Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12350 and HMPREF1058_RS12345 are separated by 327 nucleotides HMPREF1058_RS12345 and HMPREF1058_RS12340 are separated by 73 nucleotides
HMPREF1058_RS12350: HMPREF1058_RS12350 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 126,443 to 128,407
_RS12350
HMPREF1058_RS12345: HMPREF1058_RS12345 - 4-alpha-glucanotransferase, at 128,735 to 131,413
_RS12345
HMPREF1058_RS12340: HMPREF1058_RS12340 - SLC45 family MFS transporter, at 131,487 to 132,842
_RS12340
Position (kb) 128
129
130
131
132 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 128.728 kb on + strand at 128.729 kb on - strand at 128.997 kb on - strand at 128.997 kb on - strand at 129.000 kb on + strand at 129.000 kb on + strand at 129.003 kb on + strand, within HMPREF1058_RS12345 at 129.042 kb on + strand, within HMPREF1058_RS12345 at 129.044 kb on + strand, within HMPREF1058_RS12345 at 129.152 kb on - strand, within HMPREF1058_RS12345 at 129.234 kb on + strand, within HMPREF1058_RS12345 at 129.235 kb on - strand, within HMPREF1058_RS12345 at 129.272 kb on - strand, within HMPREF1058_RS12345 at 129.296 kb on - strand, within HMPREF1058_RS12345 at 129.529 kb on - strand, within HMPREF1058_RS12345 at 129.620 kb on + strand, within HMPREF1058_RS12345 at 129.621 kb on - strand, within HMPREF1058_RS12345 at 129.629 kb on - strand, within HMPREF1058_RS12345 at 129.657 kb on - strand, within HMPREF1058_RS12345 at 129.658 kb on + strand, within HMPREF1058_RS12345 at 129.750 kb on + strand, within HMPREF1058_RS12345 at 129.756 kb on - strand, within HMPREF1058_RS12345 at 129.896 kb on + strand, within HMPREF1058_RS12345 at 129.897 kb on - strand, within HMPREF1058_RS12345 at 129.900 kb on + strand, within HMPREF1058_RS12345 at 129.901 kb on - strand, within HMPREF1058_RS12345 at 129.901 kb on - strand, within HMPREF1058_RS12345 at 129.901 kb on - strand, within HMPREF1058_RS12345 at 129.946 kb on + strand, within HMPREF1058_RS12345 at 129.954 kb on - strand, within HMPREF1058_RS12345 at 129.969 kb on + strand, within HMPREF1058_RS12345 at 130.041 kb on + strand, within HMPREF1058_RS12345 at 130.042 kb on - strand, within HMPREF1058_RS12345 at 130.046 kb on - strand, within HMPREF1058_RS12345 at 130.053 kb on + strand, within HMPREF1058_RS12345 at 130.070 kb on + strand, within HMPREF1058_RS12345 at 130.070 kb on + strand, within HMPREF1058_RS12345 at 130.091 kb on - strand, within HMPREF1058_RS12345 at 130.238 kb on - strand, within HMPREF1058_RS12345 at 130.323 kb on + strand, within HMPREF1058_RS12345 at 130.375 kb on - strand, within HMPREF1058_RS12345 at 130.494 kb on + strand, within HMPREF1058_RS12345 at 130.640 kb on - strand, within HMPREF1058_RS12345 at 130.647 kb on + strand, within HMPREF1058_RS12345 at 130.660 kb on - strand, within HMPREF1058_RS12345 at 130.662 kb on - strand, within HMPREF1058_RS12345 at 130.662 kb on - strand, within HMPREF1058_RS12345 at 130.672 kb on - strand, within HMPREF1058_RS12345 at 130.680 kb on + strand, within HMPREF1058_RS12345 at 130.715 kb on + strand, within HMPREF1058_RS12345 at 130.796 kb on + strand, within HMPREF1058_RS12345 at 130.883 kb on - strand, within HMPREF1058_RS12345 at 130.905 kb on + strand, within HMPREF1058_RS12345 at 130.953 kb on + strand, within HMPREF1058_RS12345 at 131.063 kb on - strand, within HMPREF1058_RS12345 at 131.178 kb on + strand at 131.179 kb on - strand at 131.244 kb on + strand at 131.284 kb on + strand at 131.293 kb on - strand at 131.322 kb on - strand at 131.411 kb on + strand at 131.483 kb on + strand at 131.484 