Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17055 and HMPREF1058_RS17050 overlap by 4 nucleotides HMPREF1058_RS17050 and HMPREF1058_RS17045 are separated by 16 nucleotides HMPREF1058_RS17045 and HMPREF1058_RS17040 are separated by 19 nucleotides
HMPREF1058_RS17055: HMPREF1058_RS17055 - flippase-like domain-containing protein, at 528,975 to 529,976
_RS17055
HMPREF1058_RS17050: HMPREF1058_RS17050 - CDP-alcohol phosphatidyltransferase family protein, at 529,973 to 530,923
_RS17050
HMPREF1058_RS17045: HMPREF1058_RS17045 - hypothetical protein, at 530,940 to 531,782
_RS17045
HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512
_RS17040
Position (kb) 529
530
531 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 528.977 kb on - strand at 528.981 kb on - strand at 528.992 kb on + strand at 529.027 kb on - strand at 529.194 kb on + strand, within HMPREF1058_RS17055 at 529.263 kb on + strand, within HMPREF1058_RS17055 at 529.263 kb on + strand, within HMPREF1058_RS17055 at 529.313 kb on + strand, within HMPREF1058_RS17055 at 529.314 kb on - strand at 529.322 kb on + strand, within HMPREF1058_RS17055 at 529.483 kb on - strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.530 kb on - strand, within HMPREF1058_RS17055 at 529.552 kb on + strand, within HMPREF1058_RS17055 at 529.610 kb on - strand, within HMPREF1058_RS17055 at 529.648 kb on + strand, within HMPREF1058_RS17055 at 529.761 kb on - strand, within HMPREF1058_RS17055 at 529.790 kb on + strand, within HMPREF1058_RS17055 at 529.793 kb on + strand, within HMPREF1058_RS17055 at 529.794 kb on - strand, within HMPREF1058_RS17055 at 529.796 kb on - strand, within HMPREF1058_RS17055 at 529.823 kb on + strand at 529.824 kb on - strand, within HMPREF1058_RS17055 at 529.824 kb on - strand, within HMPREF1058_RS17055 at 529.877 kb on + strand at 529.924 kb on - strand at 529.955 kb on + strand at 529.956 kb on - strand at 529.964 kb on - strand at 529.991 kb on - strand at 529.991 kb on - strand at 530.032 kb on + strand at 530.032 kb on + strand at 530.033 kb on - strand at 530.034 kb on + strand at 530.037 kb on - strand at 530.077 kb on - strand, within HMPREF1058_RS17050 at 530.108 kb on - strand, within HMPREF1058_RS17050 at 530.108 kb on - strand, within HMPREF1058_RS17050 at 530.110 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.151 kb on + strand, within HMPREF1058_RS17050 at 530.239 kb on - strand, within HMPREF1058_RS17050 at 530.281 kb on + strand, within HMPREF1058_RS17050 at 530.283 kb on + strand, within HMPREF1058_RS17050 at 530.283 kb on + strand, within HMPREF1058_RS17050 at 530.298 kb on + strand, within HMPREF1058_RS17050 at 530.344 kb on - strand, within HMPREF1058_RS17050 at 530.417 kb on - strand, within HMPREF1058_RS17050 at 530.440 kb on + strand, within HMPREF1058_RS17050 at 530.441 kb on - strand, within HMPREF1058_RS17050 at 530.568 kb on + strand, within HMPREF1058_RS17050 at 530.588 kb on - strand, within HMPREF1058_RS17050 at 530.710 kb on + strand, within HMPREF1058_RS17050 at 530.751 kb on - strand, within HMPREF1058_RS17050 at 530.751 kb on - strand, within HMPREF1058_RS17050 at 530.756 kb on + strand, within HMPREF1058_RS17050 at 530.756 kb on + strand, within HMPREF1058_RS17050 at 530.826 kb on + strand, within HMPREF1058_RS17050 at 530.831 kb on + strand at 530.848 kb