Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11630 and HMPREF1058_RS11625 are separated by 103 nucleotides HMPREF1058_RS11625 and HMPREF1058_RS11620 are separated by 2 nucleotides HMPREF1058_RS11620 and HMPREF1058_RS11615 are separated by 17 nucleotides
HMPREF1058_RS11630: HMPREF1058_RS11630 - phosphatase PAP2 family protein, at 331,029 to 331,640
_RS11630
HMPREF1058_RS11625: HMPREF1058_RS11625 - S41 family peptidase, at 331,744 to 333,345
_RS11625
HMPREF1058_RS11620: HMPREF1058_RS11620 - pantetheine-phosphate adenylyltransferase, at 333,348 to 333,803
_RS11620
HMPREF1058_RS11615: HMPREF1058_RS11615 - type IIA DNA topoisomerase subunit B, at 333,821 to 335,698
_RS11615
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 330.758 kb on + strand at 330.759 kb on - strand at 330.760 kb on + strand at 330.789 kb on + strand at 330.793 kb on - strand at 330.882 kb on - strand at 330.882 kb on - strand at 330.883 kb on + strand at 330.930 kb on - strand at 331.138 kb on + strand, within HMPREF1058_RS11630 at 331.196 kb on + strand, within HMPREF1058_RS11630 at 331.197 kb on - strand, within HMPREF1058_RS11630 at 331.197 kb on - strand, within HMPREF1058_RS11630 at 331.257 kb on + strand, within HMPREF1058_RS11630 at 331.262 kb on - strand, within HMPREF1058_RS11630 at 331.262 kb on - strand, within HMPREF1058_RS11630 at 331.292 kb on + strand, within HMPREF1058_RS11630 at 331.292 kb on + strand, within HMPREF1058_RS11630 at 331.297 kb on - strand, within HMPREF1058_RS11630 at 331.310 kb on + strand, within HMPREF1058_RS11630 at 331.312 kb on + strand, within HMPREF1058_RS11630 at 331.316 kb on - strand, within HMPREF1058_RS11630 at 331.337 kb on - strand, within HMPREF1058_RS11630 at 331.363 kb on - strand, within HMPREF1058_RS11630 at 331.450 kb on - strand, within HMPREF1058_RS11630 at 331.462 kb on - strand, within HMPREF1058_RS11630 at 331.462 kb on - strand, within HMPREF1058_RS11630 at 331.590 kb on + strand at 331.591 kb on - strand at 331.610 kb on + strand at 331.634 kb on - strand at 331.664 kb on + strand at 331.712 kb on + strand at 331.732 kb on - strand at 331.734 kb on - strand at 331.827 kb on + strand at 331.842 kb on - strand at 331.859 kb on - strand at 331.929 kb on + strand, within HMPREF1058_RS11625 at 332.003 kb on + strand, within HMPREF1058_RS11625 at 332.004 kb on - strand, within HMPREF1058_RS11625 at 332.004 kb on - strand, within HMPREF1058_RS11625 at 332.025 kb on - strand, within HMPREF1058_RS11625 at 332.112 kb on - strand, within HMPREF1058_RS11625 at 332.174 kb on + strand, within HMPREF1058_RS11625 at 332.177 kb on - strand, within HMPREF1058_RS11625 at 332.177 kb on - strand, within HMPREF1058_RS11625 at 332.193 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.260 kb on - strand, within HMPREF1058_RS11625 at 332.260 kb on - strand, within HMPREF1058_RS11625 at 332.303 kb on + strand, within HMPREF1058_RS11625 at 332.335 kb on - strand, within HMPREF1058_RS11625 at 332.339 kb on + strand, within HMPREF1058_RS11625 at 332.623 kb on - strand, within HMPREF1058_RS11625 at 332.760 kb on + strand, within HMPREF1058_RS11625 at 332.760 kb on + strand, within HMPREF1058_RS11625 at 332.784 kb on + strand, within HMPREF1058_RS11625 at 332.787 kb on - strand, within