Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15230

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15235 and HMPREF1058_RS15230 are separated by 11 nucleotidesHMPREF1058_RS15230 and HMPREF1058_RS15225 are separated by 111 nucleotides HMPREF1058_RS15235: HMPREF1058_RS15235 - UDP-N-acetylmuramate dehydrogenase, at 968,432 to 969,445 _RS15235 HMPREF1058_RS15230: HMPREF1058_RS15230 - DUF4348 domain-containing protein, at 969,457 to 970,317 _RS15230 HMPREF1058_RS15225: HMPREF1058_RS15225 - phenylalanine--tRNA ligase subunit alpha, at 970,429 to 971,463 _RS15225 Position (kb) 969 970 971Strain fitness (log2 ratio) -3 -2 -1 0 1at 969.602 kb on - strand, within HMPREF1058_RS15230at 969.771 kb on - strand, within HMPREF1058_RS15230at 969.867 kb on - strand, within HMPREF1058_RS15230at 969.867 kb on - strand, within HMPREF1058_RS15230at 969.908 kb on - strand, within HMPREF1058_RS15230at 969.931 kb on - strand, within HMPREF1058_RS15230at 969.931 kb on - strand, within HMPREF1058_RS15230at 969.976 kb on - strand, within HMPREF1058_RS15230at 970.051 kb on - strand, within HMPREF1058_RS15230

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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969,602 - HMPREF1058_RS15230 0.17 -2.3
969,771 - HMPREF1058_RS15230 0.36 -1.6
969,867 - HMPREF1058_RS15230 0.48 -3.6
969,867 - HMPREF1058_RS15230 0.48 -2.0
969,908 - HMPREF1058_RS15230 0.52 -0.4
969,931 - HMPREF1058_RS15230 0.55 -1.9
969,931 - HMPREF1058_RS15230 0.55 -1.4
969,976 - HMPREF1058_RS15230 0.60 -1.9
970,051 - HMPREF1058_RS15230 0.69 -2.4

Or see this region's nucleotide sequence