Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17135 and HMPREF1058_RS17130 are separated by 152 nucleotides HMPREF1058_RS17130 and HMPREF1058_RS17125 are separated by 92 nucleotides HMPREF1058_RS17125 and HMPREF1058_RS17120 are separated by 111 nucleotides HMPREF1058_RS17120 and HMPREF1058_RS17115 are separated by 9 nucleotides
HMPREF1058_RS17135: HMPREF1058_RS17135 - DNA replication and repair protein RecF, at 516,309 to 517,424
_RS17135
HMPREF1058_RS17130: HMPREF1058_RS17130 - tetratricopeptide repeat protein, at 517,577 to 518,254
_RS17130
HMPREF1058_RS17125: HMPREF1058_RS17125 - 6,7-dimethyl-8-ribityllumazine synthase, at 518,347 to 518,853
_RS17125
HMPREF1058_RS17120: HMPREF1058_RS17120 - tRNA-Tyr, at 518,965 to 519,047
_RS17120
HMPREF1058_RS17115: HMPREF1058_RS17115 - tRNA-Gly, at 519,057 to 519,129
_RS17115
Position (kb) 517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 516.587 kb on - strand, within HMPREF1058_RS17135 at 516.717 kb on - strand, within HMPREF1058_RS17135 at 516.741 kb on - strand, within HMPREF1058_RS17135 at 516.789 kb on - strand, within HMPREF1058_RS17135 at 516.791 kb on - strand, within HMPREF1058_RS17135 at 516.791 kb on - strand, within HMPREF1058_RS17135 at 516.819 kb on - strand, within HMPREF1058_RS17135 at 516.960 kb on - strand, within HMPREF1058_RS17135 at 517.116 kb on - strand, within HMPREF1058_RS17135 at 517.172 kb on - strand, within HMPREF1058_RS17135 at 517.172 kb on - strand, within HMPREF1058_RS17135 at 517.172 kb on - strand, within HMPREF1058_RS17135 at 517.172 kb on - strand, within HMPREF1058_RS17135 at 517.174 kb on - strand, within HMPREF1058_RS17135 at 517.503 kb on + strand at 517.506 kb on + strand at 517.612 kb on + strand at 517.630 kb on + strand at 517.678 kb on + strand, within HMPREF1058_RS17130 at 517.696 kb on + strand, within HMPREF1058_RS17130 at 517.718 kb on + strand, within HMPREF1058_RS17130 at 517.749 kb on + strand, within HMPREF1058_RS17130 at 517.771 kb on + strand at 518.171 kb on + strand, within HMPREF1058_RS17130 at 518.204 kb on + strand at 518.224 kb on + strand at 518.224 kb on + strand at 518.224 kb on + strand at 518.228 kb on + strand at 518.228 kb on + strand at 518.228 kb on + strand at 518.265 kb on + strand at 518.301 kb on + strand at 518.301 kb on + strand at 519.133 kb on + strand at 519.148 kb on - strand at 519.148 kb on - strand at 519.191 kb on - strand at 519.222 kb on - strand at 519.222 kb on - strand at 519.230 kb on - strand at 519.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 516,587 - HMPREF1058_RS17135 0.25 -1.1 516,717 - HMPREF1058_RS17135 0.37 +0.3 516,741 - HMPREF1058_RS17135 0.39 -1.6 516,789 - HMPREF1058_RS17135 0.43 +0.1 516,791 - HMPREF1058_RS17135 0.43 -0.6 516,791 - HMPREF1058_RS17135 0.43 -0.4 516,819 - HMPREF1058_RS17135 0.46 -1.1 516,960 - HMPREF1058_RS17135 0.58 -1.7 517,116 - HMPREF1058_RS17135 0.72 -3.7 517,172 - HMPREF1058_RS17135 0.77 -0.7 517,172 - HMPREF1058_RS17135 0.77 -1.7 517,172 - HMPREF1058_RS17135 0.77 -1.2 517,172 - HMPREF1058_RS17135 0.77 -1.3 517,174 - HMPREF1058_RS17135 0.78 -1.7 517,503 + +0.5 517,506 + +0.0 517,612 + -1.7 517,630 + -0.1 517,678 + HMPREF1058_RS17130 0.15 -0.1 517,696 + HMPREF1058_RS17130 0.18 -0.7 517,718 + HMPREF1058_RS17130 0.21 -2.2 517,749 + HMPREF1058_RS17130 0.25 -0.7 517,771 + -0.4 518,171 + HMPREF1058_RS17130 0.88 -2.3 518,204 + -2.9 518,224 + -2.5 518,224 + -2.0 518,224 + -0.9 518,228 + -0.9 518,228 + -0.2 518,228 + -1.3 518,265 + +0.8 518,301 + -0.7 518,301 + -0.4 519,133 + +0.6 519,148 - +0.9 519,148 - +1.3 519,191 - -0.3 519,222 - -0.2 519,222 - -1.1 519,230 - +1.1 519,231 + -1.3
Or see this region's nucleotide sequence