Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00185

Experiment: D-Arabinose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS00190 and HMPREF1058_RS00185 are separated by 82 nucleotidesHMPREF1058_RS00185 and HMPREF1058_RS00180 are separated by 76 nucleotides HMPREF1058_RS00190: HMPREF1058_RS00190 - FimB/Mfa2 family fimbrial subunit, at 36,210 to 37,163 _RS00190 HMPREF1058_RS00185: HMPREF1058_RS00185 - iron-containing alcohol dehydrogenase, at 37,246 to 38,640 _RS00185 HMPREF1058_RS00180: HMPREF1058_RS00180 - GntR family transcriptional regulator, at 38,717 to 39,550 _RS00180 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2 3at 36.295 kb on - strandat 36.295 kb on - strandat 36.305 kb on + strandat 36.347 kb on + strand, within HMPREF1058_RS00190at 36.373 kb on - strand, within HMPREF1058_RS00190at 36.387 kb on + strand, within HMPREF1058_RS00190at 36.410 kb on + strand, within HMPREF1058_RS00190at 36.560 kb on - strand, within HMPREF1058_RS00190at 36.645 kb on - strand, within HMPREF1058_RS00190at 36.678 kb on + strand, within HMPREF1058_RS00190at 36.679 kb on - strand, within HMPREF1058_RS00190at 36.679 kb on - strand, within HMPREF1058_RS00190at 36.696 kb on + strand, within HMPREF1058_RS00190at 36.696 kb on + strandat 36.697 kb on - strand, within HMPREF1058_RS00190at 36.705 kb on - strand, within HMPREF1058_RS00190at 36.708 kb on + strand, within HMPREF1058_RS00190at 36.718 kb on + strand, within HMPREF1058_RS00190at 36.719 kb on - strand, within HMPREF1058_RS00190at 36.719 kb on - strand, within HMPREF1058_RS00190at 36.779 kb on + strand, within HMPREF1058_RS00190at 36.780 kb on - strand, within HMPREF1058_RS00190at 36.803 kb on - strand, within HMPREF1058_RS00190at 36.847 kb on - strand, within HMPREF1058_RS00190at 36.856 kb on + strand, within HMPREF1058_RS00190at 36.856 kb on + strand, within HMPREF1058_RS00190at 36.856 kb on + strand, within HMPREF1058_RS00190at 36.857 kb on - strand, within HMPREF1058_RS00190at 36.857 kb on - strand, within HMPREF1058_RS00190at 36.861 kb on - strand, within HMPREF1058_RS00190at 36.861 kb on - strand, within HMPREF1058_RS00190at 36.861 kb on - strand, within HMPREF1058_RS00190at 36.864 kb on + strand, within HMPREF1058_RS00190at 36.915 kb on + strand, within HMPREF1058_RS00190at 36.919 kb on + strand, within HMPREF1058_RS00190at 36.920 kb on - strand, within HMPREF1058_RS00190at 36.920 kb on - strand, within HMPREF1058_RS00190at 36.923 kb on - strand, within HMPREF1058_RS00190at 36.923 kb on - strand, within HMPREF1058_RS00190at 36.966 kb on + strand, within HMPREF1058_RS00190at 36.968 kb on + strand, within HMPREF1058_RS00190at 36.968 kb on + strand, within HMPREF1058_RS00190at 36.971 kb on - strand, within HMPREF1058_RS00190at 36.999 kb on + strand, within HMPREF1058_RS00190at 37.000 kb on - strand, within HMPREF1058_RS00190at 37.005 kb on + strand, within HMPREF1058_RS00190at 37.053 kb on + strand, within HMPREF1058_RS00190at 37.174 kb on - strandat 37.359 kb on + strandat 37.361 kb on + strandat 37.385 kb on - strandat 37.385 kb on - strandat 37.411 kb on + strand, within HMPREF1058_RS00185at 37.479 kb on + strand, within HMPREF1058_RS00185at 37.615 kb on + strand, within HMPREF1058_RS00185at 37.697 kb on - strand, within HMPREF1058_RS00185at 37.744 kb on + strand, within HMPREF1058_RS00185at 37.748 kb on - strand, within HMPREF1058_RS00185at 37.894 kb on - strand, within HMPREF1058_RS00185at 37.926 kb on + strand, within HMPREF1058_RS00185at 37.926 kb on + strand, within HMPREF1058_RS00185at 37.926 kb on + strand, within HMPREF1058_RS00185at 37.926 kb on + strand, within HMPREF1058_RS00185at 37.927 kb on - strand, within HMPREF1058_RS00185at 37.992 kb on + strand, within HMPREF1058_RS00185at 37.992 kb on + strand, within HMPREF1058_RS00185at 38.027 kb on + strand, within HMPREF1058_RS00185at 38.028 kb on - strand, within HMPREF1058_RS00185at 38.028 kb on - strand, within HMPREF1058_RS00185at 38.051 kb on + strand, within HMPREF1058_RS00185at 38.052 kb on - strand, within HMPREF1058_RS00185at 38.200 kb on + strand, within HMPREF1058_RS00185at 38.365 kb on + strand, within HMPREF1058_RS00185at 38.424 kb on + strand, within HMPREF1058_RS00185at 38.424 kb on + strand, within HMPREF1058_RS00185at 38.428 kb on + strand, within HMPREF1058_RS00185at 38.428 kb on + strand, within HMPREF1058_RS00185at 38.429 kb on - strand, within HMPREF1058_RS00185at 38.491 kb on + strand, within HMPREF1058_RS00185at 38.501 kb on + strandat 38.546 kb on - strandat 38.645 kb on - strandat 38.645 kb on - strandat 38.645 kb on - strandat 38.645 kb on - strandat 38.667 kb on - strandat 38.679 kb on + strandat 38.716 kb on - strandat 38.738 kb on + strandat 38.784 kb on + strandat 38.829 kb on + strand, within HMPREF1058_RS00180at 38.842 kb on + strand, within HMPREF1058_RS00180at 39.013 kb on - strand, within HMPREF1058_RS00180at 39.059 kb on - strand, within HMPREF1058_RS00180at 39.061 kb on - strand, within HMPREF1058_RS00180at 39.063 kb on + strand, within HMPREF1058_RS00180at 39.063 kb on + strand, within HMPREF1058_RS00180at 39.064 kb on - strand, within HMPREF1058_RS00180at 39.073 kb on + strand, within HMPREF1058_RS00180at 39.073 kb on + strand, within HMPREF1058_RS00180at 39.073 kb on + strand, within HMPREF1058_RS00180at 39.076 kb on - strand, within