Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09690

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS09695 and HMPREF1058_RS09690 are separated by 4 nucleotidesHMPREF1058_RS09690 and HMPREF1058_RS09685 are separated by 153 nucleotides HMPREF1058_RS09695: HMPREF1058_RS09695 - YifB family Mg chelatase-like AAA ATPase, at 818,381 to 819,919 _RS09695 HMPREF1058_RS09690: HMPREF1058_RS09690 - DUF4369 domain-containing protein, at 819,924 to 820,991 _RS09690 HMPREF1058_RS09685: HMPREF1058_RS09685 - tetratricopeptide repeat protein, at 821,145 to 822,821 _RS09685 Position (kb) 819 820 821Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 818.938 kb on + strand, within HMPREF1058_RS09695at 818.938 kb on + strandat 818.938 kb on + strand, within HMPREF1058_RS09695at 818.939 kb on - strand, within HMPREF1058_RS09695at 818.939 kb on - strand, within HMPREF1058_RS09695at 818.939 kb on - strand, within HMPREF1058_RS09695at 818.939 kb on - strand, within HMPREF1058_RS09695at 818.966 kb on + strand, within HMPREF1058_RS09695at 819.077 kb on + strand, within HMPREF1058_RS09695at 819.077 kb on + strand, within HMPREF1058_RS09695at 819.078 kb on - strand, within HMPREF1058_RS09695at 819.091 kb on + strand, within HMPREF1058_RS09695at 819.265 kb on + strand, within HMPREF1058_RS09695at 819.265 kb on + strand, within HMPREF1058_RS09695at 819.356 kb on - strand, within HMPREF1058_RS09695at 819.462 kb on - strand, within HMPREF1058_RS09695at 819.479 kb on + strand, within HMPREF1058_RS09695at 819.547 kb on + strand, within HMPREF1058_RS09695at 819.615 kb on + strand, within HMPREF1058_RS09695at 819.684 kb on + strand, within HMPREF1058_RS09695at 819.705 kb on - strand, within HMPREF1058_RS09695at 819.837 kb on - strandat 819.854 kb on + strandat 819.855 kb on - strandat 819.855 kb on - strandat 819.866 kb on + strandat 819.867 kb on - strandat 820.267 kb on - strand, within HMPREF1058_RS09690at 820.446 kb on + strand, within HMPREF1058_RS09690at 820.447 kb on - strand, within HMPREF1058_RS09690at 820.447 kb on - strand, within HMPREF1058_RS09690at 820.449 kb on - strand, within HMPREF1058_RS09690at 820.451 kb on + strand, within HMPREF1058_RS09690at 820.452 kb on - strandat 820.453 kb on + strand, within HMPREF1058_RS09690at 820.453 kb on + strand, within HMPREF1058_RS09690at 820.453 kb on + strand, within HMPREF1058_RS09690at 820.454 kb on - strand, within HMPREF1058_RS09690at 820.468 kb on - strand, within HMPREF1058_RS09690at 820.500 kb on + strand, within HMPREF1058_RS09690at 820.501 kb on - strand, within HMPREF1058_RS09690at 820.501 kb on - strand, within HMPREF1058_RS09690at 820.510 kb on + strand, within HMPREF1058_RS09690at 820.530 kb on + strand, within HMPREF1058_RS09690at 820.557 kb on - strand, within HMPREF1058_RS09690at 820.557 kb on - strand, within HMPREF1058_RS09690at 820.623 kb on - strand, within HMPREF1058_RS09690at 820.643 kb on - strand, within HMPREF1058_RS09690at 820.649 kb on + strand, within HMPREF1058_RS09690at 820.649 kb on + strand, within HMPREF1058_RS09690at 820.650 kb on - strand, within HMPREF1058_RS09690at 820.650 kb on - strand, within HMPREF1058_RS09690at 820.741 kb on + strand, within HMPREF1058_RS09690at 820.741 kb on + strand, within HMPREF1058_RS09690at 820.742 kb on - strand, within HMPREF1058_RS09690at 820.742 kb on - strand, within HMPREF1058_RS09690at 820.743 kb