HMPREF1058_RS11625 at 332.913 kb on + strand, within HMPREF1058_RS11625 at 332.916 kb on + strand, within HMPREF1058_RS11625 at 332.917 kb on - strand, within HMPREF1058_RS11625 at 332.935 kb on + strand, within HMPREF1058_RS11625 at 332.952 kb on + strand, within HMPREF1058_RS11625 at 333.054 kb on + strand, within HMPREF1058_RS11625 at 333.061 kb on + strand, within HMPREF1058_RS11625 at 333.133 kb on - strand, within HMPREF1058_RS11625 at 333.206 kb on - strand at 333.246 kb on + strand at 333.333 kb on + strand at 333.333 kb on + strand at 333.334 kb on - strand at 333.336 kb on + strand at 333.336 kb on + strand at 333.336 kb on + strand at 333.338 kb on + strand at 333.339 kb on - strand at 333.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 330,758 + +0.3 330,759 - +1.0 330,760 + +0.9 330,789 + +0.4 330,793 - +1.2 330,882 - +0.3 330,882 - -0.1 330,883 + +5.0 330,930 - -0.1 331,138 + HMPREF1058_RS11630 0.18 +0.0 331,196 + HMPREF1058_RS11630 0.27 +0.1 331,197 - HMPREF1058_RS11630 0.27 -2.1 331,197 - HMPREF1058_RS11630 0.27 -0.3 331,257 + HMPREF1058_RS11630 0.37 -0.2 331,262 - HMPREF1058_RS11630 0.38 -0.4 331,262 - HMPREF1058_RS11630 0.38 +0.7 331,292 + HMPREF1058_RS11630 0.43 -1.9 331,292 + HMPREF1058_RS11630 0.43 -1.4 331,297 - HMPREF1058_RS11630 0.44 -0.5 331,310 + HMPREF1058_RS11630 0.46 +0.9 331,312 + HMPREF1058_RS11630 0.46 -0.6 331,316 - HMPREF1058_RS11630 0.47 +0.3 331,337 - HMPREF1058_RS11630 0.50 +4.4 331,363 - HMPREF1058_RS11630 0.55 -0.1 331,450 - HMPREF1058_RS11630 0.69 -0.4 331,462 - HMPREF1058_RS11630 0.71 -1.1 331,462 - HMPREF1058_RS11630 0.71 -0.2 331,590 + -0.7 331,591 - +1.4 331,610 + -0.3 331,634 - +0.1 331,664 + -0.2 331,712 + -1.4 331,732 - -2.1 331,734 - -0.0 331,827 + -3.0 331,842 - -1.9 331,859 - -3.2 331,929 + HMPREF1058_RS11625 0.12 -3.8 332,003 + HMPREF1058_RS11625 0.16 -3.4 332,004 - HMPREF1058_RS11625 0.16 -3.8 332,004 - HMPREF1058_RS11625 0.16 -3.5 332,025 - HMPREF1058_RS11625 0.18 -6.2 332,112 - HMPREF1058_RS11625 0.23 -4.8 332,174 + HMPREF1058_RS11625 0.27 -5.0 332,177 - HMPREF1058_RS11625 0.27 +0.9 332,177 - HMPREF1058_RS11625 0.27 -3.6 332,193 + HMPREF1058_RS11625 0.28 -0.9 332,259 + HMPREF1058_RS11625 0.32 -4.8 332,259 + HMPREF1058_RS11625 0.32 -4.0 332,259 + HMPREF1058_RS11625 0.32 -4.5 332,259 + HMPREF1058_RS11625 0.32 -3.6 332,259 + HMPREF1058_RS11625 0.32 -2.5 332,260 - HMPREF1058_RS11625 0.32 -4.5 332,260 - HMPREF1058_RS11625 0.32 -2.8 332,303 + HMPREF1058_RS11625 0.35 -3.4 332,335 - HMPREF1058_RS11625 0.37 -2.8 332,339 + HMPREF1058_RS11625 0.37 -2.8 332,623 - HMPREF1058_RS11625 0.55 +0.3 332,760 + HMPREF1058_RS11625 0.63 -3.1 332,760 + HMPREF1058_RS11625 0.63 -3.2 332,784 + HMPREF1058_RS11625 0.65 -3.5 332,787 - HMPREF1058_RS11625 0.65 -4.3 332,913 + HMPREF1058_RS11625 0.73 -2.5 332,916 + HMPREF1058_RS11625 0.73 -4.9 332,917 - HMPREF1058_RS11625 0.73 -3.4 332,935 + HMPREF1058_RS11625 0.74 -0.9 332,952 + HMPREF1058_RS11625 0.75 -2.9 333,054 + HMPREF1058_RS11625 0.82 -4.0 333,061 + HMPREF1058_RS11625 0.82 -3.4 333,133 - HMPREF1058_RS11625 0.87 -2.4 333,206 - -3.6 333,246 + -3.9 333,333 + -2.4 333,333 + -2.2 333,334 - -2.6 333,336 + -3.1 333,336 + -3.6 333,336 + -3.1 333,338 + -5.5 333,339 - -2.2 333,339 - -2.6
Or see this region's nucleotide sequence