Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17780 and HMPREF1058_RS17775 are separated by 10 nucleotides HMPREF1058_RS17775 and HMPREF1058_RS17770 are separated by 221 nucleotides
HMPREF1058_RS17780: HMPREF1058_RS17780 - clostripain, at 336,703 to 337,965
_RS17780
HMPREF1058_RS17775: HMPREF1058_RS17775 - hypothetical protein, at 337,976 to 338,371
_RS17775
HMPREF1058_RS17770: HMPREF1058_RS17770 - RNA polymerase sigma factor RpoD/SigA, at 338,593 to 339,453
_RS17770
Position (kb) 337
338
339 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 336.980 kb on + strand, within HMPREF1058_RS17780 at 337.145 kb on + strand, within HMPREF1058_RS17780 at 337.145 kb on + strand, within HMPREF1058_RS17780 at 337.145 kb on + strand, within HMPREF1058_RS17780 at 337.145 kb on + strand, within HMPREF1058_RS17780 at 337.146 kb on - strand, within HMPREF1058_RS17780 at 337.146 kb on - strand, within HMPREF1058_RS17780 at 337.163 kb on + strand, within HMPREF1058_RS17780 at 337.209 kb on - strand, within HMPREF1058_RS17780 at 337.254 kb on + strand, within HMPREF1058_RS17780 at 337.277 kb on + strand, within HMPREF1058_RS17780 at 337.302 kb on - strand, within HMPREF1058_RS17780 at 337.305 kb on - strand, within HMPREF1058_RS17780 at 337.327 kb on - strand, within HMPREF1058_RS17780 at 337.327 kb on - strand, within HMPREF1058_RS17780 at 337.367 kb on - strand, within HMPREF1058_RS17780 at 337.441 kb on - strand, within HMPREF1058_RS17780 at 337.496 kb on - strand, within HMPREF1058_RS17780 at 337.531 kb on - strand, within HMPREF1058_RS17780 at 337.623 kb on + strand, within HMPREF1058_RS17780 at 337.623 kb on + strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.630 kb on - strand, within HMPREF1058_RS17780 at 337.654 kb on + strand, within HMPREF1058_RS17780 at 337.655 kb on - strand, within HMPREF1058_RS17780 at 337.666 kb on - strand, within HMPREF1058_RS17780 at 337.699 kb on + strand, within HMPREF1058_RS17780 at 337.703 kb on + strand, within HMPREF1058_RS17780 at 337.704 kb on - strand, within HMPREF1058_RS17780 at 337.760 kb on - strand, within HMPREF1058_RS17780 at 337.816 kb on - strand, within HMPREF1058_RS17780 at 338.166 kb on + strand, within HMPREF1058_RS17775 at 338.197 kb on + strand, within HMPREF1058_RS17775 at 338.198 kb on - strand, within HMPREF1058_RS17775 at 338.279 kb on + strand, within HMPREF1058_RS17775 at 338.282 kb on + strand, within HMPREF1058_RS17775 at 338.282 kb on + strand, within HMPREF1058_RS17775 at 338.284 kb on + strand, within HMPREF1058_RS17775 at 338.285 kb on - strand, within HMPREF1058_RS17775 at 338.286 kb on + strand, within HMPREF1058_RS17775 at 338.287 kb on - strand, within HMPREF1058_RS17775 at 338.325 kb on - strand, within HMPREF1058_RS17775 at 338.371 kb on + strand at 338.372 kb on - strand at 338.377 kb on + strand at 338.386 kb on - strand at 338.411 kb on + strand at 338.416 kb on - strand at 338.447 kb on + strand at 338.448 kb on - strand at 338.456 kb on + strand at 338.490 kb on + strand at 338.516 kb on - strand at 338.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 336,980 + HMPREF1058_RS17780 0.22 -0.7 337,145 + HMPREF1058_RS17780 0.35 -0.6 337,145 + HMPREF1058_RS17780 0.35 +0.4 337,145 + HMPREF1058_RS17780 0.35 -2.9 337,145 + HMPREF1058_RS17780 0.35 -3.1 337,146 - HMPREF1058_RS17780 0.35 -1.4 337,146 - HMPREF1058_RS17780 0.35 -2.2 337,163 + HMPREF1058_RS17780 0.36 -0.9 337,209 - HMPREF1058_RS17780 0.40 +0.4 337,254 + HMPREF1058_RS17780 0.44 -0.3 337,277 + HMPREF1058_RS17780 0.45 -1.0 337,302 - HMPREF1058_RS17780 0.47 -2.4 337,305 - HMPREF1058_RS17780 0.48 -0.7 337,327 - HMPREF1058_RS17780 0.49 -2.1 337,327 - HMPREF1058_RS17780 0.49 +0.2 337,367 - HMPREF1058_RS17780 0.53 -0.5 337,441 - HMPREF1058_RS17780 0.58 -1.2 337,496 - HMPREF1058_RS17780 0.63 -1.6 337,531 - HMPREF1058_RS17780 0.66 -3.0 337,623 + HMPREF1058_RS17780 0.73 -1.3 337,623 + HMPREF1058_RS17780 0.73 -2.0 337,624 - HMPREF1058_RS17780 0.73 +0.4 337,624 - HMPREF1058_RS17780 0.73 -0.8 337,624 - HMPREF1058_RS17780 0.73 -1.1 337,624 - HMPREF1058_RS17780 0.73 -2.1 337,624 - HMPREF1058_RS17780 0.73 -2.2 337,630 - HMPREF1058_RS17780 0.73 -2.3 337,654 + HMPREF1058_RS17780 0.75 +0.1 337,655 - HMPREF1058_RS17780 0.75 -0.9 337,666 - HMPREF1058_RS17780 0.76 -1.0 337,699 + HMPREF1058_RS17780 0.79 -1.2 337,703 + HMPREF1058_RS17780 0.79 -3.1 337,704 - HMPREF1058_RS17780 0.79 -1.7 337,760 - HMPREF1058_RS17780 0.84 -3.4 337,816 - HMPREF1058_RS17780 0.88 -0.8 338,166 + HMPREF1058_RS17775 0.48 -4.2 338,197 + HMPREF1058_RS17775 0.56 -2.3 338,198 - HMPREF1058_RS17775 0.56 -3.8 338,279 + HMPREF1058_RS17775 0.77 -1.8 338,282 + HMPREF1058_RS17775 0.77 -1.8 338,282 + HMPREF1058_RS17775 0.77 -1.6 338,284 + HMPREF1058_RS17775 0.78 -1.1 338,285 - HMPREF1058_RS17775 0.78 -2.4 338,286 + HMPREF1058_RS17775 0.78 -3.5 338,287 - HMPREF1058_RS17775 0.79 -3.0 338,325 - HMPREF1058_RS17775 0.88 -3.4 338,371 + -1.5 338,372 - -2.3 338,377 + -2.0 338,386 - -0.4 338,411 + +0.8 338,416 - -1.6 338,447 + -0.2 338,448 - -2.4 338,456 + +1.3 338,490 + -1.5 338,516 - -1.0 338,521 - -0.9
Or see this region's nucleotide sequence