -0.0
1,542,751 - HMPREF1058_RS13265 0.24 -0.4
1,542,751 - HMPREF1058_RS13265 0.24 -0.8
1,542,751 - HMPREF1058_RS13265 0.24 -0.5
1,542,756 + HMPREF1058_RS13265 0.25 -0.2
1,542,756 + HMPREF1058_RS13265 0.25 -0.8
1,542,822 - HMPREF1058_RS13265 0.30 +0.2
1,542,822 - HMPREF1058_RS13265 0.30 -0.3
1,542,848 + HMPREF1058_RS13265 0.32 +0.1
1,542,848 + HMPREF1058_RS13265 0.32 +1.0
1,542,849 - HMPREF1058_RS13265 0.32 +0.0
1,543,089 - HMPREF1058_RS13265 0.50 +0.9
1,543,121 - HMPREF1058_RS13265 0.52 +2.2
1,543,158 - HMPREF1058_RS13265 0.55 +0.3
1,543,158 - HMPREF1058_RS13265 0.55 -0.3
1,543,161 + HMPREF1058_RS13265 0.55 -0.1
1,543,263 - HMPREF1058_RS13265 0.63 +2.3
1,543,356 - HMPREF1058_RS13265 0.70 +0.1
1,543,360 + HMPREF1058_RS13265 0.70 +0.4
1,543,360 + HMPREF1058_RS13265 0.70 -1.4
1,543,361 - HMPREF1058_RS13265 0.70 -0.3
1,543,361 - HMPREF1058_RS13265 0.70 +0.4
1,543,437 + HMPREF1058_RS13265 0.76 -0.4
1,543,438 - HMPREF1058_RS13265 0.76 -0.2
1,543,445 + HMPREF1058_RS13265 0.77 -0.3
1,543,445 + HMPREF1058_RS13265 0.77 +1.6
1,543,530 + HMPREF1058_RS13265 0.83 +0.3
1,543,531 - HMPREF1058_RS13265 0.83 -1.5
1,543,575 + HMPREF1058_RS13265 0.86 -0.4
1,543,575 + HMPREF1058_RS13265 0.86 -1.5
1,543,575 + HMPREF1058_RS13265 0.86 -0.4
1,543,603 + +0.8
1,543,603 + HMPREF1058_RS13265 0.88 +0.4
1,543,603 + HMPREF1058_RS13265 0.88 -0.5
1,543,604 - HMPREF1058_RS13265 0.89 +1.4
1,543,604 - HMPREF1058_RS13265 0.89 +0.2
1,543,607 + HMPREF1058_RS13265 0.89 -1.0
1,543,607 + HMPREF1058_RS13265 0.89 -0.1
1,543,625 + -2.1
1,543,688 + -1.5
1,543,689 - -0.4
1,543,692 + +0.3
1,543,722 - -0.2
1,543,726 + +0.2
1,543,726 + -0.1
1,543,727 - +0.1
1,543,727 - +0.2
1,543,754 - +1.0
1,543,827 + -0.4
1,543,859 - -1.0
1,543,864 - -0.9
1,543,864 - +1.0
1,543,867 + -0.1
1,543,868 - +0.4
1,544,047 - -1.3
1,544,053 + -0.4
1,544,053 + -0.9
1,544,129 - -0.2
1,544,158 + -0.9
1,544,158 + +0.5
1,544,161 + +0.8
1,544,170 + -1.1
1,544,214 + -0.6
1,544,273 - -0.8
1,544,294 + -1.1
1,544,352 + +1.3
1,544,353 - +0.8
1,544,403 + HMPREF1058_RS13260 0.12 -0.9
1,544,403 + HMPREF1058_RS13260 0.12 +2.4
1,544,404 - HMPREF1058_RS13260 0.12 -1.7
1,544,404 - HMPREF1058_RS13260 0.12 -0.4
1,544,412 + HMPREF1058_RS13260 0.13 +0.1
1,544,520 - HMPREF1058_RS13260 0.21 -0.2
1,544,682 + HMPREF1058_RS13260 0.32 +0.7
1,544,682 + HMPREF1058_RS13260 0.32 +0.1
1,544,683 - HMPREF1058_RS13260 0.33 -0.0
1,544,716 + HMPREF1058_RS13260 0.35 +0.5

Or see this region's nucleotide sequence