Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16400 and HMPREF1058_RS16395 are separated by 214 nucleotides HMPREF1058_RS16395 and HMPREF1058_RS16390 are separated by 2 nucleotides HMPREF1058_RS16390 and HMPREF1058_RS16385 are separated by 194 nucleotides
HMPREF1058_RS16400: HMPREF1058_RS16400 - DUF4738 domain-containing protein, at 679,982 to 680,551
_RS16400
HMPREF1058_RS16395: HMPREF1058_RS16395 - TrkA family potassium uptake protein, at 680,766 to 681,452
_RS16395
HMPREF1058_RS16390: HMPREF1058_RS16390 - potassium transporter, at 681,455 to 683,284
_RS16390
HMPREF1058_RS16385: HMPREF1058_RS16385 - TrpB-like pyridoxal phosphate-dependent enzyme, at 683,479 to 684,843
_RS16385
Position (kb) 681
682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 680.510 kb on + strand at 680.511 kb on - strand at 680.511 kb on - strand at 680.539 kb on - strand at 680.540 kb on + strand at 680.579 kb on + strand at 680.679 kb on - strand at 680.679 kb on - strand at 680.690 kb on + strand at 680.700 kb on + strand at 680.767 kb on + strand at 680.888 kb on + strand, within HMPREF1058_RS16395 at 680.889 kb on - strand, within HMPREF1058_RS16395 at 680.920 kb on - strand, within HMPREF1058_RS16395 at 680.975 kb on + strand, within HMPREF1058_RS16395 at 680.976 kb on - strand, within HMPREF1058_RS16395 at 680.978 kb on - strand, within HMPREF1058_RS16395 at 681.016 kb on + strand, within HMPREF1058_RS16395 at 681.017 kb on - strand, within HMPREF1058_RS16395 at 681.017 kb on - strand, within HMPREF1058_RS16395 at 681.111 kb on - strand, within HMPREF1058_RS16395 at 681.113 kb on + strand, within HMPREF1058_RS16395 at 681.114 kb on - strand, within HMPREF1058_RS16395 at 681.118 kb on - strand, within HMPREF1058_RS16395 at 681.144 kb on - strand, within HMPREF1058_RS16395 at 681.169 kb on + strand, within HMPREF1058_RS16395 at 681.170 kb on - strand, within HMPREF1058_RS16395 at 681.170 kb on - strand, within HMPREF1058_RS16395 at 681.173 kb on + strand, within HMPREF1058_RS16395 at 681.173 kb on + strand, within HMPREF1058_RS16395 at 681.174 kb on - strand, within HMPREF1058_RS16395 at 681.441 kb on - strand at 681.445 kb on + strand at 681.453 kb on - strand at 681.457 kb on - strand at 681.483 kb on + strand at 681.511 kb on + strand at 681.532 kb on + strand at 681.624 kb on - strand at 681.771 kb on - strand, within HMPREF1058_RS16390 at 681.806 kb on + strand, within HMPREF1058_RS16390 at 681.807 kb on - strand, within HMPREF1058_RS16390 at 681.937 kb on + strand, within HMPREF1058_RS16390 at 682.076 kb on + strand, within HMPREF1058_RS16390 at 682.125 kb on - strand, within HMPREF1058_RS16390 at 682.131 kb on - strand, within HMPREF1058_RS16390 at 682.150 kb on + strand, within HMPREF1058_RS16390 at 682.150 kb on + strand, within HMPREF1058_RS16390 at 682.233 kb on - strand, within HMPREF1058_RS16390 at 682.267 kb on + strand, within HMPREF1058_RS16390 at 682.267 kb on + strand, within HMPREF1058_RS16390 at 682.267 kb