Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07000 and HMPREF1058_RS06995 are separated by 124 nucleotides HMPREF1058_RS06995 and HMPREF1058_RS06990 are separated by 18 nucleotides
HMPREF1058_RS07000: HMPREF1058_RS07000 - DNA/RNA non-specific endonuclease, at 338,405 to 339,262
_RS07000
HMPREF1058_RS06995: HMPREF1058_RS06995 - alpha-L-fucosidase, at 339,387 to 340,736
_RS06995
HMPREF1058_RS06990: HMPREF1058_RS06990 - family 10 glycosylhydrolase, at 340,755 to 342,794
_RS06990
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.516 kb on - strand, within HMPREF1058_RS07000 at 338.533 kb on + strand, within HMPREF1058_RS07000 at 338.558 kb on - strand, within HMPREF1058_RS07000 at 338.659 kb on + strand, within HMPREF1058_RS07000 at 338.667 kb on + strand, within HMPREF1058_RS07000 at 338.667 kb on + strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.688 kb on + strand, within HMPREF1058_RS07000 at 338.689 kb on - strand, within HMPREF1058_RS07000 at 338.789 kb on - strand, within HMPREF1058_RS07000 at 338.790 kb on + strand, within HMPREF1058_RS07000 at 338.791 kb on - strand, within HMPREF1058_RS07000 at 338.873 kb on - strand, within HMPREF1058_RS07000 at 338.885 kb on - strand, within HMPREF1058_RS07000 at 338.887 kb on - strand, within HMPREF1058_RS07000 at 338.887 kb on - strand, within HMPREF1058_RS07000 at 338.904 kb on - strand, within HMPREF1058_RS07000 at 338.904 kb on - strand, within HMPREF1058_RS07000 at 339.008 kb on - strand, within HMPREF1058_RS07000 at 339.009 kb on + strand, within HMPREF1058_RS07000 at 339.019 kb on + strand, within HMPREF1058_RS07000 at 339.020 kb on - strand, within HMPREF1058_RS07000 at 339.053 kb on - strand at 339.063 kb on - strand, within HMPREF1058_RS07000 at 339.181 kb on + strand at 339.182 kb on - strand at 339.184 kb on - strand at 339.203 kb on + strand at 339.204 kb on - strand at 339.295 kb on + strand at 339.326 kb on + strand at 339.327 kb on - strand at 339.328 kb on + strand at 339.346 kb on + strand at 339.356 kb on - strand at 339.382 kb on + strand at 339.384 kb on + strand at 339.385 kb on - strand at 339.385 kb on - strand at 339.459 kb on - strand at 339.459 kb on - strand at 339.528 kb on - strand, within HMPREF1058_RS06995 at 339.550 kb on - strand, within HMPREF1058_RS06995 at 339.595 kb on - strand, within HMPREF1058_RS06995 at 339.603 kb on + strand, within HMPREF1058_RS06995 at 339.612 kb on + strand, within HMPREF1058_RS06995 at 339.649 kb on - strand at 339.697 kb on - strand, within HMPREF1058_RS06995 at 339.698 kb on + strand, within HMPREF1058_RS06995 at 339.706 kb on + strand, within HMPREF1058_RS06995 at 339.707 kb on - strand, within HMPREF1058_RS06995 at 339.759 kb on - strand, within HMPREF1058_RS06995 at 339.821 kb on - strand, within HMPREF1058_RS06995 at 339.850 kb on - strand, within HMPREF1058_RS06995 at 339.850 kb on - strand, within HMPREF1058_RS06995 at 339.908 kb on - strand, within HMPREF1058_RS06995 at 339.914 kb on + strand, within HMPREF1058_RS06995 at 339.915 kb on - strand, within HMPREF1058_RS06995 at 340.061 kb on - strand, within HMPREF1058_RS06995 at 340.131 kb on - strand, within HMPREF1058_RS06995 at 340.173 kb on + strand, within HMPREF1058_RS06995 at 340.173 kb on + strand, within HMPREF1058_RS06995 at 340.233 kb on + strand, within HMPREF1058_RS06995 at 340.235 kb on + strand, within HMPREF1058_RS06995 at 340.245 kb on + strand, within HMPREF1058_RS06995 at 340.245 kb on + strand, within HMPREF1058_RS06995 at 340.246 kb on - strand, within HMPREF1058_RS06995 at 340.247 kb on + strand, within HMPREF1058_RS06995 at 340.440 kb on + strand, within HMPREF1058_RS06995 at 340.440 kb on + strand, within HMPREF1058_RS06995 at 340.442 kb on + strand, within HMPREF1058_RS06995 at 340.442 kb on + strand, within HMPREF1058_RS06995 at 340.442 kb on + strand, within HMPREF1058_RS06995 at 340.442 kb on + strand, within HMPREF1058_RS06995 at 340.454 kb on + strand, within HMPREF1058_RS06995 at 340.455 kb on - strand, within HMPREF1058_RS06995 at 340.478 kb on - strand, within HMPREF1058_RS06995 at 340.514 kb on - strand, within HMPREF1058_RS06995 at 340.541 kb on + strand, within HMPREF1058_RS06995 at 340.541 kb on + strand, within HMPREF1058_RS06995 at 340.542 kb on - strand, within HMPREF1058_RS06995 at 340.542 kb on - strand, within HMPREF1058_RS06995 at 340.565 kb on + strand, within HMPREF1058_RS06995 at 340.566 kb on - strand, within HMPREF1058_RS06995 at 340.566 kb on - strand, within HMPREF1058_RS06995 at 340.566 kb on - strand, within HMPREF1058_RS06995 at 340.633 kb on + strand at 340.634 kb on - strand at 340.662 kb on - strand at 340.727 kb on + strand at 340.727 kb on + strand at 340.770 kb on + strand at 340.830 kb on + strand at 340.860 kb on + strand at 340.860 kb on + strand at 340.860 kb on + strand at 340.861 kb on - strand at 340.861 kb on - strand at 340.864 kb on + strand at 340.865 kb on - strand at 340.957 kb on + strand at 340.986 kb on + strand, within HMPREF1058_RS06990 at 341.022 kb on + strand, within HMPREF1058_RS06990 at 341.023 kb on - strand, within HMPREF1058_RS06990 at 341.026 kb on + strand, within HMPREF1058_RS06990 at 341.027 kb on - strand, within HMPREF1058_RS06990 at 341.028 kb on + strand, within HMPREF1058_RS06990 at 341.084 kb on + strand, within HMPREF1058_RS06990 at 341.094 kb on + strand, within HMPREF1058_RS06990 at 341.094 kb on + strand, within HMPREF1058_RS06990 at 341.149 kb on - strand, within HMPREF1058_RS06990 at 341.149 kb on - strand, within HMPREF1058_RS06990 at 341.280 kb on - strand, within HMPREF1058_RS06990 at 341.301 kb on - strand, within HMPREF1058_RS06990 at 341.307 kb on - strand, within HMPREF1058_RS06990 at 341.310 kb on + strand, within HMPREF1058_RS06990 at 341.311 kb on - strand, within HMPREF1058_RS06990 at 341.513 kb on - strand, within HMPREF1058_RS06990 at 341.557 kb on - strand, within HMPREF1058_RS06990 at 341.613 kb on + strand, within HMPREF1058_RS06990 at 341.614 kb on - strand, within HMPREF1058_RS06990 at 341.615 kb on + strand, within HMPREF1058_RS06990 at 341.618 kb on + strand, within HMPREF1058_RS06990 at 341.734 kb on + strand, within HMPREF1058_RS06990 at 341.735 kb on - strand, within HMPREF1058_RS06990
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 338,516 - HMPREF1058_RS07000 0.13 -0.1 338,533 + HMPREF1058_RS07000 0.15 -1.6 338,558 - HMPREF1058_RS07000 0.18 +0.7 338,659 + HMPREF1058_RS07000 0.30 -0.3 338,667 + HMPREF1058_RS07000 0.31 +0.6 338,667 + HMPREF1058_RS07000 0.31 -0.5 338,668 - HMPREF1058_RS07000 0.31 +0.3 338,668 - HMPREF1058_RS07000 0.31 -0.1 338,668 - HMPREF1058_RS07000 0.31 +0.2 338,669 + HMPREF1058_RS07000 0.31 -0.2 338,669 + HMPREF1058_RS07000 0.31 +0.2 338,669 + HMPREF1058_RS07000 0.31 +0.1 338,670 - HMPREF1058_RS07000 0.31 +0.6 338,670 - HMPREF1058_RS07000 0.31 -0.7 338,670 - HMPREF1058_RS07000 0.31 -0.1 338,688 + HMPREF1058_RS07000 0.33 -0.3 338,689 - HMPREF1058_RS07000 0.33 -0.4 338,789 - HMPREF1058_RS07000 0.45 -0.7 338,790 + HMPREF1058_RS07000 0.45 +0.2 338,791 - HMPREF1058_RS07000 0.45 -0.4 338,873 - HMPREF1058_RS07000 0.55 +0.2 338,885 - HMPREF1058_RS07000 0.56 -0.3 338,887 - HMPREF1058_RS07000 0.56 +0.1 338,887 - HMPREF1058_RS07000 0.56 -0.4 338,904 - HMPREF1058_RS07000 0.58 +0.3 338,904 - HMPREF1058_RS07000 0.58 +0.2 339,008 - HMPREF1058_RS07000 0.70 +0.3 339,009 + HMPREF1058_RS07000 0.70 +0.3 339,019 + HMPREF1058_RS07000 0.72 +0.9 339,020 - HMPREF1058_RS07000 0.72 -0.9 339,053 - -0.4 339,063 - HMPREF1058_RS07000 0.77 +0.4 339,181 + +0.3 339,182 - -1.2 339,184 - +0.0 339,203 + +0.7 339,204 - +0.4 339,295 + -0.7 339,326 + +0.0 339,327 - +0.9 339,328 + +0.9 339,346 + -0.7 339,356 - -0.5 339,382 + -0.7 339,384 + +1.2 339,385 - -0.6 339,385 - -0.2 339,459 - -0.2 339,459 - -2.3 339,528 - HMPREF1058_RS06995 0.10 -0.3 339,550 - HMPREF1058_RS06995 0.12 -1.2 339,595 - HMPREF1058_RS06995 0.15 +1.2 339,603 + HMPREF1058_RS06995 0.16 -0.4 339,612 + HMPREF1058_RS06995 0.17 +0.9 339,649 - -0.1 339,697 - HMPREF1058_RS06995 0.23 -1.8 339,698 + HMPREF1058_RS06995 0.23 +0.8 339,706 + HMPREF1058_RS06995 0.24 -0.2 339,707 - HMPREF1058_RS06995 0.24 +1.1 339,759 - HMPREF1058_RS06995 0.28 -0.4 339,821 - HMPREF1058_RS06995 0.32 +0.3 339,850 - HMPREF1058_RS06995 0.34 -0.5 339,850 - HMPREF1058_RS06995 0.34 -0.3 339,908 - HMPREF1058_RS06995 0.39 +0.7 339,914 + HMPREF1058_RS06995 0.39 -0.6 339,915 - HMPREF1058_RS06995 0.39 -0.5 340,061 - HMPREF1058_RS06995 0.50 +0.2 340,131 - HMPREF1058_RS06995 0.55 +1.0 340,173 + HMPREF1058_RS06995 0.58 +0.9 340,173 + HMPREF1058_RS06995 0.58 -0.4 340,233 + HMPREF1058_RS06995 0.63 -0.4 340,235 + HMPREF1058_RS06995 0.63 -0.0 340,245 + HMPREF1058_RS06995 0.64 -0.2 340,245 + HMPREF1058_RS06995 0.64 +0.2 340,246 - HMPREF1058_RS06995 0.64 -0.4 340,247 + HMPREF1058_RS06995 0.64 -0.7 340,440 + HMPREF1058_RS06995 0.78 +1.2 340,440 + HMPREF1058_RS06995 0.78 -0.5 340,442 + HMPREF1058_RS06995 0.78 -0.3 340,442 + HMPREF1058_RS06995 0.78 -0.9 340,442 + HMPREF1058_RS06995 0.78 -0.2 340,442 + HMPREF1058_RS06995 0.78 -0.0 340,454 + HMPREF1058_RS06995 0.79 +0.5 340,455 - HMPREF1058_RS06995 0.79 -0.5 340,478 - HMPREF1058_RS06995 0.81 +0.0 340,514 - HMPREF1058_RS06995 0.83 -2.5 340,541 + HMPREF1058_RS06995 0.85 -0.2 340,541 + HMPREF1058_RS06995 0.85 -0.4 340,542 - HMPREF1058_RS06995 0.86 -0.6 340,542 - HMPREF1058_RS06995 0.86 +0.1 340,565 + HMPREF1058_RS06995 0.87 -0.4 340,566 - HMPREF1058_RS06995 0.87 -0.5 340,566 - HMPREF1058_RS06995 0.87 -1.3 340,566 - HMPREF1058_RS06995 0.87 -1.0 340,633 + +0.9 340,634 - +0.9 340,662 - +0.5 340,727 + +0.3 340,727 + -0.9 340,770 + -0.3 340,830 + -0.1 340,860 + +0.6 340,860 + -0.5 340,860 + +1.2 340,861 - +0.6 340,861 - +0.3 340,864 + -1.1 340,865 - -0.2 340,957 + -1.1 340,986 + HMPREF1058_RS06990 0.11 +0.1 341,022 + HMPREF1058_RS06990 0.13 -0.6 341,023 - HMPREF1058_RS06990 0.13 -0.2 341,026 + HMPREF1058_RS06990 0.13 -0.4 341,027 - HMPREF1058_RS06990 0.13 -0.5 341,028 + HMPREF1058_RS06990 0.13 +0.2 341,084 + HMPREF1058_RS06990 0.16 -0.0 341,094 + HMPREF1058_RS06990 0.17 +1.9 341,094 + HMPREF1058_RS06990 0.17 -1.7 341,149 - HMPREF1058_RS06990 0.19 -0.6 341,149 - HMPREF1058_RS06990 0.19 +1.3 341,280 - HMPREF1058_RS06990 0.26 -2.4 341,301 - HMPREF1058_RS06990 0.27 +0.2 341,307 - HMPREF1058_RS06990 0.27 -0.6 341,310 + HMPREF1058_RS06990 0.27 -0.0 341,311 - HMPREF1058_RS06990 0.27 +0.1 341,513 - HMPREF1058_RS06990 0.37 +0.3 341,557 - HMPREF1058_RS06990 0.39 +1.3 341,613 + HMPREF1058_RS06990 0.42 -1.0 341,614 - HMPREF1058_RS06990 0.42 +0.2 341,615 + HMPREF1058_RS06990 0.42 +0.7 341,618 + HMPREF1058_RS06990 0.42 +0.2 341,734 + HMPREF1058_RS06990 0.48 +0.0 341,735 - HMPREF1058_RS06990 0.48 +0.3
Or see this region's nucleotide sequence