Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13345

Experiment: D-Mannose 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 10 mM (C)
1,524,583	-		HMPREF1058_RS13350	0.26	+0.9
1,524,623	-		HMPREF1058_RS13350	0.29	+2.0
1,524,624	+		HMPREF1058_RS13350	0.29	+1.1
1,524,627	+		HMPREF1058_RS13350	0.29	+0.8
1,524,693	+		HMPREF1058_RS13350	0.34	+0.2
1,524,694	-		HMPREF1058_RS13350	0.34	+2.4
1,524,694	-		HMPREF1058_RS13350	0.34	+2.6
1,524,758	-		HMPREF1058_RS13350	0.39	+1.2
1,524,777	+		HMPREF1058_RS13350	0.41	+0.1
1,524,826	+		HMPREF1058_RS13350	0.44	-0.2
1,524,841	+		HMPREF1058_RS13350	0.45	+1.5
1,524,870	-		HMPREF1058_RS13350	0.48	+1.7
1,524,918	+		HMPREF1058_RS13350	0.51	+1.8
1,524,971	+		HMPREF1058_RS13350	0.55	+0.5
1,524,971	+		HMPREF1058_RS13350	0.55	+1.8
1,524,972	-		HMPREF1058_RS13350	0.55	+1.5
1,524,984	-		HMPREF1058_RS13350	0.56	+1.0
1,525,056	+		HMPREF1058_RS13350	0.61	+1.3
1,525,063	+		HMPREF1058_RS13350	0.62	+0.6
1,525,231	+		HMPREF1058_RS13350	0.74	+1.3
1,525,298	-		HMPREF1058_RS13350	0.79	+0.8
1,525,298	-		HMPREF1058_RS13350	0.79	+1.4
1,525,298	-		HMPREF1058_RS13350	0.79	+1.1
1,525,336	-				+0.7
1,525,490	-				+1.7
1,525,490	-				+2.3
1,525,524	+				-1.2
1,525,525	-				+1.4
1,525,537	+				-1.8
1,525,538	-				+2.2
1,525,578	-				-0.2
1,525,643	+				+0.2
1,525,644	-				-0.1
1,525,644	-				-1.1
1,525,666	+				+0.5
1,525,666	+				+0.3
1,525,680	+				-0.7
1,525,680	+				-0.3
1,525,726	-		HMPREF1058_RS13345	0.11	+0.9
1,525,821	-		HMPREF1058_RS13345	0.17	+2.9
1,525,845	-		HMPREF1058_RS13345	0.19	+2.1
1,525,854	+		HMPREF1058_RS13345	0.19	-0.8
1,525,855	-		HMPREF1058_RS13345	0.19	-0.4
1,525,929	+		HMPREF1058_RS13345	0.24	-1.3
1,525,930	-		HMPREF1058_RS13345	0.25	-0.1
1,525,932	-		HMPREF1058_RS13345	0.25	+0.2
1,525,932	-		HMPREF1058_RS13345	0.25	+0.5
1,525,968	+		HMPREF1058_RS13345	0.27	-1.0
1,526,051	+		HMPREF1058_RS13345	0.33	+0.1
1,526,091	-		HMPREF1058_RS13345	0.36	+1.1
1,526,130	+		HMPREF1058_RS13345	0.38	-0.9
1,526,135	-		HMPREF1058_RS13345	0.39	-0.2
1,526,160	+		HMPREF1058_RS13345	0.40	-0.3
1,526,161	-		HMPREF1058_RS13345	0.40	-0.1
1,526,201	+		HMPREF1058_RS13345	0.43	+1.0
1,526,254	-		HMPREF1058_RS13345	0.47	-0.7
1,526,282	+		HMPREF1058_RS13345	0.49	-0.4
1,526,283	-		HMPREF1058_RS13345	0.49	+0.9
1,526,283	-		HMPREF1058_RS13345	0.49	+0.8
1,526,283	-		HMPREF1058_RS13345	0.49	+0.1
1,526,289	+		HMPREF1058_RS13345	0.49	+0.2
1,526,291	+		HMPREF1058_RS13345	0.49	+0.6
1,526,292	-		HMPREF1058_RS13345	0.49	-0.4
1,526,296	-		HMPREF1058_RS13345	0.50	+0.5
1,526,320	-		HMPREF1058_RS13345	0.51	-0.1
1,526,338	+		HMPREF1058_RS13345	0.53	+1.9
1,526,339	-		HMPREF1058_RS13345	0.53	+0.5
1,526,383	-		HMPREF1058_RS13345	0.56	-0.9
1,526,446	-		HMPREF1058_RS13345	0.60	+0.4