HMPREF1058_RS00180at 39.076 kb on - strand, within HMPREF1058_RS00180at 39.086 kb on - strand, within HMPREF1058_RS00180at 39.086 kb on - strand, within HMPREF1058_RS00180at 39.086 kb on - strand, within HMPREF1058_RS00180at 39.220 kb on + strand, within HMPREF1058_RS00180at 39.265 kb on - strandat 39.290 kb on + strand, within HMPREF1058_RS00180at 39.291 kb on - strand, within HMPREF1058_RS00180at 39.294 kb on + strand, within HMPREF1058_RS00180at 39.294 kb on + strand, within HMPREF1058_RS00180at 39.294 kb on + strand, within HMPREF1058_RS00180at 39.316 kb on + strand, within HMPREF1058_RS00180at 39.317 kb on - strand, within HMPREF1058_RS00180at 39.317 kb on - strand, within HMPREF1058_RS00180at 39.386 kb on + strand, within HMPREF1058_RS00180at 39.389 kb on - strand, within HMPREF1058_RS00180at 39.446 kb on + strand, within HMPREF1058_RS00180at 39.446 kb on + strand, within HMPREF1058_RS00180at 39.446 kb on + strand, within HMPREF1058_RS00180at 39.447 kb on - strand, within HMPREF1058_RS00180at 39.498 kb on + strandat 39.499 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
remove
36,295 - +0.4
36,295 - -0.5
36,305 + -1.2
36,347 + HMPREF1058_RS00190 0.14 -0.5
36,373 - HMPREF1058_RS00190 0.17 -0.2
36,387 + HMPREF1058_RS00190 0.19 +0.2
36,410 + HMPREF1058_RS00190 0.21 -0.0
36,560 - HMPREF1058_RS00190 0.37 -0.3
36,645 - HMPREF1058_RS00190 0.46 -0.1
36,678 + HMPREF1058_RS00190 0.49 -0.6
36,679 - HMPREF1058_RS00190 0.49 -0.1
36,679 - HMPREF1058_RS00190 0.49 -0.4
36,696 + HMPREF1058_RS00190 0.51 +0.0
36,696 + +1.6
36,697 - HMPREF1058_RS00190 0.51 +0.5
36,705 - HMPREF1058_RS00190 0.52 -0.8
36,708 + HMPREF1058_RS00190 0.52 +0.0
36,718 + HMPREF1058_RS00190 0.53 -0.4
36,719 - HMPREF1058_RS00190 0.53 +0.8
36,719 - HMPREF1058_RS00190 0.53 +0.6
36,779 + HMPREF1058_RS00190 0.60 -0.5
36,780 - HMPREF1058_RS00190 0.60 +0.9
36,803 - HMPREF1058_RS00190 0.62 +2.8
36,847 - HMPREF1058_RS00190 0.67 -0.2
36,856 + HMPREF1058_RS00190 0.68 -0.9
36,856 + HMPREF1058_RS00190 0.68 -0.0
36,856 + HMPREF1058_RS00190 0.68 +1.8
36,857 - HMPREF1058_RS00190 0.68 +0.7
36,857 - HMPREF1058_RS00190 0.68 -0.0
36,861 - HMPREF1058_RS00190 0.68 -0.0
36,861 - HMPREF1058_RS00190 0.68 -0.7
36,861 - HMPREF1058_RS00190 0.68 -0.8
36,864 + HMPREF1058_RS00190 0.69 -0.2
36,915 + HMPREF1058_RS00190 0.74 +0.3
36,919 + HMPREF1058_RS00190 0.74 +0.1
36,920 - HMPREF1058_RS00190 0.74 -0.2
36,920 - HMPREF1058_RS00190 0.74 +0.4
36,923 - HMPREF1058_RS00190 0.75 +0.2
36,923 - HMPREF1058_RS00190 0.75 -0.0
36,966 + HMPREF1058_RS00190 0.79 +0.2
36,968 + HMPREF1058_RS00190 0.79 -0.4
36,968 + HMPREF1058_RS00190 0.79 +2.0
36,971 - HMPREF1058_RS00190 0.80 -0.0
