Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12280 and HMPREF1058_RS12275 are separated by 21 nucleotides HMPREF1058_RS12275 and HMPREF1058_RS12270 are separated by 111 nucleotides
HMPREF1058_RS12280: HMPREF1058_RS12280 - GntR family transcriptional regulator, at 154,184 to 155,164
_RS12280
HMPREF1058_RS12275: HMPREF1058_RS12275 - L-fucose isomerase, at 155,186 to 156,961
_RS12275
HMPREF1058_RS12270: HMPREF1058_RS12270 - L-fucose:H+ symporter permease, at 157,073 to 158,386
_RS12270
Position (kb) 155
156
157 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 154.266 kb on - strand at 154.372 kb on - strand, within HMPREF1058_RS12280 at 154.375 kb on - strand, within HMPREF1058_RS12280 at 154.382 kb on - strand, within HMPREF1058_RS12280 at 154.401 kb on - strand, within HMPREF1058_RS12280 at 154.401 kb on - strand, within HMPREF1058_RS12280 at 154.401 kb on - strand, within HMPREF1058_RS12280 at 154.417 kb on + strand, within HMPREF1058_RS12280 at 154.418 kb on - strand, within HMPREF1058_RS12280 at 154.445 kb on + strand, within HMPREF1058_RS12280 at 154.469 kb on + strand, within HMPREF1058_RS12280 at 154.469 kb on + strand, within HMPREF1058_RS12280 at 154.469 kb on + strand, within HMPREF1058_RS12280 at 154.510 kb on - strand, within HMPREF1058_RS12280 at 154.531 kb on + strand, within HMPREF1058_RS12280 at 154.532 kb on - strand, within HMPREF1058_RS12280 at 154.557 kb on + strand, within HMPREF1058_RS12280 at 154.557 kb on + strand, within HMPREF1058_RS12280 at 154.578 kb on - strand, within HMPREF1058_RS12280 at 154.617 kb on + strand at 154.701 kb on + strand, within HMPREF1058_RS12280 at 154.701 kb on + strand, within HMPREF1058_RS12280 at 154.727 kb on + strand, within HMPREF1058_RS12280 at 154.779 kb on + strand, within HMPREF1058_RS12280 at 154.912 kb on - strand, within HMPREF1058_RS12280 at 154.914 kb on - strand, within HMPREF1058_RS12280 at 154.914 kb on - strand, within HMPREF1058_RS12280 at 154.915 kb on + strand, within HMPREF1058_RS12280 at 154.915 kb on + strand, within HMPREF1058_RS12280 at 154.933 kb on - strand, within HMPREF1058_RS12280 at 154.945 kb on + strand, within HMPREF1058_RS12280 at 154.945 kb on + strand, within HMPREF1058_RS12280 at 154.945 kb on + strand, within HMPREF1058_RS12280 at 154.947 kb on + strand, within HMPREF1058_RS12280 at 155.006 kb on + strand, within HMPREF1058_RS12280 at 155.100 kb on + strand at 155.116 kb on - strand at 155.118 kb on + strand at 155.126 kb on + strand at 155.148 kb on + strand at 155.162 kb on + strand at 155.180 kb on + strand at 155.181 kb on - strand at 155.181 kb on - strand at 155.182 kb on + strand at 155.183 kb on - strand at 155.594 kb on + strand, within HMPREF1058_RS12275 at 155.792 kb on - strand, within HMPREF1058_RS12275 at 155.844 kb on - strand, within HMPREF1058_RS12275 at 155.975 kb on - strand, within HMPREF1058_RS12275 at 156.056 kb on - strand, within HMPREF1058_RS12275 at 156.064 kb on + strand, within HMPREF1058_RS12275 at 156.278 kb on - strand, within HMPREF1058_RS12275 at 156.278 kb on - strand, within HMPREF1058_RS12275 at 156.507 kb on - strand, within HMPREF1058_RS12275 at 156.545 kb on - strand, within HMPREF1058_RS12275 at 156.586 kb on - strand, within