Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12275 and HMPREF1058_RS12270 are separated by 111 nucleotides HMPREF1058_RS12270 and HMPREF1058_RS12265 are separated by 142 nucleotides HMPREF1058_RS12265 and HMPREF1058_RS12260 are separated by 101 nucleotides
HMPREF1058_RS12275: HMPREF1058_RS12275 - L-fucose isomerase, at 155,186 to 156,961
_RS12275
HMPREF1058_RS12270: HMPREF1058_RS12270 - L-fucose:H+ symporter permease, at 157,073 to 158,386
_RS12270
HMPREF1058_RS12265: HMPREF1058_RS12265 - ribonuclease HII, at 158,529 to 159,134
_RS12265
HMPREF1058_RS12260: HMPREF1058_RS12260 - tetratricopeptide repeat protein, at 159,236 to 160,861
_RS12260
Position (kb) 157
158
159 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 156.278 kb on - strand, within HMPREF1058_RS12275 at 156.278 kb on - strand, within HMPREF1058_RS12275 at 156.507 kb on - strand, within HMPREF1058_RS12275 at 156.545 kb on - strand, within HMPREF1058_RS12275 at 156.586 kb on - strand, within HMPREF1058_RS12275 at 156.630 kb on + strand, within HMPREF1058_RS12275 at 156.671 kb on - strand, within HMPREF1058_RS12275 at 156.689 kb on - strand, within HMPREF1058_RS12275 at 156.691 kb on + strand, within HMPREF1058_RS12275 at 156.692 kb on - strand, within HMPREF1058_RS12275 at 156.692 kb on - strand, within HMPREF1058_RS12275 at 156.811 kb on - strand at 156.811 kb on - strand at 156.823 kb on + strand at 156.824 kb on - strand at 156.824 kb on - strand at 156.829 kb on - strand at 156.845 kb on - strand at 156.855 kb on + strand at 156.856 kb on - strand at 156.949 kb on + strand at 156.950 kb on - strand at 156.953 kb on + strand at 156.960 kb on - strand at 156.967 kb on - strand at 157.004 kb on - strand at 157.005 kb on + strand at 157.006 kb on - strand at 157.119 kb on - strand at 157.294 kb on + strand, within HMPREF1058_RS12270 at 157.294 kb on + strand, within HMPREF1058_RS12270 at 157.294 kb on + strand, within HMPREF1058_RS12270 at 157.295 kb on - strand, within HMPREF1058_RS12270 at 157.295 kb on - strand, within HMPREF1058_RS12270 at 157.295 kb on - strand, within HMPREF1058_RS12270 at 157.317 kb on - strand, within HMPREF1058_RS12270 at 157.350 kb on - strand, within HMPREF1058_RS12270 at 157.397 kb on + strand, within HMPREF1058_RS12270 at 157.411 kb on - strand, within HMPREF1058_RS12270 at 157.419 kb on - strand, within HMPREF1058_RS12270 at 157.559 kb on + strand, within HMPREF1058_RS12270 at 157.623 kb on + strand, within HMPREF1058_RS12270 at 157.647 kb on + strand, within HMPREF1058_RS12270 at 157.647 kb on + strand, within HMPREF1058_RS12270 at 157.682 kb on + strand, within HMPREF1058_RS12270 at 157.699 kb on - strand, within HMPREF1058_RS12270 at 157.704 kb on + strand, within HMPREF1058_RS12270 at 157.704 kb on + strand, within HMPREF1058_RS12270 at 157.707 kb on + strand, within HMPREF1058_RS12270 at 157.707 kb on + strand, within HMPREF1058_RS12270 at 157.707 kb on + strand, within HMPREF1058_RS12270 at 157.712 kb on - strand, within HMPREF1058_RS12270 at 157.726 kb on - strand, within HMPREF1058_RS12270 at 157.795 kb on + strand, within HMPREF1058_RS12270 at 157.845 kb on - strand, within