Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11045 and HMPREF1058_RS11040 are separated by 63 nucleotides HMPREF1058_RS11040 and HMPREF1058_RS11035 are separated by 70 nucleotides
HMPREF1058_RS11045: HMPREF1058_RS11045 - DUF4861 domain-containing protein, at 491,979 to 493,151
_RS11045
HMPREF1058_RS11040: HMPREF1058_RS11040 - polysaccharide deacetylase family protein, at 493,215 to 493,826
_RS11040
HMPREF1058_RS11035: HMPREF1058_RS11035 - DUF2723 domain-containing protein, at 493,897 to 497,301
_RS11035
Position (kb) 493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 492.257 kb on + strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.496 kb on + strand, within HMPREF1058_RS11045 at 492.497 kb on - strand, within HMPREF1058_RS11045 at 492.575 kb on + strand, within HMPREF1058_RS11045 at 492.575 kb on + strand, within HMPREF1058_RS11045 at 492.591 kb on + strand, within HMPREF1058_RS11045 at 492.671 kb on - strand, within HMPREF1058_RS11045 at 492.821 kb on + strand, within HMPREF1058_RS11045 at 492.822 kb on - strand, within HMPREF1058_RS11045 at 492.846 kb on - strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.848 kb on - strand at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.897 kb on + strand, within HMPREF1058_RS11045 at 492.902 kb on - strand, within HMPREF1058_RS11045 at 493.036 kb on - strand at 493.063 kb on - strand at 493.095 kb on + strand at 493.096 kb on - strand at 493.107 kb on + strand at 493.108 kb on - strand at 493.124 kb on + strand at 493.125 kb on - strand at 493.125 kb on - strand at 493.157 kb on - strand at 493.158 kb on + strand at 493.159 kb on - strand at 493.159 kb on - strand at 493.174 kb on + strand at 493.181 kb on - strand at 493.182 kb on + strand at 493.204 kb on - strand at 493.279 kb on + strand, within HMPREF1058_RS11040 at 493.342 kb on + strand, within HMPREF1058_RS11040 at 493.389 kb on - strand, within HMPREF1058_RS11040 at 493.447 kb on + strand, within HMPREF1058_RS11040 at 493.447 kb on + strand, within HMPREF1058_RS11040 at 493.447 kb on + strand, within HMPREF1058_RS11040 at 493.448 kb on - strand, within HMPREF1058_RS11040 at 493.532 kb on - strand, within HMPREF1058_RS11040 at 493.603 kb on - strand, within HMPREF1058_RS11040 at 493.675 kb on + strand, within HMPREF1058_RS11040 at 493.676 kb on - strand, within HMPREF1058_RS11040 at 493.686 kb on + strand, within HMPREF1058_RS11040 at 493.742 kb on - strand, within HMPREF1058_RS11040 at 493.818 kb on + strand at 493.819 kb on - strand at 493.860 kb on - strand at 493.860 kb on - strand at 493.894 kb on + strand at 493.943 kb on + strand at 493.943 kb on + strand at 493.944 kb on - strand at 494.015 kb on - strand at 494.015 kb on - strand at 494.142 kb on - strand at 494.142 kb on - strand at 494.142 kb on - strand at 494.142 kb on - strand at 494.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 492,257 + HMPREF1058_RS11045 0.24 -0.7 492,258 - HMPREF1058_RS11045 0.24 -0.7 492,258 - HMPREF1058_RS11045 0.24 -0.5 492,258 - HMPREF1058_RS11045 0.24 -0.5 492,258 - HMPREF1058_RS11045 0.24 -0.1 492,496 + HMPREF1058_RS11045 0.44 -0.2 492,497 - HMPREF1058_RS11045 0.44 -0.3 492,575 + HMPREF1058_RS11045 0.51 -0.2 492,575 + HMPREF1058_RS11045 0.51 -0.3 492,591 + HMPREF1058_RS11045 0.52 -1.6 492,671 - HMPREF1058_RS11045 0.59 -0.5 492,821 + HMPREF1058_RS11045 0.72 +0.5 492,822 - HMPREF1058_RS11045 0.72 -2.6 492,846 - HMPREF1058_RS11045 0.74 +0.1 492,847 + HMPREF1058_RS11045 0.74 +0.4 492,847 + HMPREF1058_RS11045 0.74 -0.4 492,847 + HMPREF1058_RS11045 0.74 +0.1 492,847 + HMPREF1058_RS11045 0.74 -1.4 492,847 + HMPREF1058_RS11045 0.74 -0.2 492,848 - HMPREF1058_RS11045 0.74 +0.4 492,848 - HMPREF1058_RS11045 0.74 -0.6 492,848 - HMPREF1058_RS11045 0.74 +0.4 492,848 - +0.4 492,848 - HMPREF1058_RS11045 0.74 +0.0 492,897 + HMPREF1058_RS11045 0.78 -0.0 492,902 - HMPREF1058_RS11045 0.79 +0.3 493,036 - -1.9 493,063 - -0.3 493,095 + -0.5 493,096 - -0.6 493,107 + -0.6 493,108 - -0.1 493,124 + +1.0 493,125 - -1.7 493,125 - -1.3 493,157 - +0.8 493,158 + -0.2 493,159 - -0.2 493,159 - -1.1 493,174 + -1.3 493,181 - +0.5 493,182 + +0.4 493,204 - -2.9 493,279 + HMPREF1058_RS11040 0.10 -1.5 493,342 + HMPREF1058_RS11040 0.21 -3.0 493,389 - HMPREF1058_RS11040 0.28 -4.6 493,447 + HMPREF1058_RS11040 0.38 -1.5 493,447 + HMPREF1058_RS11040 0.38 -4.4 493,447 + HMPREF1058_RS11040 0.38 -2.8 493,448 - HMPREF1058_RS11040 0.38 -2.6 493,532 - HMPREF1058_RS11040 0.52 -1.2 493,603 - HMPREF1058_RS11040 0.63 -2.6 493,675 + HMPREF1058_RS11040 0.75 -4.0 493,676 - HMPREF1058_RS11040 0.75 -3.3 493,686 + HMPREF1058_RS11040 0.77 -0.1 493,742 - HMPREF1058_RS11040 0.86 -3.6 493,818 + -4.3 493,819 - -1.3 493,860 - -0.2 493,860 - -0.3 493,894 + -3.2 493,943 + -3.8 493,943 + -1.1 493,944 - +0.0 494,015 - -2.4 494,015 - -3.6 494,142 - -1.5 494,142 - -1.2 494,142 - -2.7 494,142 - -1.9 494,142 - -1.3
Or see this region's nucleotide sequence