on + strand, within HMPREF1058_RS09690at 820.774 kb on - strand, within HMPREF1058_RS09690at 820.785 kb on - strand, within HMPREF1058_RS09690at 820.810 kb on + strand, within HMPREF1058_RS09690at 820.816 kb on - strand, within HMPREF1058_RS09690at 820.837 kb on - strand, within HMPREF1058_RS09690at 820.837 kb on - strand, within HMPREF1058_RS09690at 820.878 kb on + strand, within HMPREF1058_RS09690at 820.879 kb on - strand, within HMPREF1058_RS09690at 820.880 kb on + strand, within HMPREF1058_RS09690at 820.880 kb on + strand, within HMPREF1058_RS09690at 820.881 kb on - strand, within HMPREF1058_RS09690at 820.881 kb on - strand, within HMPREF1058_RS09690at 820.881 kb on - strand, within HMPREF1058_RS09690at 820.881 kb on - strand, within HMPREF1058_RS09690at 820.902 kb on - strandat 821.039 kb on + strandat 821.041 kb on + strandat 821.041 kb on + strandat 821.042 kb on - strandat 821.138 kb on - strandat 821.138 kb on - strandat 821.138 kb on - strandat 821.141 kb on + strandat 821.141 kb on + strandat 821.142 kb on - strandat 821.144 kb on - strandat 821.164 kb on + strandat 821.330 kb on + strand, within HMPREF1058_RS09685at 821.330 kb on + strand, within HMPREF1058_RS09685at 821.331 kb on - strand, within HMPREF1058_RS09685at 821.385 kb on - strand, within HMPREF1058_RS09685at 821.440 kb on + strand, within HMPREF1058_RS09685at 821.440 kb on + strand, within HMPREF1058_RS09685at 821.440 kb on + strand, within HMPREF1058_RS09685at 821.442 kb on + strand, within HMPREF1058_RS09685at 821.442 kb on + strand, within HMPREF1058_RS09685at 821.442 kb on + strand, within HMPREF1058_RS09685at 821.443 kb on - strand, within HMPREF1058_RS09685at 821.443 kb on - strand, within HMPREF1058_RS09685at 821.443 kb on - strand, within HMPREF1058_RS09685at 821.443 kb on - strand, within HMPREF1058_RS09685at 821.443 kb on - strandat 821.443 kb on - strand, within HMPREF1058_RS09685at 821.553 kb on + strand, within HMPREF1058_RS09685at 821.577 kb on - strand, within HMPREF1058_RS09685at 821.649 kb on - strand, within HMPREF1058_RS09685at 821.651 kb on + strand, within HMPREF1058_RS09685at 821.652 kb on - strand, within HMPREF1058_RS09685at 821.652 kb on - strand, within HMPREF1058_RS09685at 821.654 kb on - strand, within HMPREF1058_RS09685at 821.741 kb on - strand, within HMPREF1058_RS09685at 821.741 kb on - strand, within HMPREF1058_RS09685at 821.764 kb on - strand, within HMPREF1058_RS09685at 821.824 kb on + strand, within HMPREF1058_RS09685at 821.824 kb on + strand, within HMPREF1058_RS09685at 821.835 kb on + strand, within HMPREF1058_RS09685at 821.897 kb on + strand, within HMPREF1058_RS09685at 821.940 kb on - strand, within HMPREF1058_RS09685at 821.952 kb on + strand, within HMPREF1058_RS09685at 821.952 kb on + strand, within HMPREF1058_RS09685at 821.985 kb on - strand, within HMPREF1058_RS09685

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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818,938 + HMPREF1058_RS09695 0.36 -0.2
818,938 + +4.2
818,938 + HMPREF1058_RS09695 0.36 -0.9
818,939 - HMPREF1058_RS09695 0.36 -1.9
818,939 - HMPREF1058_RS09695 0.36 -0.9
818,939 - HMPREF1058_RS09695 0.36 +0.2
818,939 - HMPREF1058_RS09695 0.36 -1.4
818,966 + HMPREF1058_RS09695 0.38 -0.3
819,077 + HMPREF1058_RS09695 0.45 -0.4
819,077 + HMPREF1058_RS09695 0.45 -1.1
819,078 - HMPREF1058_RS09695 0.45 -0.1
