Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10750

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10755 and HMPREF1058_RS10750 are separated by 6 nucleotidesHMPREF1058_RS10750 and HMPREF1058_RS10745 are separated by 3 nucleotides HMPREF1058_RS10755: HMPREF1058_RS10755 - alpha-galactosidase, at 571,195 to 573,270 _RS10755 HMPREF1058_RS10750: HMPREF1058_RS10750 - alpha-L-fucosidase, at 573,277 to 574,662 _RS10750 HMPREF1058_RS10745: HMPREF1058_RS10745 - sulfatase, at 574,666 to 576,102 _RS10745 Position (kb) 573 574 575Strain fitness (log2 ratio) -2 -1 0 1 2at 572.343 kb on - strand, within HMPREF1058_RS10755at 572.487 kb on - strand, within HMPREF1058_RS10755at 572.531 kb on - strand, within HMPREF1058_RS10755at 572.550 kb on + strand, within HMPREF1058_RS10755at 572.550 kb on + strand, within HMPREF1058_RS10755at 572.562 kb on - strand, within HMPREF1058_RS10755at 572.562 kb on - strand, within HMPREF1058_RS10755at 572.575 kb on - strand, within HMPREF1058_RS10755at 572.575 kb on - strand, within HMPREF1058_RS10755at 572.692 kb on - strand, within HMPREF1058_RS10755at 572.692 kb on - strand, within HMPREF1058_RS10755at 572.713 kb on + strand, within HMPREF1058_RS10755at 572.739 kb on - strand, within HMPREF1058_RS10755at 572.758 kb on + strand, within HMPREF1058_RS10755at 572.758 kb on + strand, within HMPREF1058_RS10755at 572.758 kb on + strand, within HMPREF1058_RS10755at 572.762 kb on + strand, within HMPREF1058_RS10755at 572.763 kb on - strand, within HMPREF1058_RS10755at 572.763 kb on - strand, within HMPREF1058_RS10755at 572.763 kb on - strand, within HMPREF1058_RS10755at 572.763 kb on - strand, within HMPREF1058_RS10755at 572.763 kb on - strand, within HMPREF1058_RS10755at 572.765 kb on - strand, within HMPREF1058_RS10755at 572.884 kb on - strand, within HMPREF1058_RS10755at 573.095 kb on + strandat 573.133 kb on - strandat 573.189 kb on - strandat 573.240 kb on + strandat 573.260 kb on + strandat 573.261 kb on - strandat 573.290 kb on - strandat 573.290 kb on - strandat 573.394 kb on - strandat 573.451 kb on + strand, within HMPREF1058_RS10750at 573.467 kb on - strand, within HMPREF1058_RS10750at 573.467 kb on - strand, within HMPREF1058_RS10750at 573.506 kb on + strand, within HMPREF1058_RS10750at 573.596 kb on - strand, within HMPREF1058_RS10750at 573.739 kb on - strand, within HMPREF1058_RS10750at 573.739 kb on - strand, within HMPREF1058_RS10750at 573.742 kb on - strand, within HMPREF1058_RS10750at 573.853 kb on + strand, within HMPREF1058_RS10750at 573.883 kb on - strand, within HMPREF1058_RS10750at 573.889 kb on - strand, within HMPREF1058_RS10750at 573.980 kb on - strand, within HMPREF1058_RS10750at 574.084 kb on - strand, within HMPREF1058_RS10750at 574.084 kb on - strand, within HMPREF1058_RS10750at 574.085 kb on + strand, within HMPREF1058_RS10750at 574.087 kb on + strand, within HMPREF1058_RS10750at 574.088 kb on - strand, within HMPREF1058_RS10750at 574.088 kb on - strand, within HMPREF1058_RS10750at 574.088 kb on - strand, within HMPREF1058_RS10750at 574.105 kb on - strand, within HMPREF1058_RS10750at 574.232 kb on + strand, within HMPREF1058_RS10750at 574.232 kb on + strand, within HMPREF1058_RS10750at 574.232 kb on + strand, within HMPREF1058_RS10750at 574.233 kb on - strand, within HMPREF1058_RS10750at 574.253 kb on + strand, within HMPREF1058_RS10750at 574.254 kb on - strand, within HMPREF1058_RS10750at 574.254 kb on - strand, within HMPREF1058_RS10750at 574.254 kb on - strand, within HMPREF1058_RS10750at 574.446 kb on + strand, within HMPREF1058_RS10750at 574.456 kb on + strand, within HMPREF1058_RS10750at 574.456 kb on + strand, within HMPREF1058_RS10750at 574.457 kb on - strand, within HMPREF1058_RS10750at 574.459 kb on - strand, within HMPREF1058_RS10750at 574.540 kb on + strandat 574.630 kb on - strandat 574.647 kb on + strandat 574.647 kb on + strandat 574.647 kb on + strandat 574.647 kb on + strandat 574.647 kb on + strandat 574.647 kb on + strandat 574.648 kb on - strandat 574.648 kb on - strandat 574.648 kb on - strandat 574.648 kb on - strandat 574.649 kb on + strandat 574.652 kb on - strandat 574.662 kb on + strandat 574.755 kb on + strandat 574.755 kb on + strandat 574.759 kb on + strandat 574.759 kb on + strandat 574.759 kb on + strandat 574.759 kb on + strandat 574.759 kb on + strandat 574.760 kb on - strandat 574.760 kb on - strandat 574.760 kb on - strandat 574.761 kb on + strandat 574.762 kb on - strandat 574.762 kb on - strandat 574.803 kb on + strandat 574.804 kb on - strandat 574.809 kb on + strandat 574.809 kb on + strandat 574.819 kb on - strand, within HMPREF1058_RS10745at 574.840 kb on - strand, within HMPREF1058_RS10745at 574.840 kb on - strand, within HMPREF1058_RS10745at 574.845 kb on + strand, within HMPREF1058_RS10745at 574.845 kb on + strand, within HMPREF1058_RS10745at 574.846 kb on - strand, within HMPREF1058_RS10745at 574.861 kb on + strand, within HMPREF1058_RS10745at 574.897 kb on + strand, within HMPREF1058_RS10745at 574.897 kb on + strand, within HMPREF1058_RS10745at 574.898 kb on - strand, within HMPREF1058_RS10745at 574.902 kb on - strand, within HMPREF1058_RS10745at 574.902 kb on - strand, within HMPREF1058_RS10745at 574.902 kb on - strand, within HMPREF1058_RS10745at 574.902 kb on - strand, within HMPREF1058_RS10745at 574.973 kb on - strand, within HMPREF1058_RS10745at 575.024 kb on + strand, within HMPREF1058_RS10745at 575.041 kb on + strand, within HMPREF1058_RS10745at 575.041 kb on + strand, within HMPREF1058_RS10745at 575.042 kb on - strand, within HMPREF1058_RS10745at 575.042 kb on - strand, within HMPREF1058_RS10745at 575.092 kb on - strand, within HMPREF1058_RS10745at 575.183 kb on - strand, within HMPREF1058_RS10745at 575.185 kb on + strand, within HMPREF1058_RS10745at 575.185 kb on + strand, within HMPREF1058_RS10745at 575.186 kb on - strand, within HMPREF1058_RS10745at 575.186 kb on - strand, within HMPREF1058_RS10745at 