on + strand, within HMPREF1058_RS16390 at 682.268 kb on - strand, within HMPREF1058_RS16390 at 682.268 kb on - strand, within HMPREF1058_RS16390 at 682.268 kb on - strand, within HMPREF1058_RS16390 at 682.391 kb on - strand, within HMPREF1058_RS16390 at 682.412 kb on + strand, within HMPREF1058_RS16390 at 682.414 kb on + strand, within HMPREF1058_RS16390 at 682.415 kb on - strand, within HMPREF1058_RS16390 at 682.467 kb on - strand, within HMPREF1058_RS16390 at 682.470 kb on - strand, within HMPREF1058_RS16390 at 682.472 kb on - strand, within HMPREF1058_RS16390 at 682.473 kb on + strand, within HMPREF1058_RS16390 at 682.474 kb on - strand, within HMPREF1058_RS16390 at 682.475 kb on + strand, within HMPREF1058_RS16390 at 682.475 kb on + strand, within HMPREF1058_RS16390 at 682.475 kb on + strand, within HMPREF1058_RS16390 at 682.476 kb on - strand, within HMPREF1058_RS16390 at 682.543 kb on - strand, within HMPREF1058_RS16390 at 682.743 kb on + strand, within HMPREF1058_RS16390 at 682.790 kb on + strand, within HMPREF1058_RS16390 at 682.904 kb on + strand, within HMPREF1058_RS16390 at 683.103 kb on + strand at 683.103 kb on + strand at 683.103 kb on + strand at 683.158 kb on - strand at 683.167 kb on + strand at 683.167 kb on + strand at 683.168 kb on - strand at 683.193 kb on + strand at 683.193 kb on + strand at 683.194 kb on - strand at 683.194 kb on - strand at 683.194 kb on - strand at 683.228 kb on + strand at 683.228 kb on + strand at 683.229 kb on - strand at 683.229 kb on - strand at 683.260 kb on + strand at 683.265 kb on - strand at 683.346 kb on + strand at 683.347 kb on - strand at 683.349 kb on + strand at 683.357 kb on - strand at 683.371 kb on - strand at 683.421 kb on + strand at 683.422 kb on - strand at 683.502 kb on + strand at 683.544 kb on - strand at 683.713 kb on + strand, within HMPREF1058_RS16385 at 683.714 kb on - strand, within HMPREF1058_RS16385 at 683.714 kb on - strand, within HMPREF1058_RS16385 at 683.779 kb on - strand, within HMPREF1058_RS16385 at 683.849 kb on - strand, within HMPREF1058_RS16385 at 683.923 kb on + strand, within HMPREF1058_RS16385 at 683.923 kb on + strand, within HMPREF1058_RS16385 at 683.967 kb on - strand, within HMPREF1058_RS16385 at 683.978 kb on - strand, within HMPREF1058_RS16385 at 684.051 kb on + strand, within HMPREF1058_RS16385 at 684.162 kb on + strand, within HMPREF1058_RS16385 at 684.168 kb on - strand, within HMPREF1058_RS16385 at 684.168 kb on - strand, within HMPREF1058_RS16385 at 684.179 kb on + strand, within HMPREF1058_RS16385
