Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11375

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11385 and HMPREF1058_RS11380 are separated by 4 nucleotidesHMPREF1058_RS11380 and HMPREF1058_RS11375 overlap by 4 nucleotidesHMPREF1058_RS11375 and HMPREF1058_RS11370 are separated by 114 nucleotides HMPREF1058_RS11385: HMPREF1058_RS11385 - uroporphyrinogen-III synthase, at 391,221 to 391,970 _RS11385 HMPREF1058_RS11380: HMPREF1058_RS11380 - DUF4271 domain-containing protein, at 391,975 to 392,787 _RS11380 HMPREF1058_RS11375: HMPREF1058_RS11375 - TIGR00730 family Rossman fold protein, at 392,784 to 393,370 _RS11375 HMPREF1058_RS11370: HMPREF1058_RS11370 - methionine adenosyltransferase, at 393,485 to 394,777 _RS11370 Position (kb) 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 392.193 kb on - strand, within HMPREF1058_RS11380at 392.344 kb on + strand, within HMPREF1058_RS11380at 392.349 kb on - strand, within HMPREF1058_RS11380at 392.349 kb on - strand, within HMPREF1058_RS11380at 392.357 kb on + strand, within HMPREF1058_RS11380at 392.425 kb on + strand, within HMPREF1058_RS11380at 392.427 kb on - strand, within HMPREF1058_RS11380at 392.475 kb on + strand, within HMPREF1058_RS11380at 392.476 kb on - strand, within HMPREF1058_RS11380at 392.476 kb on - strand, within HMPREF1058_RS11380at 392.688 kb on + strand, within HMPREF1058_RS11380at 392.742 kb on - strandat 392.831 kb on + strandat 392.831 kb on + strandat 392.831 kb on + strandat 392.832 kb on - strandat 392.980 kb on + strand, within HMPREF1058_RS11375at 393.287 kb on + strand, within HMPREF1058_RS11375at 393.340 kb on + strandat 393.342 kb on + strandat 393.343 kb on - strandat 393.343 kb on - strandat 393.345 kb on - strandat 393.350 kb on + strandat 393.350 kb on + strandat 393.362 kb on - strandat 393.370 kb on + strandat 393.371 kb on - strandat 393.371 kb on - strandat 393.372 kb on + strandat 393.373 kb on - strandat 393.459 kb on + strandat 393.459 kb on + strandat 393.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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392,193 - HMPREF1058_RS11380 0.27 -2.6
392,344 + HMPREF1058_RS11380 0.45 -1.7
392,349 - HMPREF1058_RS11380 0.46 +0.2
392,349 - HMPREF1058_RS11380 0.46 -2.1
392,357 + HMPREF1058_RS11380 0.47 -0.7
392,425 + HMPREF1058_RS11380 0.55 -1.4
392,427 - HMPREF1058_RS11380 0.56 -1.5
392,475 + HMPREF1058_RS11380 0.62 -2.2
392,476 - HMPREF1058_RS11380 0.62 -1.0
392,476 - HMPREF1058_RS11380 0.62 -0.7
392,688 + HMPREF1058_RS11380 0.88 -2.8
392,742 - -0.3
392,831 + -0.3
392,831 + -2.8
392,831 + +0.2
392,832 - -0.8
392,980 + HMPREF1058_RS11375 0.33 -2.5
393,287 + HMPREF1058_RS11375 0.86 -2.1
393,340 + -0.4
393,342 + -0.1
393,343 - -0.1
393,343 - +0.5
393,345 - +0.3
393,350 + +0.6
393,350 + +1.1
393,362 - -0.2
393,370 + +0.0
393,371 - -0.6
393,371 - -0.6
393,372 + +0.7
393,373 - +0.0
393,459 + +0.6
393,459 + +3.4
393,460 - +2.1

Or see this region's nucleotide sequence