575.241 kb on + strand, within HMPREF1058_RS10745at 575.274 kb on - strand, within HMPREF1058_RS10745at 575.274 kb on - strand, within HMPREF1058_RS10745at 575.297 kb on + strand, within HMPREF1058_RS10745at 575.347 kb on + strand, within HMPREF1058_RS10745at 575.348 kb on - strand, within HMPREF1058_RS10745at 575.348 kb on - strand, within HMPREF1058_RS10745at 575.457 kb on + strand, within HMPREF1058_RS10745at 575.458 kb on - strand, within HMPREF1058_RS10745at 575.458 kb on - strand, within HMPREF1058_RS10745at 575.462 kb on - strand, within HMPREF1058_RS10745at 575.462 kb on - strand, within HMPREF1058_RS10745at 575.462 kb on - strand, within HMPREF1058_RS10745at 575.464 kb on - strand, within HMPREF1058_RS10745at 575.529 kb on - strand, within HMPREF1058_RS10745at 575.529 kb on - strand, within HMPREF1058_RS10745at 575.573 kb on - strand, within HMPREF1058_RS10745at 575.585 kb on + strand, within HMPREF1058_RS10745at 575.586 kb on - strand, within HMPREF1058_RS10745at 575.594 kb on + strand, within HMPREF1058_RS10745at 575.607 kb on - strand, within HMPREF1058_RS10745

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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572,343 - HMPREF1058_RS10755 0.55 -0.6
572,487 - HMPREF1058_RS10755 0.62 -0.0
572,531 - HMPREF1058_RS10755 0.64 +0.2
572,550 + HMPREF1058_RS10755 0.65 +0.1
572,550 + HMPREF1058_RS10755 0.65 +1.8
572,562 - HMPREF1058_RS10755 0.66 -0.4
572,562 - HMPREF1058_RS10755 0.66 +0.1
572,575 - HMPREF1058_RS10755 0.66 -0.3
572,575 - HMPREF1058_RS10755 0.66 -0.4
572,692 - HMPREF1058_RS10755 0.72 +1.0
572,692 - HMPREF1058_RS10755 0.72 -0.1
572,713 + HMPREF1058_RS10755 0.73 -0.5
572,739 - HMPREF1058_RS10755 0.74 +0.9
572,758 + HMPREF1058_RS10755 0.75 -0.6
572,758 + HMPREF1058_RS10755 0.75 -0.1
572,758 + HMPREF1058_RS10755 0.75 -0.3
572,762 + HMPREF1058_RS10755 0.75 +2.7
572,763 - HMPREF1058_RS10755 0.76 -0.0
572,763 - HMPREF1058_RS10755 0.76 -0.0
572,763 - HMPREF1058_RS10755 0.76 -0.1
572,763 - HMPREF1058_RS10755 0.76 -0.2
572,763 - HMPREF1058_RS10755 0.76 -0.2
572,765 - HMPREF1058_RS10755 0.76 +0.0
572,884 - HMPREF1058_RS10755 0.81 +0.3
573,095 + -1.1
573,133 - +0.8
573,189 - +0.0
573,240 + -0.4
573,260 + +0.0
573,261 - +0.2
573,290 - +0.0
573,290 - +0.1
573,394 - -0.5
573,451 + HMPREF1058_RS10750 0.13 -1.0
573,467 - HMPREF1058_RS10750 0.14 -0.6
573,467 - HMPREF1058_RS10750 0.14 +0.5
573,506 + HMPREF1058_RS10750 0.17 -0.0
573,596 - HMPREF1058_RS10750 0.23 -0.6
573,739 - HMPREF1058_RS10750 0.33 -0.3
573,739 - HMPREF1058_RS10750 0.33 -0.7
573,742 - HMPREF1058_RS10750 0.34 +0.1
573,853 + HMPREF1058_RS10750 0.42 -0.3
573,883 - HMPREF1058_RS10750 0.44 +0.3
573,889 - HMPREF1058_RS10750 0.44 -0.3
573,980 - HMPREF1058_RS10750 0.51 +0.5
574,084 - HMPREF1058_RS10750 0.58 -0.2
574,084 - HMPREF1058_RS10750 0.58 +1.6
574,085 + HMPREF1058_RS10750 0.58 -0.2
574,087 + HMPREF1058_RS10750 0.58 +1.2
574,088 - HMPREF1058_RS10750 0.59 +0.6
574,088 - HMPREF1058_RS10750 0.59 -0.2