36,999 + HMPREF1058_RS00190 0.83 +0.8
37,000 - HMPREF1058_RS00190 0.83 +2.0
37,005 + HMPREF1058_RS00190 0.83 +0.8
37,053 + HMPREF1058_RS00190 0.88 -0.1
37,174 - +0.4
37,359 + +0.2
37,361 + -0.7
37,385 - -0.4
37,385 - +0.1
37,411 + HMPREF1058_RS00185 0.12 +0.6
37,479 + HMPREF1058_RS00185 0.17 +0.7
37,615 + HMPREF1058_RS00185 0.26 -0.9
37,697 - HMPREF1058_RS00185 0.32 -0.1
37,744 + HMPREF1058_RS00185 0.36 -0.7
37,748 - HMPREF1058_RS00185 0.36 +0.2
37,894 - HMPREF1058_RS00185 0.46 -0.5
37,926 + HMPREF1058_RS00185 0.49 +0.5
37,926 + HMPREF1058_RS00185 0.49 -1.4
37,926 + HMPREF1058_RS00185 0.49 -0.4
37,926 + HMPREF1058_RS00185 0.49 +0.4
37,927 - HMPREF1058_RS00185 0.49 +0.0
37,992 + HMPREF1058_RS00185 0.53 -0.3
37,992 + HMPREF1058_RS00185 0.53 -0.3
38,027 + HMPREF1058_RS00185 0.56 +0.3
38,028 - HMPREF1058_RS00185 0.56 -1.0
38,028 - HMPREF1058_RS00185 0.56 +0.7
38,051 + HMPREF1058_RS00185 0.58 -1.6
38,052 - HMPREF1058_RS00185 0.58 -1.0
38,200 + HMPREF1058_RS00185 0.68 -0.2
38,365 + HMPREF1058_RS00185 0.80 +0.3
38,424 + HMPREF1058_RS00185 0.84 -1.3
38,424 + HMPREF1058_RS00185 0.84 +1.2
38,428 + HMPREF1058_RS00185 0.85 +0.3
38,428 + HMPREF1058_RS00185 0.85 -0.4
38,429 - HMPREF1058_RS00185 0.85 +0.7
38,491 + HMPREF1058_RS00185 0.89 +0.6
38,501 + +0.7
38,546 - -0.3
38,645 - -0.2
38,645 - +0.6
38,645 - -0.1
38,645 - -0.5
38,667 - -0.9
38,679 + -0.5
38,716 - +0.4
38,738 + -0.6
38,784 + +0.5
38,829 + HMPREF1058_RS00180 0.13 -1.1
38,842 + HMPREF1058_RS00180 0.15 +1.4
39,013 - HMPREF1058_RS00180 0.35 +0.2
39,059 - HMPREF1058_RS00180 0.41 -0.8
39,061 - HMPREF1058_RS00180 0.41 +2.0
39,063 + HMPREF1058_RS00180 0.41 -0.8
39,063 + HMPREF1058_RS00180 0.41 +0.0
39,064 - HMPREF1058_RS00180 0.42 +0.4
39,073 + HMPREF1058_RS00180 0.43 -0.4
39,073 + HMPREF1058_RS00180 0.43 +0.3
39,073 + HMPREF1058_RS00180 0.43 +0.2
39,076 - HMPREF1058_RS00180 0.43 -1.7
39,076 - HMPREF1058_RS00180 0.43 +0.4
39,086 - HMPREF1058_RS00180 0.44 -0.4
39,086 - HMPREF1058_RS00180 0.44 +0.1
39,086 - HMPREF1058_RS00180 0.44 -0.5
39,220 + HMPREF1058_RS00180 0.60 +0.1
39,265 - -1.8
39,290 + HMPREF1058_RS00180 0.69 -0.9
39,291 - HMPREF1058_RS00180 0.69 +0.4
39,294 + HMPREF1058_RS00180 0.69 -2.0
39,294 + HMPREF1058_RS00180 0.69 +0.2
39,294 + HMPREF1058_RS00180 0.69 +1.3
39,316 + HMPREF1058_RS00180 0.72 -0.2
39,317 - HMPREF1058_RS00180 0.72 +0.7
39,317 - HMPREF1058_RS00180 0.72 +0.6
39,386 + HMPREF1058_RS00180 0.80 -0.0
39,389 - HMPREF1058_RS00180 0.81 -0.2
39,446 + HMPREF1058_RS00180 0.87 +0.2
39,446 + HMPREF1058_RS00180 0.87 -0.4
39,446 + HMPREF1058_RS00180 0.87 +0.5
39,447 - HMPREF1058_RS00180 0.88 -0.8
39,498 + +0.4
39,499 - +0.4

Or see this region's nucleotide sequence