Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12285 and HMPREF1058_RS12280 are separated by 448 nucleotides HMPREF1058_RS12280 and HMPREF1058_RS12275 are separated by 21 nucleotides
HMPREF1058_RS12285: HMPREF1058_RS12285 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 152,221 to 153,735
_RS12285
HMPREF1058_RS12280: HMPREF1058_RS12280 - GntR family transcriptional regulator, at 154,184 to 155,164
_RS12280
HMPREF1058_RS12275: HMPREF1058_RS12275 - L-fucose isomerase, at 155,186 to 156,961
_RS12275
Position (kb) 154
155
156 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 153.736 kb on - strand at 153.864 kb on - strand at 153.989 kb on + strand at 153.990 kb on - strand at 154.007 kb on - strand at 154.011 kb on - strand at 154.026 kb on + strand at 154.027 kb on - strand at 154.027 kb on - strand at 154.031 kb on - strand at 154.057 kb on + strand at 154.175 kb on - strand at 154.266 kb on - strand at 154.372 kb on - strand, within HMPREF1058_RS12280 at 154.375 kb on - strand, within HMPREF1058_RS12280 at 154.382 kb on - strand, within HMPREF1058_RS12280 at 154.401 kb on - strand, within HMPREF1058_RS12280 at 154.401 kb on - strand, within HMPREF1058_RS12280 at 154.401 kb on - strand, within HMPREF1058_RS12280 at 154.417 kb on + strand, within HMPREF1058_RS12280 at 154.418 kb on - strand, within HMPREF1058_RS12280 at 154.445 kb on + strand, within HMPREF1058_RS12280 at 154.469 kb on + strand, within HMPREF1058_RS12280 at 154.469 kb on + strand, within HMPREF1058_RS12280 at 154.469 kb on + strand, within HMPREF1058_RS12280 at 154.510 kb on - strand, within HMPREF1058_RS12280 at 154.531 kb on + strand, within HMPREF1058_RS12280 at 154.532 kb on - strand, within HMPREF1058_RS12280 at 154.557 kb on + strand, within HMPREF1058_RS12280 at 154.557 kb on + strand, within HMPREF1058_RS12280 at 154.578 kb on - strand, within HMPREF1058_RS12280 at 154.617 kb on + strand at 154.701 kb on + strand, within HMPREF1058_RS12280 at 154.701 kb on + strand, within HMPREF1058_RS12280 at 154.727 kb on + strand, within HMPREF1058_RS12280 at 154.779 kb on + strand, within HMPREF1058_RS12280 at 154.912 kb on - strand, within HMPREF1058_RS12280 at 154.914 kb on - strand, within HMPREF1058_RS12280 at 154.914 kb on - strand, within HMPREF1058_RS12280 at 154.915 kb on + strand, within HMPREF1058_RS12280 at 154.915 kb on + strand, within HMPREF1058_RS12280 at 154.933 kb on - strand, within HMPREF1058_RS12280 at 154.945 kb on + strand, within HMPREF1058_RS12280 at 154.945 kb on + strand, within HMPREF1058_RS12280 at 154.945 kb on + strand, within HMPREF1058_RS12280 at 154.947 kb on + strand, within HMPREF1058_RS12280 at 155.006 kb on + strand, within HMPREF1058_RS12280 at 155.100 kb on + strand at 155.116 kb on - strand at 155.118 kb on + strand at 155.126 kb on + strand at 155.148 kb on + strand at 155.162 kb on + strand at 155.180 kb on + strand at 155.181 kb on - strand at 155.181 kb on - strand at 155.182 kb on + strand at 155.183 kb on - strand at 155.594 kb on + strand, within HMPREF1058_RS12275 at 155.792 kb on - strand, within HMPREF1058_RS12275 at 155.844 kb on - strand, within HMPREF1058_RS12275 at 155.975 kb on - strand, within HMPREF1058_RS12275 at 156.056 kb on - strand, within HMPREF1058_RS12275 at 156.064 kb on + strand, within HMPREF1058_RS12275
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 153,736 - -0.6 153,864 - -1.0 153,989 + +1.0 153,990 - +0.2 154,007 - -1.4 154,011 - -0.5 154,026 + +0.1 154,027 - +0.8 154,027 - -0.0 154,031 - -0.0 154,057 + +0.2 154,175 - -3.8 154,266 - -4.4 154,372 - HMPREF1058_RS12280 0.19 -3.3 154,375 - HMPREF1058_RS12280 0.19 -2.4 154,382 - HMPREF1058_RS12280 0.20 -4.5 154,401 - HMPREF1058_RS12280 0.22 -1.3 154,401 - HMPREF1058_RS12280 0.22 -3.6 154,401 - HMPREF1058_RS12280 0.22 -3.4 154,417 + HMPREF1058_RS12280 0.24 -2.3 154,418 - HMPREF1058_RS12280 0.24 -4.2 154,445 + HMPREF1058_RS12280 0.27 -1.9 154,469 + HMPREF1058_RS12280 0.29 -2.3 154,469 + HMPREF1058_RS12280 0.29 -2.0 154,469 + HMPREF1058_RS12280 0.29 -1.9 154,510 - HMPREF1058_RS12280 0.33 -5.0 154,531 + HMPREF1058_RS12280 0.35 -3.1 154,532 - HMPREF1058_RS12280 0.35 -6.1 154,557 + HMPREF1058_RS12280 0.38 -1.8 154,557 + HMPREF1058_RS12280 0.38 -2.6 154,578 - HMPREF1058_RS12280 0.40 -2.1 154,617 + +1.4 154,701 + HMPREF1058_RS12280 0.53 +0.0 154,701 + HMPREF1058_RS12280 0.53 -0.6 154,727 + HMPREF1058_RS12280 0.55 -1.3 154,779 + HMPREF1058_RS12280 0.61 +0.2 154,912 - HMPREF1058_RS12280 0.74 -4.1 154,914 - HMPREF1058_RS12280 0.74 -6.0 154,914 - HMPREF1058_RS12280 0.74 -3.5 154,915 + HMPREF1058_RS12280 0.75 -0.3 154,915 + HMPREF1058_RS12280 0.75 -0.4 154,933 - HMPREF1058_RS12280 0.76 -1.6 154,945 + HMPREF1058_RS12280 0.78 +0.4 154,945 + HMPREF1058_RS12280 0.78 -0.4 154,945 + HMPREF1058_RS12280 0.78 -0.6 154,947 + HMPREF1058_RS12280 0.78 -1.2 155,006 + HMPREF1058_RS12280 0.84 +0.3 155,100 + +0.6 155,116 - -5.3 155,118 + -0.4 155,126 + +2.1 155,148 + +1.6 155,162 + +0.5 155,180 + -1.3 155,181 - -4.5 155,181 - -2.7 155,182 + -5.2 155,183 - -3.6 155,594 + HMPREF1058_RS12275 0.23 -4.4 155,792 - HMPREF1058_RS12275 0.34 -1.3 155,844 - HMPREF1058_RS12275 0.37 -4.6 155,975 - HMPREF1058_RS12275 0.44 -5.3 156,056 - HMPREF1058_RS12275 0.49 -4.4 156,064 + HMPREF1058_RS12275 0.49 -5.8
Or see this region's nucleotide sequence