574,088 - HMPREF1058_RS10750 0.59 +0.0
574,105 - HMPREF1058_RS10750 0.60 +0.3
574,232 + HMPREF1058_RS10750 0.69 +0.2
574,232 + HMPREF1058_RS10750 0.69 -0.7
574,232 + HMPREF1058_RS10750 0.69 +0.3
574,233 - HMPREF1058_RS10750 0.69 +0.3
574,253 + HMPREF1058_RS10750 0.70 -1.0
574,254 - HMPREF1058_RS10750 0.70 +0.1
574,254 - HMPREF1058_RS10750 0.70 +0.0
574,254 - HMPREF1058_RS10750 0.70 -0.2
574,446 + HMPREF1058_RS10750 0.84 -0.3
574,456 + HMPREF1058_RS10750 0.85 +0.8
574,456 + HMPREF1058_RS10750 0.85 +0.3
574,457 - HMPREF1058_RS10750 0.85 -0.5
574,459 - HMPREF1058_RS10750 0.85 -0.9
574,540 + -0.4
574,630 - -0.3
574,647 + +0.2
574,647 + +0.1
574,647 + +0.6
574,647 + -0.4
574,647 + -0.1
574,647 + +0.1
574,648 - -0.6
574,648 - -0.1
574,648 - -0.7
574,648 - +0.0
574,649 + +0.4
574,652 - +0.3
574,662 + -0.0
574,755 + -0.2
574,755 + +0.0
574,759 + +0.3
574,759 + +1.3
574,759 + -0.3
574,759 + +0.8
574,759 + +1.5
574,760 - -0.3
574,760 - -1.8
574,760 - +0.3
574,761 + +0.5
574,762 - -2.4
574,762 - +0.2
574,803 + +0.0
574,804 - +1.0
574,809 + -0.2
574,809 + +0.6
574,819 - HMPREF1058_RS10745 0.11 +0.6
574,840 - HMPREF1058_RS10745 0.12 -1.1
574,840 - HMPREF1058_RS10745 0.12 +0.7
574,845 + HMPREF1058_RS10745 0.12 +0.4
574,845 + HMPREF1058_RS10745 0.12 -0.1
574,846 - HMPREF1058_RS10745 0.13 -0.1
574,861 + HMPREF1058_RS10745 0.14 +0.5
574,897 + HMPREF1058_RS10745 0.16 -0.7
574,897 + HMPREF1058_RS10745 0.16 +0.1
574,898 - HMPREF1058_RS10745 0.16 +0.1
574,902 - HMPREF1058_RS10745 0.16 -0.3
574,902 - HMPREF1058_RS10745 0.16 +0.2
574,902 - HMPREF1058_RS10745 0.16 +0.1
574,902 - HMPREF1058_RS10745 0.16 -0.1
574,973 - HMPREF1058_RS10745 0.21 -0.5
575,024 + HMPREF1058_RS10745 0.25 +0.4
575,041 + HMPREF1058_RS10745 0.26 +0.3
575,041 + HMPREF1058_RS10745 0.26 +0.9
575,042 - HMPREF1058_RS10745 0.26 -0.4
575,042 - HMPREF1058_RS10745 0.26 -1.2
575,092 - HMPREF1058_RS10745 0.30 +0.5
575,183 - HMPREF1058_RS10745 0.36 -0.1
575,185 + HMPREF1058_RS10745 0.36 -0.6
575,185 + HMPREF1058_RS10745 0.36 +0.2
575,186 - HMPREF1058_RS10745 0.36 -0.6
575,186 - HMPREF1058_RS10745 0.36 +2.0
575,241 + HMPREF1058_RS10745 0.40 -0.6
575,274 - HMPREF1058_RS10745 0.42 -0.6
575,274 - HMPREF1058_RS10745 0.42 +0.3
575,297 + HMPREF1058_RS10745 0.44 -0.4
575,347 + HMPREF1058_RS10745 0.47 +0.4
575,348 - HMPREF1058_RS10745 0.47 +1.3
575,348 - HMPREF1058_RS10745 0.47 -0.7
575,457 + HMPREF1058_RS10745 0.55 -0.7
575,458 - HMPREF1058_RS10745 0.55 -1.4
575,458 - HMPREF1058_RS10745 0.55 -0.8
575,462 - HMPREF1058_RS10745 0.55 -0.3
575,462 - HMPREF1058_RS10745 0.55 +1.0
575,462 - HMPREF1058_RS10745 0.55 +0.1
575,464 - HMPREF1058_RS10745 0.56 -0.2
575,529 - HMPREF1058_RS10745 0.60 -0.9
575,529 - HMPREF1058_RS10745 0.60 +0.5
575,573 - HMPREF1058_RS10745 0.63 +0.4
575,585 + HMPREF1058_RS10745 0.64 +1.0
575,586 - HMPREF1058_RS10745 0.64 -1.4
575,594 + HMPREF1058_RS10745 0.65 -0.3
575,607 - HMPREF1058_RS10745 0.65 -0.2

Or see this region's nucleotide sequence