Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11685 and HMPREF1058_RS11680 are separated by 80 nucleotides HMPREF1058_RS11680 and HMPREF1058_RS11675 are separated by 594 nucleotides
HMPREF1058_RS11685: HMPREF1058_RS11685 - DNA-protecting protein DprA, at 315,714 to 316,829
_RS11685
HMPREF1058_RS11680: HMPREF1058_RS11680 - alpha-L-fucosidase, at 316,910 to 318,793
_RS11680
HMPREF1058_RS11675: HMPREF1058_RS11675 - DUF3575 domain-containing protein, at 319,388 to 320,755
_RS11675
Position (kb) 316
317
318
319 Strain fitness (log2 ratio) -2
-1
0
1
2 at 315.926 kb on - strand, within HMPREF1058_RS11685 at 316.068 kb on - strand, within HMPREF1058_RS11685 at 316.231 kb on + strand, within HMPREF1058_RS11685 at 316.263 kb on + strand, within HMPREF1058_RS11685 at 316.735 kb on + strand at 316.735 kb on + strand at 316.736 kb on - strand at 316.827 kb on + strand at 316.828 kb on - strand at 316.835 kb on + strand at 316.836 kb on - strand at 316.849 kb on + strand at 316.850 kb on - strand at 316.850 kb on - strand at 316.851 kb on + strand at 316.851 kb on + strand at 316.851 kb on + strand at 316.852 kb on - strand at 316.863 kb on + strand at 316.864 kb on - strand at 316.897 kb on + strand at 316.898 kb on - strand at 316.922 kb on + strand at 316.923 kb on - strand at 316.983 kb on + strand at 316.984 kb on - strand at 317.128 kb on + strand, within HMPREF1058_RS11680 at 317.130 kb on + strand, within HMPREF1058_RS11680 at 317.130 kb on + strand, within HMPREF1058_RS11680 at 317.131 kb on - strand, within HMPREF1058_RS11680 at 317.184 kb on - strand, within HMPREF1058_RS11680 at 317.221 kb on + strand, within HMPREF1058_RS11680 at 317.281 kb on + strand, within HMPREF1058_RS11680 at 317.281 kb on + strand, within HMPREF1058_RS11680 at 317.290 kb on - strand, within HMPREF1058_RS11680 at 317.354 kb on + strand, within HMPREF1058_RS11680 at 317.355 kb on - strand, within HMPREF1058_RS11680 at 317.357 kb on - strand, within HMPREF1058_RS11680 at 317.503 kb on + strand, within HMPREF1058_RS11680 at 317.504 kb on - strand, within HMPREF1058_RS11680 at 317.504 kb on - strand, within HMPREF1058_RS11680 at 317.525 kb on + strand, within HMPREF1058_RS11680 at 317.526 kb on - strand, within HMPREF1058_RS11680 at 317.548 kb on - strand, within HMPREF1058_RS11680 at 317.637 kb on + strand, within HMPREF1058_RS11680 at 317.638 kb on - strand, within HMPREF1058_RS11680 at 317.638 kb on - strand, within HMPREF1058_RS11680 at 317.638 kb on - strand, within HMPREF1058_RS11680 at 317.642 kb on - strand, within HMPREF1058_RS11680 at 317.646 kb on + strand, within HMPREF1058_RS11680 at 317.646 kb on + strand, within HMPREF1058_RS11680 at 317.647 kb on - strand, within HMPREF1058_RS11680 at 317.677 kb on - strand, within HMPREF1058_RS11680 at 317.839 kb on + strand, within HMPREF1058_RS11680 at 317.996 kb on - strand, within HMPREF1058_RS11680 at 317.996 kb on - strand, within HMPREF1058_RS11680 at 318.001 kb on + strand, within HMPREF1058_RS11680 at 318.002 kb on - strand, within HMPREF1058_RS11680 at 318.002 kb on - strand, within HMPREF1058_RS11680 at 318.111 kb on - strand, within HMPREF1058_RS11680 at 318.160 kb on - strand, within HMPREF1058_RS11680 at 318.165 kb on + strand, within HMPREF1058_RS11680 at 318.183 kb on - strand, within HMPREF1058_RS11680 at 318.265 kb on - strand, within HMPREF1058_RS11680 at 318.309 kb on + strand, within HMPREF1058_RS11680 at 318.324 kb on + strand, within HMPREF1058_RS11680 at 318.324 kb on + strand, within HMPREF1058_RS11680 at 318.324 kb on + strand at 318.324 kb on + strand, within HMPREF1058_RS11680 at 318.373 kb on + strand, within HMPREF1058_RS11680 at 318.378 kb on + strand, within HMPREF1058_RS11680 at 318.378 kb on + strand, within HMPREF1058_RS11680 at 318.379 kb on - strand, within HMPREF1058_RS11680 at 318.410 kb on + strand, within HMPREF1058_RS11680 at 318.411 kb on - strand, within HMPREF1058_RS11680 at 318.433 kb on - strand, within HMPREF1058_RS11680 at 318.654 kb on + strand at 