Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16695 and HMPREF1058_RS16690 overlap by 4 nucleotides HMPREF1058_RS16690 and HMPREF1058_RS16685 are separated by 194 nucleotides
HMPREF1058_RS16695: HMPREF1058_RS16695 - phosphotransferase, at 614,640 to 616,070
_RS16695
HMPREF1058_RS16690: HMPREF1058_RS16690 - NTP transferase domain-containing protein, at 616,067 to 616,912
_RS16690
HMPREF1058_RS16685: HMPREF1058_RS16685 - methionine synthase, at 617,107 to 619,860
_RS16685
Position (kb) 616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 615.184 kb on + strand, within HMPREF1058_RS16695 at 615.290 kb on + strand, within HMPREF1058_RS16695 at 615.290 kb on + strand, within HMPREF1058_RS16695 at 615.313 kb on + strand, within HMPREF1058_RS16695 at 615.342 kb on - strand, within HMPREF1058_RS16695 at 615.381 kb on + strand, within HMPREF1058_RS16695 at 615.382 kb on - strand, within HMPREF1058_RS16695 at 615.382 kb on - strand, within HMPREF1058_RS16695 at 615.412 kb on + strand, within HMPREF1058_RS16695 at 615.423 kb on + strand, within HMPREF1058_RS16695 at 615.499 kb on - strand, within HMPREF1058_RS16695 at 615.591 kb on + strand, within HMPREF1058_RS16695 at 615.607 kb on + strand, within HMPREF1058_RS16695 at 615.732 kb on + strand, within HMPREF1058_RS16695 at 615.733 kb on - strand, within HMPREF1058_RS16695 at 615.733 kb on - strand, within HMPREF1058_RS16695 at 615.841 kb on + strand, within HMPREF1058_RS16695 at 615.989 kb on + strand at 616.024 kb on + strand at 616.042 kb on + strand at 616.042 kb on + strand at 616.043 kb on - strand at 616.043 kb on - strand at 616.109 kb on - strand at 616.212 kb on + strand, within HMPREF1058_RS16690 at 616.212 kb on + strand, within HMPREF1058_RS16690 at 616.354 kb on - strand, within HMPREF1058_RS16690 at 616.372 kb on + strand, within HMPREF1058_RS16690 at 616.373 kb on - strand, within HMPREF1058_RS16690 at 616.487 kb on + strand, within HMPREF1058_RS16690 at 616.487 kb on + strand, within HMPREF1058_RS16690 at 616.503 kb on + strand, within HMPREF1058_RS16690 at 616.504 kb on - strand, within HMPREF1058_RS16690 at 616.504 kb on - strand, within HMPREF1058_RS16690 at 616.544 kb on + strand, within HMPREF1058_RS16690 at 616.556 kb on - strand, within HMPREF1058_RS16690 at 616.619 kb on - strand, within HMPREF1058_RS16690 at 616.635 kb on + strand, within HMPREF1058_RS16690 at 616.690 kb on + strand, within HMPREF1058_RS16690 at 616.712 kb on + strand, within HMPREF1058_RS16690 at 616.712 kb on + strand, within HMPREF1058_RS16690 at 616.776 kb on - strand, within HMPREF1058_RS16690 at 616.829 kb on + strand at 616.829 kb on + strand at 616.928 kb on + strand at 616.928 kb on + strand at 616.962 kb on - strand at 617.057 kb on - strand at 617.086 kb on - strand at 617.198 kb on + strand at 617.320 kb on + strand at 617.335 kb on - strand at 617.335 kb on - strand at 617.338 kb on + strand at 617.339 kb on - strand at 617.459 kb on - strand, within HMPREF1058_RS16685 at 617.461 kb on - strand, within HMPREF1058_RS16685 