Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12110 and HMPREF1058_RS12105 are separated by 41 nucleotides HMPREF1058_RS12105 and HMPREF1058_RS12100 overlap by 4 nucleotides
HMPREF1058_RS12110: HMPREF1058_RS12110 - biosynthetic arginine decarboxylase, at 197,858 to 199,750
_RS12110
HMPREF1058_RS12105: HMPREF1058_RS12105 - shikimate kinase, at 199,792 to 200,319
_RS12105
HMPREF1058_RS12100: HMPREF1058_RS12100 - type I DNA topoisomerase, at 200,316 to 202,754
_RS12100
Position (kb) 199
200
201 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 198.809 kb on - strand, within HMPREF1058_RS12110 at 198.822 kb on + strand, within HMPREF1058_RS12110 at 198.837 kb on + strand, within HMPREF1058_RS12110 at 198.838 kb on - strand, within HMPREF1058_RS12110 at 199.010 kb on + strand at 199.011 kb on - strand, within HMPREF1058_RS12110 at 199.012 kb on + strand, within HMPREF1058_RS12110 at 199.168 kb on + strand, within HMPREF1058_RS12110 at 199.173 kb on - strand, within HMPREF1058_RS12110 at 199.178 kb on - strand, within HMPREF1058_RS12110 at 199.178 kb on - strand, within HMPREF1058_RS12110 at 199.308 kb on + strand, within HMPREF1058_RS12110 at 199.487 kb on - strand, within HMPREF1058_RS12110 at 199.488 kb on + strand, within HMPREF1058_RS12110 at 199.513 kb on + strand, within HMPREF1058_RS12110 at 199.537 kb on + strand, within HMPREF1058_RS12110 at 199.573 kb on + strand at 199.574 kb on - strand at 199.574 kb on - strand at 199.659 kb on - strand at 199.713 kb on + strand at 199.713 kb on + strand at 199.775 kb on + strand at 199.776 kb on - strand at 199.785 kb on + strand at 199.785 kb on + strand at 199.786 kb on - strand at 199.787 kb on + strand at 199.789 kb on + strand at 199.790 kb on - strand at 199.793 kb on + strand at 199.797 kb on + strand at 199.846 kb on - strand, within HMPREF1058_RS12105 at 200.049 kb on + strand, within HMPREF1058_RS12105 at 200.050 kb on - strand, within HMPREF1058_RS12105 at 200.051 kb on + strand, within HMPREF1058_RS12105 at 200.051 kb on + strand, within HMPREF1058_RS12105 at 200.052 kb on - strand, within HMPREF1058_RS12105 at 200.196 kb on + strand, within HMPREF1058_RS12105 at 200.269 kb on + strand at 200.294 kb on + strand at 200.294 kb on + strand at 200.295 kb on - strand at 200.299 kb on + strand at 200.302 kb on + strand at 200.310 kb on + strand at 200.310 kb on + strand at 200.310 kb on + strand at 200.343 kb on + strand at 200.442 kb on - strand at 200.558 kb on - strand at 200.643 kb on - strand, within HMPREF1058_RS12100 at 200.735 kb on - strand, within HMPREF1058_RS12100
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 198,809 - HMPREF1058_RS12110 0.50 +0.4 198,822 + HMPREF1058_RS12110 0.51 -2.9 198,837 + HMPREF1058_RS12110 0.52 -2.5 198,838 - HMPREF1058_RS12110 0.52 +0.1 199,010 + +1.9 199,011 - HMPREF1058_RS12110 0.61 +0.1 199,012 + HMPREF1058_RS12110 0.61 -2.5 199,168 + HMPREF1058_RS12110 0.69 -4.2 199,173 - HMPREF1058_RS12110 0.69 -0.0 199,178 - HMPREF1058_RS12110 0.70 +0.5 199,178 - HMPREF1058_RS12110 0.70 +0.5 199,308 + HMPREF1058_RS12110 0.77 -1.5 199,487 - HMPREF1058_RS12110 0.86 -1.2 199,488 + HMPREF1058_RS12110 0.86 -2.5 199,513 + HMPREF1058_RS12110 0.87 -3.7 199,537 + HMPREF1058_RS12110 0.89 -2.1 199,573 + -2.1 199,574 - -0.9 199,574 - +0.2 199,659 - -0.2 199,713 + -6.4 199,713 + -5.5 199,775 + -3.2 199,776 - +1.9 199,785 + -3.8 199,785 + -5.9 199,786 - -0.9 199,787 + -6.0 199,789 + -3.2 199,790 - -1.4 199,793 + -4.2 199,797 + -3.7 199,846 - HMPREF1058_RS12105 0.10 -3.5 200,049 + HMPREF1058_RS12105 0.49 -3.3 200,050 - HMPREF1058_RS12105 0.49 -5.8 200,051 + HMPREF1058_RS12105 0.49 -1.5 200,051 + HMPREF1058_RS12105 0.49 -4.4 200,052 - HMPREF1058_RS12105 0.49 -2.9 200,196 + HMPREF1058_RS12105 0.77 -1.9 200,269 + -2.8 200,294 + -3.4 200,294 + -2.9 200,295 - -4.9 200,299 + -3.4 200,302 + -0.1 200,310 + -4.9 200,310 + -2.7 200,310 + -5.1 200,343 + -0.1 200,442 - -0.3 200,558 - -2.1 200,643 - HMPREF1058_RS12100 0.13 -1.9 200,735 - HMPREF1058_RS12100 0.17 -1.4
Or see this region's nucleotide sequence