1,526,543	-		HMPREF1058_RS13345	0.67	+0.3
1,526,574	-		HMPREF1058_RS13345	0.69	+1.3
1,526,635	-		HMPREF1058_RS13345	0.73	+0.6
1,526,636	+		HMPREF1058_RS13345	0.73	+0.1
1,526,683	-		HMPREF1058_RS13345	0.76	+0.5
1,526,683	-		HMPREF1058_RS13345	0.76	+0.2
1,526,683	-		HMPREF1058_RS13345	0.76	+0.3
1,526,701	-		HMPREF1058_RS13345	0.78	-1.0
1,526,701	-		HMPREF1058_RS13345	0.78	+1.1
1,526,702	+		HMPREF1058_RS13345	0.78	+0.0
1,526,711	+		HMPREF1058_RS13345	0.78	+0.8
1,526,712	-		HMPREF1058_RS13345	0.78	+0.3
1,526,716	-		HMPREF1058_RS13345	0.79	+0.8
1,526,756	+		HMPREF1058_RS13345	0.81	-2.5
1,526,774	+		HMPREF1058_RS13345	0.83	-0.3
1,526,775	-		HMPREF1058_RS13345	0.83	+0.1
1,526,776	+		HMPREF1058_RS13345	0.83	+0.5
1,526,776	+		HMPREF1058_RS13345	0.83	+0.7
1,526,778	+		HMPREF1058_RS13345	0.83	+0.7
1,526,779	-		HMPREF1058_RS13345	0.83	+0.1
1,526,779	-		HMPREF1058_RS13345	0.83	+0.1
1,526,779	-		HMPREF1058_RS13345	0.83	-0.8
1,526,811	+		HMPREF1058_RS13345	0.85	-1.4
1,526,811	+		HMPREF1058_RS13345	0.85	+0.0
1,526,842	+		HMPREF1058_RS13345	0.87	+0.6
1,526,842	+		HMPREF1058_RS13345	0.87	+1.0
1,526,874	-		HMPREF1058_RS13345	0.89	+0.8
1,526,943	-				+0.8
1,526,978	+				+0.7
1,527,058	-				-0.1
1,527,061	+				+0.4
1,527,135	+				+1.9
1,527,155	+				+0.2
1,527,155	+				-0.8
1,527,155	+				-0.5
1,527,155	+				-0.6
1,527,156	-				+0.4
1,527,156	-				-0.4
1,527,156	-				+0.3
1,527,158	-				+0.7
1,527,159	+				-0.9
1,527,159	+				-1.3
1,527,164	+				-1.2
1,527,168	-		HMPREF1058_RS13340	0.10	-0.1
1,527,168	-		HMPREF1058_RS13340	0.10	+0.7
1,527,180	+		HMPREF1058_RS13340	0.13	-0.8
1,527,312	+		HMPREF1058_RS13340	0.48	-1.7
1,527,313	-		HMPREF1058_RS13340	0.48	+0.2
1,527,330	-		HMPREF1058_RS13340	0.53	-0.8
1,527,398	+		HMPREF1058_RS13340	0.71	-0.7
1,527,428	+		HMPREF1058_RS13340	0.79	-1.0
1,527,472	+				-0.4
1,527,473	-				-0.8
1,527,475	+				+0.3
1,527,475	+				-1.2
1,527,475	+				+1.9
1,527,475	+				+0.0
1,527,476	-				+0.8
1,527,477	+				-0.1
1,527,477	+				+3.1
1,527,477	+				-1.7
1,527,478	-				+2.4
1,527,478	-				+0.3
1,527,481	+				-0.4
1,527,482	-				-0.1
1,527,549	-				-1.4
1,527,619	+				-1.8
1,527,619	+				+1.6
1,527,627	+				-0.7
1,527,627	+				+0.5
1,527,628	-				+0.0
1,527,658	-		HMPREF1058_RS13335	0.13	-1.5
1,527,777	+		HMPREF1058_RS13335	0.47	-1.6
1,527,778	-		HMPREF1058_RS13335	0.48	+0.8
1,527,783	-		HMPREF1058_RS13335	0.49	+0.7
1,527,785	+		HMPREF1058_RS13335	0.50	-0.1
1,527,786	-		HMPREF1058_RS13335	0.50	-0.1
1,527,789	+		HMPREF1058_RS13335	0.51	+1.3
1,527,835	-		HMPREF1058_RS13335	0.64	+0.3
1,527,872	+		HMPREF1058_RS13335	0.74	+1.1
1,527,909	+		HMPREF1058_RS13335	0.85	-0.3
1,527,974	+				-0.6
1,527,982	-				-0.2
1,527,982	-				-0.2
1,528,012	+		HMPREF1058_RS13330	0.10	+0.9
1,528,012	+		HMPREF1058_RS13330	0.10	+0.1