HMPREF1058_RS12270 at 157.845 kb on - strand, within HMPREF1058_RS12270 at 157.848 kb on + strand, within HMPREF1058_RS12270 at 157.848 kb on + strand, within HMPREF1058_RS12270 at 157.916 kb on - strand, within HMPREF1058_RS12270 at 157.957 kb on + strand, within HMPREF1058_RS12270 at 157.957 kb on + strand, within HMPREF1058_RS12270 at 157.957 kb on + strand, within HMPREF1058_RS12270 at 157.958 kb on - strand, within HMPREF1058_RS12270 at 157.993 kb on + strand, within HMPREF1058_RS12270 at 157.993 kb on + strand, within HMPREF1058_RS12270 at 158.043 kb on + strand, within HMPREF1058_RS12270 at 158.044 kb on - strand, within HMPREF1058_RS12270 at 158.108 kb on + strand, within HMPREF1058_RS12270 at 158.108 kb on + strand, within HMPREF1058_RS12270 at 158.108 kb on + strand, within HMPREF1058_RS12270 at 158.109 kb on - strand, within HMPREF1058_RS12270 at 158.134 kb on + strand, within HMPREF1058_RS12270 at 158.135 kb on - strand, within HMPREF1058_RS12270 at 158.264 kb on - strand at 158.279 kb on - strand at 158.302 kb on - strand at 158.326 kb on + strand at 158.327 kb on - strand at 158.327 kb on - strand at 158.347 kb on + strand at 158.366 kb on + strand at 158.441 kb on + strand at 158.466 kb on + strand at 158.481 kb on - strand at 158.514 kb on + strand at 158.516 kb on + strand at 158.519 kb on - strand at 158.519 kb on - strand at 158.545 kb on - strand at 158.631 kb on - strand, within HMPREF1058_RS12265 at 158.639 kb on - strand, within HMPREF1058_RS12265 at 158.648 kb on + strand, within HMPREF1058_RS12265 at 158.649 kb on - strand, within HMPREF1058_RS12265 at 158.696 kb on - strand, within HMPREF1058_RS12265 at 158.708 kb on - strand, within HMPREF1058_RS12265 at 158.724 kb on - strand, within HMPREF1058_RS12265 at 158.889 kb on - strand, within HMPREF1058_RS12265 at 158.892 kb on + strand, within HMPREF1058_RS12265 at 158.901 kb on + strand, within HMPREF1058_RS12265 at 159.021 kb on - strand, within HMPREF1058_RS12265 at 159.039 kb on - strand, within HMPREF1058_RS12265 at 159.054 kb on + strand, within HMPREF1058_RS12265 at 159.054 kb on + strand, within HMPREF1058_RS12265 at 159.122 kb on - strand at 159.126 kb on + strand at 159.134 kb on + strand at 159.135 kb on - strand at 159.135 kb on - strand at 159.135 kb on - strand at 159.164 kb on - strand at 159.172 kb on - strand at 159.235 kb on + strand at 159.249 kb on + strand at 159.255 kb on + strand at 159.255 kb on + strand at 159.258 kb on - strand at 159.259 kb on + strand at 159.259 kb on + strand at 159.260 kb on - strand at 159.352 kb on - strand at 159.354 kb on - strand at 159.354 kb on - strand at 159.354 kb on - strand at 159.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 156,278 - HMPREF1058_RS12275 0.61 -4.2 156,278 - HMPREF1058_RS12275 0.61 -4.8 156,507 - HMPREF1058_RS12275 0.74 -6.5 156,545 - HMPREF1058_RS12275 0.77 -1.0 156,586 - HMPREF1058_RS12275 0.79 -3.4 156,630 + HMPREF1058_RS12275 0.81 -2.9 156,671 - HMPREF1058_RS12275 0.84 -3.4 156,689 - HMPREF1058_RS12275 0.85 -3.0 156,691 + HMPREF1058_RS12275 0.85 -2.7 156,692 - HMPREF1058_RS12275 0.85 -5.2 156,692 - HMPREF1058_RS12275 