at 617.479 kb on - strand, within HMPREF1058_RS16685 at 617.492 kb on - strand, within HMPREF1058_RS16685 at 617.525 kb on - strand, within HMPREF1058_RS16685 at 617.525 kb on - strand, within HMPREF1058_RS16685 at 617.527 kb on - strand, within HMPREF1058_RS16685 at 617.527 kb on - strand, within HMPREF1058_RS16685 at 617.535 kb on - strand, within HMPREF1058_RS16685 at 617.612 kb on - strand, within HMPREF1058_RS16685 at 617.760 kb on + strand, within HMPREF1058_RS16685 at 617.761 kb on - strand, within HMPREF1058_RS16685 at 617.761 kb on - strand, within HMPREF1058_RS16685 at 617.804 kb on + strand, within HMPREF1058_RS16685 at 617.857 kb on + strand, within HMPREF1058_RS16685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 615,184 + HMPREF1058_RS16695 0.38 -2.0 615,290 + HMPREF1058_RS16695 0.45 -2.6 615,290 + HMPREF1058_RS16695 0.45 -1.0 615,313 + HMPREF1058_RS16695 0.47 -1.4 615,342 - HMPREF1058_RS16695 0.49 -0.4 615,381 + HMPREF1058_RS16695 0.52 -1.2 615,382 - HMPREF1058_RS16695 0.52 -1.8 615,382 - HMPREF1058_RS16695 0.52 -0.8 615,412 + HMPREF1058_RS16695 0.54 +0.0 615,423 + HMPREF1058_RS16695 0.55 -0.1 615,499 - HMPREF1058_RS16695 0.60 +0.9 615,591 + HMPREF1058_RS16695 0.66 -0.9 615,607 + HMPREF1058_RS16695 0.68 -0.0 615,732 + HMPREF1058_RS16695 0.76 -0.1 615,733 - HMPREF1058_RS16695 0.76 +2.5 615,733 - HMPREF1058_RS16695 0.76 -0.1 615,841 + HMPREF1058_RS16695 0.84 -0.8 615,989 + -1.1 616,024 + -1.9 616,042 + -2.6 616,042 + +0.1 616,043 - +0.5 616,043 - -1.5 616,109 - -0.9 616,212 + HMPREF1058_RS16690 0.17 -1.0 616,212 + HMPREF1058_RS16690 0.17 -2.5 616,354 - HMPREF1058_RS16690 0.34 -3.1 616,372 + HMPREF1058_RS16690 0.36 -1.9 616,373 - HMPREF1058_RS16690 0.36 -1.4 616,487 + HMPREF1058_RS16690 0.50 +0.6 616,487 + HMPREF1058_RS16690 0.50 -2.4 616,503 + HMPREF1058_RS16690 0.52 -1.4 616,504 - HMPREF1058_RS16690 0.52 -0.6 616,504 - HMPREF1058_RS16690 0.52 -0.9 616,544 + HMPREF1058_RS16690 0.56 -1.2 616,556 - HMPREF1058_RS16690 0.58 -1.7 616,619 - HMPREF1058_RS16690 0.65 -1.2 616,635 + HMPREF1058_RS16690 0.67 -1.3 616,690 + HMPREF1058_RS16690 0.74 -1.4 616,712 + HMPREF1058_RS16690 0.76 -0.3 616,712 + HMPREF1058_RS16690 0.76 -2.8 616,776 - HMPREF1058_RS16690 0.84 -1.0 616,829 + -0.9 616,829 + -0.1 616,928 + -1.4 616,928 + +0.6 616,962 - +0.3 617,057 - +0.4 617,086 - +1.2 617,198 + -0.9 617,320 + +1.5 617,335 - -0.7 617,335 - -0.7 617,338 + -2.3 617,339 - -0.7 617,459 - HMPREF1058_RS16685 0.13 -0.4 617,461 - HMPREF1058_RS16685 0.13 -0.6 617,479 - HMPREF1058_RS16685 0.14 +0.2 617,492 - HMPREF1058_RS16685 0.14 -1.6 617,525 - HMPREF1058_RS16685 0.15 -0.1 617,525 - HMPREF1058_RS16685 0.15 +1.1 617,527 - HMPREF1058_RS16685 0.15 +0.0 617,527 - HMPREF1058_RS16685 0.15 +0.1 617,535 - HMPREF1058_RS16685 0.16 +0.0 617,612 - HMPREF1058_RS16685 0.18 +1.2 617,760 + HMPREF1058_RS16685 0.24 -0.5 617,761 - HMPREF1058_RS16685 0.24 -0.7 617,761 - HMPREF1058_RS16685 0.24 +0.0 617,804 + HMPREF1058_RS16685 0.25 -0.1 617,857 + HMPREF1058_RS16685 0.27 -0.5
Or see this region's nucleotide sequence