Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10970 and HMPREF1058_RS10965 are separated by 91 nucleotides HMPREF1058_RS10965 and HMPREF1058_RS10960 are separated by 10 nucleotides
HMPREF1058_RS10970: HMPREF1058_RS10970 - ribonuclease R, at 513,125 to 515,272
_RS10970
HMPREF1058_RS10965: HMPREF1058_RS10965 - cation transporter, at 515,364 to 516,305
_RS10965
HMPREF1058_RS10960: HMPREF1058_RS10960 - NAD(P)-dependent oxidoreductase, at 516,316 to 517,362
_RS10960
Position (kb) 515
516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 514.391 kb on + strand, within HMPREF1058_RS10970 at 514.401 kb on - strand, within HMPREF1058_RS10970 at 514.568 kb on + strand, within HMPREF1058_RS10970 at 514.568 kb on + strand, within HMPREF1058_RS10970 at 514.568 kb on + strand, within HMPREF1058_RS10970 at 514.569 kb on - strand, within HMPREF1058_RS10970 at 514.569 kb on - strand, within HMPREF1058_RS10970 at 514.569 kb on - strand, within HMPREF1058_RS10970 at 514.572 kb on + strand, within HMPREF1058_RS10970 at 514.572 kb on + strand, within HMPREF1058_RS10970 at 514.573 kb on - strand, within HMPREF1058_RS10970 at 514.732 kb on + strand, within HMPREF1058_RS10970 at 514.751 kb on - strand, within HMPREF1058_RS10970 at 514.826 kb on - strand, within HMPREF1058_RS10970 at 514.826 kb on - strand, within HMPREF1058_RS10970 at 514.905 kb on - strand, within HMPREF1058_RS10970 at 514.955 kb on - strand, within HMPREF1058_RS10970 at 515.003 kb on - strand, within HMPREF1058_RS10970 at 515.122 kb on + strand at 515.123 kb on - strand at 515.134 kb on + strand at 515.134 kb on + strand at 515.135 kb on - strand at 515.138 kb on - strand at 515.283 kb on - strand at 515.283 kb on - strand at 515.283 kb on - strand at 515.283 kb on - strand at 515.287 kb on - strand at 515.293 kb on + strand at 515.293 kb on + strand at 515.294 kb on - strand at 515.337 kb on - strand at 515.340 kb on + strand at 515.341 kb on - strand at 515.390 kb on + strand at 515.450 kb on + strand at 515.450 kb on + strand at 515.597 kb on + strand, within HMPREF1058_RS10965 at 515.597 kb on + strand, within HMPREF1058_RS10965 at 515.597 kb on + strand, within HMPREF1058_RS10965 at 515.675 kb on + strand, within HMPREF1058_RS10965 at 516.088 kb on + strand, within HMPREF1058_RS10965 at 516.088 kb on + strand, within HMPREF1058_RS10965 at 516.167 kb on + strand, within HMPREF1058_RS10965 at 516.167 kb on + strand, within HMPREF1058_RS10965 at 516.169 kb on + strand, within HMPREF1058_RS10965 at 516.169 kb on + strand, within HMPREF1058_RS10965 at 516.179 kb on + strand, within HMPREF1058_RS10965 at 516.181 kb on + strand, within HMPREF1058_RS10965 at 516.209 kb on + strand, within HMPREF1058_RS10965 at 516.242 kb on + strand at 516.242 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 514,391 + HMPREF1058_RS10970 0.59 +3.0 514,401 - HMPREF1058_RS10970 0.59 +0.4 514,568 + HMPREF1058_RS10970 0.67 +1.3 514,568 + HMPREF1058_RS10970 0.67 +1.0 514,568 + HMPREF1058_RS10970 0.67 -1.9 514,569 - HMPREF1058_RS10970 0.67 -1.2 514,569 - HMPREF1058_RS10970 0.67 -1.5 514,569 - HMPREF1058_RS10970 0.67 -0.9 514,572 + HMPREF1058_RS10970 0.67 +2.0 514,572 + HMPREF1058_RS10970 0.67 -1.5 514,573 - HMPREF1058_RS10970 0.67 -0.0 514,732 + HMPREF1058_RS10970 0.75 +2.0 514,751 - HMPREF1058_RS10970 0.76 +1.6 514,826 - HMPREF1058_RS10970 0.79 +0.5 514,826 - HMPREF1058_RS10970 0.79 -0.7 514,905 - HMPREF1058_RS10970 0.83 +0.6 514,955 - HMPREF1058_RS10970 0.85 +0.9 515,003 - HMPREF1058_RS10970 0.87 +0.8 515,122 + -0.4 515,123 - -0.0 515,134 + -1.2 515,134 + -0.0 515,135 - +0.2 515,138 - +0.1 515,283 - +0.5 515,283 - -0.8 515,283 - -0.2 515,283 - +0.3 515,287 - -0.9 515,293 + +1.2 515,293 + +0.6 515,294 - -0.7 515,337 - +1.0 515,340 + -0.2 515,341 - -1.6 515,390 + -3.4 515,450 + -1.7 515,450 + -1.4 515,597 + HMPREF1058_RS10965 0.25 -2.1 515,597 + HMPREF1058_RS10965 0.25 -1.6 515,597 + HMPREF1058_RS10965 0.25 -0.3 515,675 + HMPREF1058_RS10965 0.33 -2.3 516,088 + HMPREF1058_RS10965 0.77 -2.2 516,088 + HMPREF1058_RS10965 0.77 -1.2 516,167 + HMPREF1058_RS10965 0.85 -1.9 516,167 + HMPREF1058_RS10965 0.85 -0.6 516,169 + HMPREF1058_RS10965 0.85 -1.4 516,169 + HMPREF1058_RS10965 0.85 -2.6 516,179 + HMPREF1058_RS10965 0.87 -0.9 516,181 + HMPREF1058_RS10965 0.87 -1.7 516,209 + HMPREF1058_RS10965 0.90 -2.3 516,242 + -1.3 516,242 + -1.3
Or see this region's nucleotide sequence