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 680,510 + -1.6 680,511 - -1.8 680,511 - -1.4 680,539 - -0.6 680,540 + +3.9 680,579 + +0.3 680,679 - +0.2 680,679 - -0.4 680,690 + +1.0 680,700 + +0.8 680,767 + -0.7 680,888 + HMPREF1058_RS16395 0.18 -0.6 680,889 - HMPREF1058_RS16395 0.18 +1.4 680,920 - HMPREF1058_RS16395 0.22 -0.4 680,975 + HMPREF1058_RS16395 0.30 +0.5 680,976 - HMPREF1058_RS16395 0.31 +0.6 680,978 - HMPREF1058_RS16395 0.31 +0.7 681,016 + HMPREF1058_RS16395 0.36 -0.0 681,017 - HMPREF1058_RS16395 0.37 +0.7 681,017 - HMPREF1058_RS16395 0.37 +0.1 681,111 - HMPREF1058_RS16395 0.50 -0.7 681,113 + HMPREF1058_RS16395 0.51 +0.5 681,114 - HMPREF1058_RS16395 0.51 +0.8 681,118 - HMPREF1058_RS16395 0.51 +0.3 681,144 - HMPREF1058_RS16395 0.55 +1.7 681,169 + HMPREF1058_RS16395 0.59 -0.7 681,170 - HMPREF1058_RS16395 0.59 +0.5 681,170 - HMPREF1058_RS16395 0.59 +0.7 681,173 + HMPREF1058_RS16395 0.59 -2.2 681,173 + HMPREF1058_RS16395 0.59 -0.6 681,174 - HMPREF1058_RS16395 0.59 +1.3 681,441 - -0.1 681,445 + -0.2 681,453 - -0.1 681,457 - +1.0 681,483 + +1.2 681,511 + +0.9 681,532 + +0.1 681,624 - +0.7 681,771 - HMPREF1058_RS16390 0.17 +1.1 681,806 + HMPREF1058_RS16390 0.19 +1.4 681,807 - HMPREF1058_RS16390 0.19 +0.6 681,937 + HMPREF1058_RS16390 0.26 -0.9 682,076 + HMPREF1058_RS16390 0.34 -1.0 682,125 - HMPREF1058_RS16390 0.37 -0.5 682,131 - HMPREF1058_RS16390 0.37 +1.3 682,150 + HMPREF1058_RS16390 0.38 -2.1 682,150 + HMPREF1058_RS16390 0.38 -0.1 682,233 - HMPREF1058_RS16390 0.43 -0.9 682,267 + HMPREF1058_RS16390 0.44 -1.6 682,267 + HMPREF1058_RS16390 0.44 +0.1 682,267 + HMPREF1058_RS16390 0.44 +0.4 682,268 - HMPREF1058_RS16390 0.44 +1.2 682,268 - HMPREF1058_RS16390 0.44 +1.0 682,268 - HMPREF1058_RS16390 0.44 -0.2 682,391 - HMPREF1058_RS16390 0.51 -1.1 682,412 + HMPREF1058_RS16390 0.52 -0.9 682,414 + HMPREF1058_RS16390 0.52 -0.4 682,415 - HMPREF1058_RS16390 0.52 -0.8 682,467 - HMPREF1058_RS16390 0.55 +0.7 682,470 - HMPREF1058_RS16390 0.55 -2.7 682,472 - HMPREF1058_RS16390 0.56 -1.7 682,473 + HMPREF1058_RS16390 0.56 +0.1 682,474 - HMPREF1058_RS16390 0.56 +0.3 682,475 + HMPREF1058_RS16390 0.56 -0.3 682,475 + HMPREF1058_RS16390 0.56 -0.2 682,475 + HMPREF1058_RS16390 0.56 -1.4 682,476 - HMPREF1058_RS16390 0.56 +0.0 682,543 - HMPREF1058_RS16390 0.59 +1.0 682,743 + HMPREF1058_RS16390 0.70 +0.6 682,790 + HMPREF1058_RS16390 0.73 -1.2 682,904 + HMPREF1058_RS16390 0.79 -0.4 683,103 + +0.6 683,103 + +0.8 683,103 + +1.0 683,158 - +0.4 683,167 + -0.2 683,167 + -0.2 683,168 - +1.1 683,193 + +0.7 683,193 + -0.3 683,194 - -1.2 683,194 - -0.7 683,194 - +1.1 683,228 + +0.6 683,228 + +0.6 683,229 - -0.7 683,229 - -0.3 683,260 + +1.7 683,265 - -0.4 683,346 + +0.1 683,347 - +0.6 683,349 + +0.8 683,357 - +1.5 683,371 - +1.7 683,421 + -0.8 683,422 - -0.4 683,502 + -0.4 683,544 - +0.7 683,713 + HMPREF1058_RS16385 0.17 -2.3 683,714 - HMPREF1058_RS16385 0.17 +1.2 683,714 - HMPREF1058_RS16385 0.17 +1.2 683,779 - HMPREF1058_RS16385 0.22 -0.6 683,849 - HMPREF1058_RS16385 0.27 +0.2 683,923 + HMPREF1058_RS16385 0.33 -0.2 683,923 + HMPREF1058_RS16385 0.33 +1.0 683,967 - HMPREF1058_RS16385 0.36 +1.5 683,978 - HMPREF1058_RS16385 0.37 -0.2 684,051 + HMPREF1058_RS16385 0.42 -0.7 684,162 + HMPREF1058_RS16385 0.50 -0.5 684,168 - HMPREF1058_RS16385 0.50 +0.2 684,168 - HMPREF1058_RS16385 0.50 -3.0 684,179 + HMPREF1058_RS16385 0.51 -0.7
Or see this region's nucleotide sequence