kb on - strand at 131.484 kb on - strand at 131.529 kb on - strand at 131.532 kb on - strand at 131.627 kb on - strand, within HMPREF1058_RS12340 at 131.644 kb on + strand, within HMPREF1058_RS12340 at 131.816 kb on + strand, within HMPREF1058_RS12340 at 131.816 kb on + strand, within HMPREF1058_RS12340 at 131.852 kb on + strand, within HMPREF1058_RS12340 at 132.017 kb on + strand, within HMPREF1058_RS12340 at 132.018 kb on - strand, within HMPREF1058_RS12340 at 132.101 kb on + strand, within HMPREF1058_RS12340 at 132.148 kb on - strand, within HMPREF1058_RS12340 at 132.188 kb on + strand, within HMPREF1058_RS12340 at 132.188 kb on + strand, within HMPREF1058_RS12340 at 132.361 kb on + strand, within HMPREF1058_RS12340 at 132.384 kb on + strand, within HMPREF1058_RS12340
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 128,728 + -1.3 128,729 - -0.1 128,997 - -2.6 128,997 - -1.7 129,000 + -2.6 129,000 + -2.6 129,003 + HMPREF1058_RS12345 0.10 -0.2 129,042 + HMPREF1058_RS12345 0.11 -1.9 129,044 + HMPREF1058_RS12345 0.12 -1.8 129,152 - HMPREF1058_RS12345 0.16 -2.1 129,234 + HMPREF1058_RS12345 0.19 -2.1 129,235 - HMPREF1058_RS12345 0.19 -2.2 129,272 - HMPREF1058_RS12345 0.20 -1.3 129,296 - HMPREF1058_RS12345 0.21 -2.8 129,529 - HMPREF1058_RS12345 0.30 -2.0 129,620 + HMPREF1058_RS12345 0.33 -2.1 129,621 - HMPREF1058_RS12345 0.33 -2.5 129,629 - HMPREF1058_RS12345 0.33 -1.9 129,657 - HMPREF1058_RS12345 0.34 +1.2 129,658 + HMPREF1058_RS12345 0.34 -0.6 129,750 + HMPREF1058_RS12345 0.38 -1.9 129,756 - HMPREF1058_RS12345 0.38 -0.9 129,896 + HMPREF1058_RS12345 0.43 -2.9 129,897 - HMPREF1058_RS12345 0.43 -1.7 129,900 + HMPREF1058_RS12345 0.43 -2.6 129,901 - HMPREF1058_RS12345 0.44 -0.7 129,901 - HMPREF1058_RS12345 0.44 -2.5 129,901 - HMPREF1058_RS12345 0.44 -0.9 129,946 + HMPREF1058_RS12345 0.45 -1.6 129,954 - HMPREF1058_RS12345 0.46 -2.5 129,969 + HMPREF1058_RS12345 0.46 -1.6 130,041 + HMPREF1058_RS12345 0.49 -0.3 130,042 - HMPREF1058_RS12345 0.49 -3.9 130,046 - HMPREF1058_RS12345 0.49 -0.4 130,053 + HMPREF1058_RS12345 0.49 -2.2 130,070 + HMPREF1058_RS12345 0.50 -1.2 130,070 + HMPREF1058_RS12345 0.50 -1.6 130,091 - HMPREF1058_RS12345 0.51 +0.1 130,238 - HMPREF1058_RS12345 0.56 -1.4 130,323 + HMPREF1058_RS12345 0.59 -2.0 130,375 - HMPREF1058_RS12345 0.61 -3.8 130,494 + HMPREF1058_RS12345 0.66 -1.9 130,640 - HMPREF1058_RS12345 0.71 -1.3 130,647 + HMPREF1058_RS12345 0.71 -1.6 130,660 - HMPREF1058_RS12345 0.72 -1.9 130,662 - HMPREF1058_RS12345 0.72 +0.9 130,662 - HMPREF1058_RS12345 0.72 -1.4 130,672 - HMPREF1058_RS12345 0.72 -1.2 130,680 + HMPREF1058_RS12345 0.73 -0.2 130,715 + HMPREF1058_RS12345 0.74 -0.6 130,796 + HMPREF1058_RS12345 0.77 -4.8 130,883 - HMPREF1058_RS12345 0.80 -1.7 130,905 + HMPREF1058_RS12345 0.81 -1.0 130,953 + HMPREF1058_RS12345 0.83 -0.9 131,063 - HMPREF1058_RS12345 0.87 -1.6 131,178 + -2.3 131,179 - -3.5 131,244 + -3.3 131,284 + -0.1 131,293 - -2.1 131,322 - -4.7 131,411 + +0.8 131,483 + +1.9 131,484 - +1.1 131,484 - -1.7 131,529 - -1.0 131,532 - -1.4 131,627 - HMPREF1058_RS12340 0.10 -0.4 131,644 + HMPREF1058_RS12340 0.12 +1.0 131,816 + HMPREF1058_RS12340 0.24 -0.6 131,816 + HMPREF1058_RS12340 0.24 -0.3 131,852 + HMPREF1058_RS12340 0.27 -1.0 132,017 + HMPREF1058_RS12340 0.39 -0.2 132,018 - HMPREF1058_RS12340 0.39 -1.4 132,101 + HMPREF1058_RS12340 0.45 -0.2 132,148 - HMPREF1058_RS12340 0.49 -1.7 132,188 + HMPREF1058_RS12340 0.52 -0.9 132,188 + HMPREF1058_RS12340 0.52 -1.7 132,361 + HMPREF1058_RS12340 0.64 +1.8 132,384 + HMPREF1058_RS12340 0.66 -0.4
Or see this region's nucleotide sequence