HMPREF1058_RS12275 at 156.630 kb on + strand, within HMPREF1058_RS12275 at 156.671 kb on - strand, within HMPREF1058_RS12275 at 156.689 kb on - strand, within HMPREF1058_RS12275 at 156.691 kb on + strand, within HMPREF1058_RS12275 at 156.692 kb on - strand, within HMPREF1058_RS12275 at 156.692 kb on - strand, within HMPREF1058_RS12275 at 156.811 kb on - strand at 156.811 kb on - strand at 156.823 kb on + strand at 156.824 kb on - strand at 156.824 kb on - strand at 156.829 kb on - strand at 156.845 kb on - strand at 156.855 kb on + strand at 156.856 kb on - strand at 156.949 kb on + strand at 156.950 kb on - strand at 156.953 kb on + strand at 156.960 kb on - strand at 156.967 kb on - strand at 157.004 kb on - strand at 157.005 kb on + strand at 157.006 kb on - strand at 157.119 kb on - strand at 157.294 kb on + strand, within HMPREF1058_RS12270 at 157.294 kb on + strand, within HMPREF1058_RS12270 at 157.294 kb on + strand, within HMPREF1058_RS12270 at 157.295 kb on - strand, within HMPREF1058_RS12270 at 157.295 kb on - strand, within HMPREF1058_RS12270 at 157.295 kb on - strand, within HMPREF1058_RS12270 at 157.317 kb on - strand, within HMPREF1058_RS12270 at 157.350 kb on - strand, within HMPREF1058_RS12270 at 157.397 kb on + strand, within HMPREF1058_RS12270 at 157.411 kb on - strand, within HMPREF1058_RS12270 at 157.419 kb on - strand, within HMPREF1058_RS12270 at 157.559 kb on + strand, within HMPREF1058_RS12270 at 157.623 kb on + strand, within HMPREF1058_RS12270 at 157.647 kb on + strand, within HMPREF1058_RS12270 at 157.647 kb on + strand, within HMPREF1058_RS12270 at 157.682 kb on + strand, within HMPREF1058_RS12270 at 157.699 kb on - strand, within HMPREF1058_RS12270 at 157.704 kb on + strand, within HMPREF1058_RS12270 at 157.704 kb on + strand, within HMPREF1058_RS12270 at 157.707 kb on + strand, within HMPREF1058_RS12270 at 157.707 kb on + strand, within HMPREF1058_RS12270 at 157.707 kb on + strand, within HMPREF1058_RS12270 at 157.712 kb on - strand, within HMPREF1058_RS12270 at 157.726 kb on - strand, within HMPREF1058_RS12270 at 157.795 kb on + strand, within HMPREF1058_RS12270 at 157.845 kb on - strand, within HMPREF1058_RS12270 at 157.845 kb on - strand, within HMPREF1058_RS12270 at 157.848 kb on + strand, within HMPREF1058_RS12270 at 157.848 kb on + strand, within HMPREF1058_RS12270 at 157.916 kb on - strand, within HMPREF1058_RS12270 at 157.957 kb on + strand, within HMPREF1058_RS12270 at 157.957 kb on + strand, within HMPREF1058_RS12270 at 157.957 kb on + strand, within HMPREF1058_RS12270 at 157.958 kb on - strand, within HMPREF1058_RS12270
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 154,266 - -4.4 154,372 - HMPREF1058_RS12280 0.19 -3.3 154,375 - HMPREF1058_RS12280 0.19 -2.4 154,382 - HMPREF1058_RS12280 0.20 -4.5 154,401 - HMPREF1058_RS12280 0.22 -1.3 154,401 - HMPREF1058_RS12280 0.22 -3.6 154,401 - HMPREF1058_RS12280 0.22 -3.4 154,417 + HMPREF1058_RS12280 0.24 -2.3 154,418 - HMPREF1058_RS12280 0.24 -4.2 154,445 + HMPREF1058_RS12280 0.27 -1.9 154,469 + HMPREF1058_RS12280 0.29 -2.3 154,469 + HMPREF1058_RS12280 0.29 -2.0 154,469 + HMPREF1058_RS12280 0.29 -1.9 154,510 - HMPREF1058_RS12280 0.33 -5.0 154,531 + HMPREF1058_RS12280 0.35 -3.1 