0.85 -2.5 156,811 - -4.2 156,811 - -3.6 156,823 + -4.4 156,824 - -4.5 156,824 - -2.3 156,829 - -4.1 156,845 - -4.9 156,855 + -6.2 156,856 - -3.7 156,949 + -4.5 156,950 - -1.3 156,953 + -2.8 156,960 - -3.1 156,967 - -2.6 157,004 - -1.0 157,005 + -3.6 157,006 - -3.9 157,119 - -3.1 157,294 + HMPREF1058_RS12270 0.17 -0.8 157,294 + HMPREF1058_RS12270 0.17 -3.2 157,294 + HMPREF1058_RS12270 0.17 -2.4 157,295 - HMPREF1058_RS12270 0.17 -4.3 157,295 - HMPREF1058_RS12270 0.17 -2.3 157,295 - HMPREF1058_RS12270 0.17 -4.7 157,317 - HMPREF1058_RS12270 0.19 -0.6 157,350 - HMPREF1058_RS12270 0.21 -4.7 157,397 + HMPREF1058_RS12270 0.25 -3.5 157,411 - HMPREF1058_RS12270 0.26 -1.3 157,419 - HMPREF1058_RS12270 0.26 -4.7 157,559 + HMPREF1058_RS12270 0.37 -3.0 157,623 + HMPREF1058_RS12270 0.42 -2.7 157,647 + HMPREF1058_RS12270 0.44 -3.0 157,647 + HMPREF1058_RS12270 0.44 -3.1 157,682 + HMPREF1058_RS12270 0.46 +2.0 157,699 - HMPREF1058_RS12270 0.48 -3.7 157,704 + HMPREF1058_RS12270 0.48 -2.9 157,704 + HMPREF1058_RS12270 0.48 -2.6 157,707 + HMPREF1058_RS12270 0.48 -1.4 157,707 + HMPREF1058_RS12270 0.48 -0.6 157,707 + HMPREF1058_RS12270 0.48 -2.1 157,712 - HMPREF1058_RS12270 0.49 -1.3 157,726 - HMPREF1058_RS12270 0.50 -4.0 157,795 + HMPREF1058_RS12270 0.55 -2.6 157,845 - HMPREF1058_RS12270 0.59 -1.2 157,845 - HMPREF1058_RS12270 0.59 -1.2 157,848 + HMPREF1058_RS12270 0.59 -2.8 157,848 + HMPREF1058_RS12270 0.59 -1.6 157,916 - HMPREF1058_RS12270 0.64 -3.5 157,957 + HMPREF1058_RS12270 0.67 -3.7 157,957 + HMPREF1058_RS12270 0.67 -3.3 157,957 + HMPREF1058_RS12270 0.67 -3.3 157,958 - HMPREF1058_RS12270 0.67 -0.3 157,993 + HMPREF1058_RS12270 0.70 -4.5 157,993 + HMPREF1058_RS12270 0.70 -2.1 158,043 + HMPREF1058_RS12270 0.74 -4.3 158,044 - HMPREF1058_RS12270 0.74 -4.0 158,108 + HMPREF1058_RS12270 0.79 -3.2 158,108 + HMPREF1058_RS12270 0.79 -1.9 158,108 + HMPREF1058_RS12270 0.79 -4.3 158,109 - HMPREF1058_RS12270 0.79 -3.2 158,134 + HMPREF1058_RS12270 0.81 -3.9 158,135 - HMPREF1058_RS12270 0.81 -3.0 158,264 - -3.7 158,279 - -1.8 158,302 - -3.1 158,326 + -3.6 158,327 - -2.4 158,327 - -1.6 158,347 + -3.8 158,366 + -2.2 158,441 + -0.5 158,466 + -1.2 158,481 - +0.4 158,514 + -0.4 158,516 + +0.4 158,519 - -0.5 158,519 - -2.3 158,545 - -0.5 158,631 - HMPREF1058_RS12265 0.17 -1.1 158,639 - HMPREF1058_RS12265 0.18 +1.2 158,648 + HMPREF1058_RS12265 0.20 -0.0 158,649 - HMPREF1058_RS12265 0.20 -0.4 158,696 - HMPREF1058_RS12265 0.28 +1.0 158,708 - HMPREF1058_RS12265 0.30 +0.1 158,724 - HMPREF1058_RS12265 0.32 -0.4 158,889 - HMPREF1058_RS12265 0.59 -0.4 158,892 + HMPREF1058_RS12265 0.60 -0.7 158,901 + HMPREF1058_RS12265 0.61 -0.9 159,021 - HMPREF1058_RS12265 0.81 -2.0 159,039 - HMPREF1058_RS12265 0.84 -1.0 159,054 + HMPREF1058_RS12265 0.87 +0.1 159,054 + HMPREF1058_RS12265 0.87 +0.5 159,122 - -0.0 159,126 + +0.1 159,134 + +0.6 159,135 - -0.4 159,135 - +0.4 159,135 - +0.6 159,164 - -0.5 159,172 - -0.5 159,235 + -0.1 159,249 + -0.1 159,255 + +0.3 159,255 + -1.4 159,258 - -0.5 159,259 + +1.6 159,259 + -0.5 159,260 - -0.2 159,352 - +0.3 159,354 - +0.3 159,354 - -0.3 159,354 - +0.7 159,378 - -0.3
Or see this region's nucleotide sequence