318.654 kb on + strand at 318.655 kb on - strand at 318.655 kb on - strand at 318.655 kb on - strand at 318.807 kb on + strand at 318.833 kb on - strand at 319.009 kb on - strand at 319.009 kb on - strand at 319.151 kb on + strand at 319.186 kb on + strand at 319.330 kb on + strand at 319.362 kb on - strand at 319.362 kb on - strand at 319.403 kb on - strand at 319.405 kb on + strand at 319.405 kb on + strand at 319.405 kb on + strand at 319.406 kb on - strand at 319.406 kb on - strand at 319.406 kb on - strand at 319.408 kb on - strand at 319.417 kb on - strand at 319.452 kb on - strand at 319.486 kb on + strand at 319.508 kb on + strand at 319.508 kb on + strand at 319.508 kb on + strand at 319.624 kb on + strand, within HMPREF1058_RS11675 at 319.646 kb on + strand, within HMPREF1058_RS11675 at 319.646 kb on + strand, within HMPREF1058_RS11675 at 319.713 kb on + strand, within HMPREF1058_RS11675
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 315,926 - HMPREF1058_RS11685 0.19 +0.7 316,068 - HMPREF1058_RS11685 0.32 -0.4 316,231 + HMPREF1058_RS11685 0.46 -0.5 316,263 + HMPREF1058_RS11685 0.49 -0.2 316,735 + +0.1 316,735 + -1.5 316,736 - -0.4 316,827 + +0.5 316,828 - +0.5 316,835 + +0.2 316,836 - -0.3 316,849 + -0.3 316,850 - -0.6 316,850 - -0.3 316,851 + -0.5 316,851 + +0.3 316,851 + -0.3 316,852 - -0.5 316,863 + -0.2 316,864 - +0.5 316,897 + +0.1 316,898 - +0.0 316,922 + -0.2 316,923 - -0.0 316,983 + +0.5 316,984 - +0.8 317,128 + HMPREF1058_RS11680 0.12 -1.0 317,130 + HMPREF1058_RS11680 0.12 -0.4 317,130 + HMPREF1058_RS11680 0.12 +1.2 317,131 - HMPREF1058_RS11680 0.12 -0.5 317,184 - HMPREF1058_RS11680 0.15 -1.3 317,221 + HMPREF1058_RS11680 0.17 +0.5 317,281 + HMPREF1058_RS11680 0.20 -1.3 317,281 + HMPREF1058_RS11680 0.20 +0.3 317,290 - HMPREF1058_RS11680 0.20 -0.1 317,354 + HMPREF1058_RS11680 0.24 -1.0 317,355 - HMPREF1058_RS11680 0.24 +0.1 317,357 - HMPREF1058_RS11680 0.24 -0.1 317,503 + HMPREF1058_RS11680 0.31 -0.7 317,504 - HMPREF1058_RS11680 0.32 +0.3 317,504 - HMPREF1058_RS11680 0.32 -1.0 317,525 + HMPREF1058_RS11680 0.33 +0.5 317,526 - HMPREF1058_RS11680 0.33 +0.8 317,548 - HMPREF1058_RS11680 0.34 -0.6 317,637 + HMPREF1058_RS11680 0.39 +0.7 317,638 - HMPREF1058_RS11680 0.39 -0.2 317,638 - HMPREF1058_RS11680 0.39 +0.7 317,638 - HMPREF1058_RS11680 0.39 +0.1 317,642 - HMPREF1058_RS11680 0.39 -0.2 317,646 + HMPREF1058_RS11680 0.39 -0.7 317,646 + HMPREF1058_RS11680 0.39 +0.0 317,647 - HMPREF1058_RS11680 0.39 +0.5 317,677 - HMPREF1058_RS11680 0.41 -0.3 317,839 + HMPREF1058_RS11680 0.49 +0.1 317,996 - HMPREF1058_RS11680 0.58 +0.8 317,996 - HMPREF1058_RS11680 0.58 +0.2 318,001 + HMPREF1058_RS11680 0.58 +0.5 318,002 - HMPREF1058_RS11680 0.58 -0.5 318,002 - HMPREF1058_RS11680 0.58 -1.7 318,111 - HMPREF1058_RS11680 0.64 -0.1 318,160 - HMPREF1058_RS11680 0.66 +1.2 318,165 + HMPREF1058_RS11680 0.67 +0.8 318,183 - HMPREF1058_RS11680 0.68 +0.0 318,265 - HMPREF1058_RS11680 0.72 -1.1 318,309 + HMPREF1058_RS11680 0.74 +0.1 318,324 + HMPREF1058_RS11680 0.75 +1.5 318,324 + HMPREF1058_RS11680 0.75 +2.3 318,324 + -0.3 318,324 + HMPREF1058_RS11680 0.75 +1.0 318,373 + HMPREF1058_RS11680 0.78 +0.5 318,378 + HMPREF1058_RS11680 0.78 -0.1 318,378 + HMPREF1058_RS11680 0.78 +0.2 318,379 - HMPREF1058_RS11680 0.78 +0.8 318,410 + HMPREF1058_RS11680 0.80 -0.0 318,411 - HMPREF1058_RS11680 0.80 -0.4 318,433 - HMPREF1058_RS11680 0.81 -0.1 318,654 + +0.7 318,654 + +0.1 318,655 - -0.7 318,655 - +1.3 318,655 - +0.2 318,807 + +0.7 318,833 - -2.5 319,009 - -0.6 319,009 - +0.4 319,151 + +0.1 319,186 + -0.7 319,330 + -0.1 319,362 - +0.5 319,362 - +0.5 319,403 - -1.0 319,405 + +0.3 319,405 + +0.3 319,405 + +1.2 319,406 - -0.7 319,406 - +0.2 319,406 - +0.5 319,408 - +0.6 319,417 - +0.0 319,452 - -0.2 319,486 + +0.0 319,508 + -1.0 319,508 + -0.3 319,508 + -0.4 319,624 + HMPREF1058_RS11675 0.17 -0.1 319,646 + HMPREF1058_RS11675 0.19 -1.1 319,646 + HMPREF1058_RS11675 0.19 -0.5 319,713 + HMPREF1058_RS11675 0.24 +0.5
Or see this region's nucleotide sequence