154,532 - HMPREF1058_RS12280 0.35 -6.1 154,557 + HMPREF1058_RS12280 0.38 -1.8 154,557 + HMPREF1058_RS12280 0.38 -2.6 154,578 - HMPREF1058_RS12280 0.40 -2.1 154,617 + +1.4 154,701 + HMPREF1058_RS12280 0.53 +0.0 154,701 + HMPREF1058_RS12280 0.53 -0.6 154,727 + HMPREF1058_RS12280 0.55 -1.3 154,779 + HMPREF1058_RS12280 0.61 +0.2 154,912 - HMPREF1058_RS12280 0.74 -4.1 154,914 - HMPREF1058_RS12280 0.74 -6.0 154,914 - HMPREF1058_RS12280 0.74 -3.5 154,915 + HMPREF1058_RS12280 0.75 -0.3 154,915 + HMPREF1058_RS12280 0.75 -0.4 154,933 - HMPREF1058_RS12280 0.76 -1.6 154,945 + HMPREF1058_RS12280 0.78 +0.4 154,945 + HMPREF1058_RS12280 0.78 -0.4 154,945 + HMPREF1058_RS12280 0.78 -0.6 154,947 + HMPREF1058_RS12280 0.78 -1.2 155,006 + HMPREF1058_RS12280 0.84 +0.3 155,100 + +0.6 155,116 - -5.3 155,118 + -0.4 155,126 + +2.1 155,148 + +1.6 155,162 + +0.5 155,180 + -1.3 155,181 - -4.5 155,181 - -2.7 155,182 + -5.2 155,183 - -3.6 155,594 + HMPREF1058_RS12275 0.23 -4.4 155,792 - HMPREF1058_RS12275 0.34 -1.3 155,844 - HMPREF1058_RS12275 0.37 -4.6 155,975 - HMPREF1058_RS12275 0.44 -5.3 156,056 - HMPREF1058_RS12275 0.49 -4.4 156,064 + HMPREF1058_RS12275 0.49 -5.8 156,278 - HMPREF1058_RS12275 0.61 -4.2 156,278 - HMPREF1058_RS12275 0.61 -4.8 156,507 - HMPREF1058_RS12275 0.74 -6.5 156,545 - HMPREF1058_RS12275 0.77 -1.0 156,586 - HMPREF1058_RS12275 0.79 -3.4 156,630 + HMPREF1058_RS12275 0.81 -2.9 156,671 - HMPREF1058_RS12275 0.84 -3.4 156,689 - HMPREF1058_RS12275 0.85 -3.0 156,691 + HMPREF1058_RS12275 0.85 -2.7 156,692 - HMPREF1058_RS12275 0.85 -5.2 156,692 - HMPREF1058_RS12275 0.85 -2.5 156,811 - -4.2 156,811 - -3.6 156,823 + -4.4 156,824 - -4.5 156,824 - -2.3 156,829 - -4.1 156,845 - -4.9 156,855 + -6.2 156,856 - -3.7 156,949 + -4.5 156,950 - -1.3 156,953 + -2.8 156,960 - -3.1 156,967 - -2.6 157,004 - -1.0 157,005 + -3.6 157,006 - -3.9 157,119 - -3.1 157,294 + HMPREF1058_RS12270 0.17 -0.8 157,294 + HMPREF1058_RS12270 0.17 -3.2 157,294 + HMPREF1058_RS12270 0.17 -2.4 157,295 - HMPREF1058_RS12270 0.17 -4.3 157,295 - HMPREF1058_RS12270 0.17 -2.3 157,295 - HMPREF1058_RS12270 0.17 -4.7 157,317 - HMPREF1058_RS12270 0.19 -0.6 157,350 - HMPREF1058_RS12270 0.21 -4.7 157,397 + HMPREF1058_RS12270 0.25 -3.5 157,411 - HMPREF1058_RS12270 0.26 -1.3 157,419 - HMPREF1058_RS12270 0.26 -4.7 157,559 + HMPREF1058_RS12270 0.37 -3.0 157,623 + HMPREF1058_RS12270 0.42 -2.7 157,647 + HMPREF1058_RS12270 0.44 -3.0 157,647 + HMPREF1058_RS12270 0.44 -3.1 157,682 + HMPREF1058_RS12270 0.46 +2.0 157,699 - HMPREF1058_RS12270 0.48 -3.7 157,704 + HMPREF1058_RS12270 0.48 -2.9 157,704 + HMPREF1058_RS12270 0.48 -2.6 157,707 + HMPREF1058_RS12270 0.48 -1.4 157,707 + HMPREF1058_RS12270 0.48 -0.6 157,707 + HMPREF1058_RS12270 0.48 -2.1 157,712 - HMPREF1058_RS12270 0.49 -1.3 157,726 - HMPREF1058_RS12270 0.50 -4.0 157,795 + HMPREF1058_RS12270 0.55 -2.6 157,845 - HMPREF1058_RS12270 0.59 -1.2 157,845 - HMPREF1058_RS12270 0.59 -1.2 157,848 + HMPREF1058_RS12270 0.59 -2.8 157,848 + HMPREF1058_RS12270 0.59 -1.6 157,916 - HMPREF1058_RS12270 0.64 -3.5 157,957 + HMPREF1058_RS12270 0.67 -3.7 157,957 + HMPREF1058_RS12270 0.67 -3.3 157,957 + HMPREF1058_RS12270 0.67 -3.3 157,958 - HMPREF1058_RS12270 0.67 -0.3
Or see this region's nucleotide sequence