Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS14595 and HMPREF1058_RS14590 are separated by 96 nucleotides HMPREF1058_RS14590 and HMPREF1058_RS14585 are separated by 331 nucleotides
HMPREF1058_RS14595: HMPREF1058_RS14595 - dihydrofolate reductase, at 1,161,238 to 1,163,250
_RS14595
HMPREF1058_RS14590: HMPREF1058_RS14590 - AraC family transcriptional regulator, at 1,163,347 to 1,163,814
_RS14590
HMPREF1058_RS14585: HMPREF1058_RS14585 - DNA helicase RecQ, at 1,164,146 to 1,165,963
_RS14585
Position (kb) 1163
1164 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1162.406 kb on + strand, within HMPREF1058_RS14595 at 1162.438 kb on - strand, within HMPREF1058_RS14595 at 1162.514 kb on + strand, within HMPREF1058_RS14595 at 1162.524 kb on + strand, within HMPREF1058_RS14595 at 1162.629 kb on + strand, within HMPREF1058_RS14595 at 1162.630 kb on - strand, within HMPREF1058_RS14595 at 1162.950 kb on - strand, within HMPREF1058_RS14595 at 1163.002 kb on - strand, within HMPREF1058_RS14595 at 1163.002 kb on - strand, within HMPREF1058_RS14595 at 1163.002 kb on - strand, within HMPREF1058_RS14595 at 1163.005 kb on + strand, within HMPREF1058_RS14595 at 1163.023 kb on - strand, within HMPREF1058_RS14595 at 1163.028 kb on + strand, within HMPREF1058_RS14595 at 1163.039 kb on + strand, within HMPREF1058_RS14595 at 1163.096 kb on + strand at 1163.141 kb on + strand at 1163.187 kb on + strand at 1163.187 kb on + strand at 1163.221 kb on - strand at 1163.271 kb on + strand at 1163.325 kb on + strand at 1163.328 kb on - strand at 1163.371 kb on - strand at 1163.444 kb on - strand, within HMPREF1058_RS14590 at 1163.472 kb on + strand, within HMPREF1058_RS14590 at 1163.479 kb on - strand, within HMPREF1058_RS14590 at 1163.518 kb on - strand, within HMPREF1058_RS14590 at 1163.590 kb on - strand, within HMPREF1058_RS14590 at 1163.627 kb on + strand, within HMPREF1058_RS14590 at 1163.851 kb on - strand at 1163.855 kb on - strand at 1163.859 kb on - strand at 1163.869 kb on - strand at 1163.872 kb on + strand at 1163.991 kb on + strand at 1163.991 kb on + strand at 1163.992 kb on - strand at 1164.012 kb on + strand at 1164.123 kb on - strand at 1164.145 kb on + strand at 1164.146 kb on - strand at 1164.146 kb on - strand at 1164.205 kb on + strand at 1164.206 kb on - strand at 1164.217 kb on + strand at 1164.243 kb on + strand at 1164.308 kb on - strand at 1164.363 kb on + strand, within HMPREF1058_RS14585 at 1164.364 kb on - strand at 1164.491 kb on - strand, within HMPREF1058_RS14585 at 1164.592 kb on + strand, within HMPREF1058_RS14585 at 1164.609 kb on + strand, within HMPREF1058_RS14585 at 1164.610 kb on - strand, within HMPREF1058_RS14585 at 1164.640 kb on - strand, within HMPREF1058_RS14585 at 1164.717 kb on - strand, within HMPREF1058_RS14585
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 1,162,406 + HMPREF1058_RS14595 0.58 +0.3 1,162,438 - HMPREF1058_RS14595 0.60 -0.3 1,162,514 + HMPREF1058_RS14595 0.63 +0.1 1,162,524 + HMPREF1058_RS14595 0.64 +0.1 1,162,629 + HMPREF1058_RS14595 0.69 -0.4 1,162,630 - HMPREF1058_RS14595 0.69 +2.1 1,162,950 - HMPREF1058_RS14595 0.85 -1.7 1,163,002 - HMPREF1058_RS14595 0.88 -1.6 1,163,002 - HMPREF1058_RS14595 0.88 -1.4 1,163,002 - HMPREF1058_RS14595 0.88 -1.4 1,163,005 + HMPREF1058_RS14595 0.88 -1.1 1,163,023 - HMPREF1058_RS14595 0.89 -1.3 1,163,028 + HMPREF1058_RS14595 0.89 -0.3 1,163,039 + HMPREF1058_RS14595 0.89 -0.5 1,163,096 + +0.1 1,163,141 + -1.6 1,163,187 + -2.8 1,163,187 + -2.9 1,163,221 - -2.1 1,163,271 + -0.1 1,163,325 + -1.9 1,163,328 - -3.8 1,163,371 - -1.8 1,163,444 - HMPREF1058_RS14590 0.21 +0.0 1,163,472 + HMPREF1058_RS14590 0.27 -0.1 1,163,479 - HMPREF1058_RS14590 0.28 +0.9 1,163,518 - HMPREF1058_RS14590 0.37 -2.9 1,163,590 - HMPREF1058_RS14590 0.52 +0.9 1,163,627 + HMPREF1058_RS14590 0.60 -2.1 1,163,851 - -2.7 1,163,855 - -1.4 1,163,859 - -1.6 1,163,869 - -0.5 1,163,872 + -1.8 1,163,991 + +0.3 1,163,991 + -0.7 1,163,992 - +1.7 1,164,012 + +0.3 1,164,123 - +0.9 1,164,145 + +1.1 1,164,146 - +0.3 1,164,146 - -0.5 1,164,205 + +1.4 1,164,206 - +1.3 1,164,217 + +0.1 1,164,243 + -0.0 1,164,308 - +0.3 1,164,363 + HMPREF1058_RS14585 0.12 -2.2 1,164,364 - -0.7 1,164,491 - HMPREF1058_RS14585 0.19 +0.0 1,164,592 + HMPREF1058_RS14585 0.25 -1.0 1,164,609 + HMPREF1058_RS14585 0.25 +1.9 1,164,610 - HMPREF1058_RS14585 0.26 +0.8 1,164,640 - HMPREF1058_RS14585 0.27 +0.1 1,164,717 - HMPREF1058_RS14585 0.31 +0.6
Or see this region's nucleotide sequence