on - strand at 530.848 kb on - strand at 531.165 kb on + strand, within HMPREF1058_RS17045 at 531.323 kb on + strand, within HMPREF1058_RS17045 at 531.323 kb on + strand, within HMPREF1058_RS17045 at 531.324 kb on - strand, within HMPREF1058_RS17045 at 531.513 kb on - strand, within HMPREF1058_RS17045 at 531.513 kb on - strand, within HMPREF1058_RS17045 at 531.516 kb on + strand, within HMPREF1058_RS17045 at 531.517 kb on - strand, within HMPREF1058_RS17045 at 531.702 kb on - strand at 531.723 kb on + strand at 531.724 kb on - strand at 531.799 kb on - strand at 531.859 kb on + strand at 531.859 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 528,977 - +1.2 528,981 - +0.3 528,992 + -2.6 529,027 - +2.1 529,194 + HMPREF1058_RS17055 0.22 -3.1 529,263 + HMPREF1058_RS17055 0.29 -0.5 529,263 + HMPREF1058_RS17055 0.29 -2.5 529,313 + HMPREF1058_RS17055 0.34 -1.7 529,314 - +1.7 529,322 + HMPREF1058_RS17055 0.35 -1.3 529,483 - HMPREF1058_RS17055 0.51 +1.8 529,514 + HMPREF1058_RS17055 0.54 -0.1 529,514 + HMPREF1058_RS17055 0.54 -1.4 529,514 + HMPREF1058_RS17055 0.54 -3.1 529,515 - HMPREF1058_RS17055 0.54 -1.6 529,515 - HMPREF1058_RS17055 0.54 -1.1 529,515 - HMPREF1058_RS17055 0.54 -0.2 529,530 - HMPREF1058_RS17055 0.55 -0.6 529,552 + HMPREF1058_RS17055 0.58 +0.3 529,610 - HMPREF1058_RS17055 0.63 +2.4 529,648 + HMPREF1058_RS17055 0.67 +0.9 529,761 - HMPREF1058_RS17055 0.78 -0.9 529,790 + HMPREF1058_RS17055 0.81 -0.7 529,793 + HMPREF1058_RS17055 0.82 -1.2 529,794 - HMPREF1058_RS17055 0.82 -1.7 529,796 - HMPREF1058_RS17055 0.82 +0.7 529,823 + -0.4 529,824 - HMPREF1058_RS17055 0.85 -2.1 529,824 - HMPREF1058_RS17055 0.85 -0.0 529,877 + -2.2 529,924 - +0.8 529,955 + -1.2 529,956 - -0.9 529,964 - -0.3 529,991 - -0.6 529,991 - -0.7 530,032 + -1.3 530,032 + -0.9 530,033 - -2.9 530,034 + -0.1 530,037 - -1.1 530,077 - HMPREF1058_RS17050 0.11 -0.7 530,108 - HMPREF1058_RS17050 0.14 -0.9 530,108 - HMPREF1058_RS17050 0.14 +0.9 530,110 - HMPREF1058_RS17050 0.14 -2.1 530,112 - HMPREF1058_RS17050 0.15 -1.3 530,112 - HMPREF1058_RS17050 0.15 -0.9 530,112 - HMPREF1058_RS17050 0.15 -3.0 530,112 - HMPREF1058_RS17050 0.15 +0.3 530,151 + HMPREF1058_RS17050 0.19 -1.6 530,239 - HMPREF1058_RS17050 0.28 -2.6 530,281 + HMPREF1058_RS17050 0.32 -3.5 530,283 + HMPREF1058_RS17050 0.33 -2.9 530,283 + HMPREF1058_RS17050 0.33 -2.1 530,298 + HMPREF1058_RS17050 0.34 -1.9 530,344 - HMPREF1058_RS17050 0.39 -2.6 530,417 - HMPREF1058_RS17050 0.47 -2.0 530,440 + HMPREF1058_RS17050 0.49 -0.8 530,441 - HMPREF1058_RS17050 0.49 -4.4 530,568 + HMPREF1058_RS17050 0.63 -0.4 530,588 - HMPREF1058_RS17050 0.65 -1.0 530,710 + HMPREF1058_RS17050 0.77 +1.9 530,751 - HMPREF1058_RS17050 0.82 -1.3 530,751 - HMPREF1058_RS17050 0.82 -2.1 530,756 + HMPREF1058_RS17050 0.82 -3.9 530,756 + HMPREF1058_RS17050 0.82 -0.7 530,826 + HMPREF1058_RS17050 0.90 -2.4 530,831 + -0.1 530,848 - -1.4 530,848 - -4.1 531,165 + HMPREF1058_RS17045 0.27 -2.7 531,323 + HMPREF1058_RS17045 0.45 -3.3 531,323 + HMPREF1058_RS17045 0.45 -0.9 531,324 - HMPREF1058_RS17045 0.46 -1.9 531,513 - HMPREF1058_RS17045 0.68 -2.4 531,513 - HMPREF1058_RS17045 0.68 -3.8 531,516 + HMPREF1058_RS17045 0.68 +1.9 531,517 - HMPREF1058_RS17045 0.68 -0.9 531,702 - -1.3 531,723 + -1.4 531,724 - -0.8 531,799 - +0.4 531,859 + -1.1 531,859 + -2.4
Or see this region's nucleotide sequence