Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15875 and HMPREF1058_RS15870 are separated by 49 nucleotides HMPREF1058_RS15870 and HMPREF1058_RS15865 are separated by 228 nucleotides HMPREF1058_RS15865 and HMPREF1058_RS15860 are separated by 10 nucleotides
HMPREF1058_RS15875: HMPREF1058_RS15875 - histidinol dehydrogenase, at 815,990 to 817,270
_RS15875
HMPREF1058_RS15870: HMPREF1058_RS15870 - ATP phosphoribosyltransferase, at 817,320 to 818,171
_RS15870
HMPREF1058_RS15865: HMPREF1058_RS15865 - PaaI family thioesterase, at 818,400 to 818,891
_RS15865
HMPREF1058_RS15860: HMPREF1058_RS15860 - Dabb family protein, at 818,902 to 819,201
_RS15860
Position (kb) 817
818
819 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 816.435 kb on + strand, within HMPREF1058_RS15875 at 816.467 kb on - strand, within HMPREF1058_RS15875 at 816.589 kb on + strand, within HMPREF1058_RS15875 at 816.593 kb on + strand, within HMPREF1058_RS15875 at 816.639 kb on + strand, within HMPREF1058_RS15875 at 816.640 kb on - strand, within HMPREF1058_RS15875 at 816.740 kb on - strand, within HMPREF1058_RS15875 at 816.766 kb on - strand, within HMPREF1058_RS15875 at 816.816 kb on - strand, within HMPREF1058_RS15875 at 816.863 kb on + strand, within HMPREF1058_RS15875 at 816.864 kb on - strand, within HMPREF1058_RS15875 at 817.028 kb on - strand, within HMPREF1058_RS15875 at 817.111 kb on + strand, within HMPREF1058_RS15875 at 817.111 kb on + strand, within HMPREF1058_RS15875 at 817.255 kb on - strand at 817.270 kb on + strand at 817.271 kb on - strand at 817.276 kb on + strand at 817.277 kb on - strand at 817.284 kb on + strand at 817.321 kb on + strand at 817.421 kb on + strand, within HMPREF1058_RS15870 at 817.421 kb on + strand, within HMPREF1058_RS15870 at 817.421 kb on + strand, within HMPREF1058_RS15870 at 817.422 kb on - strand, within HMPREF1058_RS15870 at 817.422 kb on - strand, within HMPREF1058_RS15870 at 817.535 kb on - strand, within HMPREF1058_RS15870 at 817.535 kb on - strand, within HMPREF1058_RS15870 at 817.620 kb on - strand, within HMPREF1058_RS15870 at 817.688 kb on + strand, within HMPREF1058_RS15870 at 817.689 kb on - strand, within HMPREF1058_RS15870 at 817.689 kb on - strand, within HMPREF1058_RS15870 at 817.715 kb on + strand, within HMPREF1058_RS15870 at 817.822 kb on + strand, within HMPREF1058_RS15870 at 817.839 kb on - strand, within HMPREF1058_RS15870 at 817.881 kb on - strand, within HMPREF1058_RS15870 at 817.881 kb on - strand, within HMPREF1058_RS15870 at 817.884 kb on + strand, within HMPREF1058_RS15870 at 818.064 kb on + strand, within HMPREF1058_RS15870 at 818.204 kb on + strand at 818.215 kb on + strand at 818.242 kb on + strand at 818.242 kb on + strand at 818.244 kb on + strand at 818.247 kb on + strand at 818.247 kb on + strand at 818.248 kb on - strand at 818.248 kb on - strand at 818.355 kb on - strand at 818.407 kb on - strand at 818.526 kb on - strand, within HMPREF1058_RS15865 at 818.531 kb on - strand, within HMPREF1058_RS15865 at 818.550 kb on + strand, within HMPREF1058_RS15865 at 818.556 kb on - strand, within HMPREF1058_RS15865 at 818.648 kb on + strand, within HMPREF1058_RS15865 at 818.732 kb on + strand, within HMPREF1058_RS15865 at 818.774 kb on + strand, within HMPREF1058_RS15865 at 818.774 kb on + strand, within HMPREF1058_RS15865 at 818.779 kb on - strand, within HMPREF1058_RS15865 at 818.849 kb on + strand at 818.849 kb on + strand at 818.850 kb on - strand at 818.891 kb on + strand at 818.903 kb on + strand at 818.913 kb on - strand at 819.074 kb on - strand, within HMPREF1058_RS15860 at 819.074 kb on - strand, within HMPREF1058_RS15860 at 819.084 kb on + strand, within HMPREF1058_RS15860 at 819.091 kb on + strand, within HMPREF1058_RS15860 at 819.124 kb on - strand, within HMPREF1058_RS15860
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 816,435 + HMPREF1058_RS15875 0.35 -3.3 816,467 - HMPREF1058_RS15875 0.37 -3.3 816,589 + HMPREF1058_RS15875 0.47 -2.5 816,593 + HMPREF1058_RS15875 0.47 -4.1 816,639 + HMPREF1058_RS15875 0.51 -5.7 816,640 - HMPREF1058_RS15875 0.51 -4.5 816,740 - HMPREF1058_RS15875 0.59 -2.3 816,766 - HMPREF1058_RS15875 0.61 -1.1 816,816 - HMPREF1058_RS15875 0.64 -2.3 816,863 + HMPREF1058_RS15875 0.68 -4.0 816,864 - HMPREF1058_RS15875 0.68 -1.7 817,028 - HMPREF1058_RS15875 0.81 -2.6 817,111 + HMPREF1058_RS15875 0.88 -2.7 817,111 + HMPREF1058_RS15875 0.88 -3.2 817,255 - -2.3 817,270 + -4.1 817,271 - -2.1 817,276 + -3.2 817,277 - -0.8 817,284 + -0.9 817,321 + -4.2 817,421 + HMPREF1058_RS15870 0.12 -3.6 817,421 + HMPREF1058_RS15870 0.12 -2.9 817,421 + HMPREF1058_RS15870 0.12 -2.0 817,422 - HMPREF1058_RS15870 0.12 -1.4 817,422 - HMPREF1058_RS15870 0.12 -2.7 817,535 - HMPREF1058_RS15870 0.25 -5.9 817,535 - HMPREF1058_RS15870 0.25 -2.2 817,620 - HMPREF1058_RS15870 0.35 -5.0 817,688 + HMPREF1058_RS15870 0.43 -3.7 817,689 - HMPREF1058_RS15870 0.43 -3.8 817,689 - HMPREF1058_RS15870 0.43 -1.4 817,715 + HMPREF1058_RS15870 0.46 -4.5 817,822 + HMPREF1058_RS15870 0.59 -2.9 817,839 - HMPREF1058_RS15870 0.61 -3.1 817,881 - HMPREF1058_RS15870 0.66 -4.1 817,881 - HMPREF1058_RS15870 0.66 -3.6 817,884 + HMPREF1058_RS15870 0.66 -3.1 818,064 + HMPREF1058_RS15870 0.87 -2.5 818,204 + -2.1 818,215 + -4.9 818,242 + -4.6 818,242 + -2.2 818,244 + -4.1 818,247 + -4.2 818,247 + -3.0 818,248 - -0.6 818,248 - -0.1 818,355 - +0.5 818,407 - +0.2 818,526 - HMPREF1058_RS15865 0.26 -1.6 818,531 - HMPREF1058_RS15865 0.27 -0.1 818,550 + HMPREF1058_RS15865 0.30 -0.8 818,556 - HMPREF1058_RS15865 0.32 -0.5 818,648 + HMPREF1058_RS15865 0.50 +0.1 818,732 + HMPREF1058_RS15865 0.67 +0.4 818,774 + HMPREF1058_RS15865 0.76 +0.5 818,774 + HMPREF1058_RS15865 0.76 -0.4 818,779 - HMPREF1058_RS15865 0.77 -1.0 818,849 + -0.1 818,849 + +0.9 818,850 - -0.6 818,891 + +0.2 818,903 + +1.2 818,913 - -1.2 819,074 - HMPREF1058_RS15860 0.57 -0.1 819,074 - HMPREF1058_RS15860 0.57 -1.7 819,084 + HMPREF1058_RS15860 0.61 +1.3 819,091 + HMPREF1058_RS15860 0.63 +0.1 819,124 - HMPREF1058_RS15860 0.74 +0.5
Or see this region's nucleotide sequence