819,091 + HMPREF1058_RS09695 0.46 -0.5
819,265 + HMPREF1058_RS09695 0.57 -0.4
819,265 + HMPREF1058_RS09695 0.57 +0.7
819,356 - HMPREF1058_RS09695 0.63 -0.3
819,462 - HMPREF1058_RS09695 0.70 -0.4
819,479 + HMPREF1058_RS09695 0.71 +0.2
819,547 + HMPREF1058_RS09695 0.76 -0.4
819,615 + HMPREF1058_RS09695 0.80 +0.0
819,684 + HMPREF1058_RS09695 0.85 -1.7
819,705 - HMPREF1058_RS09695 0.86 -0.4
819,837 - -1.1
819,854 + -0.9
819,855 - -0.6
819,855 - -1.0
819,866 + +1.2
819,867 - -2.1
820,267 - HMPREF1058_RS09690 0.32 -1.4
820,446 + HMPREF1058_RS09690 0.49 -1.9
820,447 - HMPREF1058_RS09690 0.49 -0.9
820,447 - HMPREF1058_RS09690 0.49 -2.2
820,449 - HMPREF1058_RS09690 0.49 +2.0
820,451 + HMPREF1058_RS09690 0.49 -2.5
820,452 - -0.6
820,453 + HMPREF1058_RS09690 0.50 -1.8
820,453 + HMPREF1058_RS09690 0.50 -2.7
820,453 + HMPREF1058_RS09690 0.50 -1.8
820,454 - HMPREF1058_RS09690 0.50 -0.3
820,468 - HMPREF1058_RS09690 0.51 -1.3
820,500 + HMPREF1058_RS09690 0.54 +0.3
820,501 - HMPREF1058_RS09690 0.54 -1.3
820,501 - HMPREF1058_RS09690 0.54 -1.5
820,510 + HMPREF1058_RS09690 0.55 -3.4
820,530 + HMPREF1058_RS09690 0.57 -2.7
820,557 - HMPREF1058_RS09690 0.59 -2.5
820,557 - HMPREF1058_RS09690 0.59 -3.1
820,623 - HMPREF1058_RS09690 0.65 -2.8
820,643 - HMPREF1058_RS09690 0.67 -2.1
820,649 + HMPREF1058_RS09690 0.68 -2.1
820,649 + HMPREF1058_RS09690 0.68 -2.1
820,650 - HMPREF1058_RS09690 0.68 -3.3
820,650 - HMPREF1058_RS09690 0.68 -0.9
820,741 + HMPREF1058_RS09690 0.76 -3.0
820,741 + HMPREF1058_RS09690 0.76 +0.4
820,742 - HMPREF1058_RS09690 0.77 -2.5
820,742 - HMPREF1058_RS09690 0.77 -1.8
820,743 + HMPREF1058_RS09690 0.77 -3.4
820,774 - HMPREF1058_RS09690 0.80 -1.4
820,785 - HMPREF1058_RS09690 0.81 -1.2
820,810 + HMPREF1058_RS09690 0.83 -1.4
820,816 - HMPREF1058_RS09690 0.84 -4.0
820,837 - HMPREF1058_RS09690 0.85 -2.5
820,837 - HMPREF1058_RS09690 0.85 -3.0
820,878 + HMPREF1058_RS09690 0.89 -2.5
820,879 - HMPREF1058_RS09690 0.89 -3.0
820,880 + HMPREF1058_RS09690 0.90 -1.7
820,880 + HMPREF1058_RS09690 0.90 -1.6
820,881 - HMPREF1058_RS09690 0.90 -1.7
820,881 - HMPREF1058_RS09690 0.90 -2.4
820,881 - HMPREF1058_RS09690 0.90 -1.9
820,881 - HMPREF1058_RS09690 0.90 -0.4
820,902 - -2.2
821,039 + -1.7
821,041 + -1.0
821,041 + -1.2
821,042 - -0.2
821,138 - +0.5
821,138 - -0.3
821,138 - -0.0
821,141 + -0.7
821,141 + -2.6
821,142 - -0.6
821,144 - -1.2
821,164 + -1.7
821,330 + HMPREF1058_RS09685 0.11 -3.5
821,330 + HMPREF1058_RS09685 0.11 -1.0
821,331 - HMPREF1058_RS09685 0.11 -3.0
821,385 - HMPREF1058_RS09685 0.14 -1.0
821,440 + HMPREF1058_RS09685 0.18 -1.7
821,440 + HMPREF1058_RS09685 0.18 -2.3
821,440 + HMPREF1058_RS09685 0.18 -3.0
821,442 + HMPREF1058_RS09685 0.18 -1.8
821,442 + HMPREF1058_RS09685 0.18 -1.7
821,442 + HMPREF1058_RS09685 0.18 -2.6
821,443 - HMPREF1058_RS09685 0.18 -1.1
821,443 - HMPREF1058_RS09685 0.18 -2.3
821,443 - HMPREF1058_RS09685 0.18 -2.0
821,443 - HMPREF1058_RS09685 0.18 -3.5
821,443 - +0.0
821,443 - HMPREF1058_RS09685 0.18 -1.1
821,553 + HMPREF1058_RS09685 0.24 -2.9
821,577 - HMPREF1058_RS09685 0.26 -2.9
821,649 - HMPREF1058_RS09685 0.30 -1.8
821,651 + HMPREF1058_RS09685 0.30 -1.4
821,652 - HMPREF1058_RS09685 0.30 -2.5
821,652 - HMPREF1058_RS09685 0.30 -0.6
821,654 - HMPREF1058_RS09685 0.30 -1.6
821,741 - HMPREF1058_RS09685 0.36 -2.2
821,741 - HMPREF1058_RS09685 0.36 +1.4
821,764 - HMPREF1058_RS09685 0.37 -2.9
821,824 + HMPREF1058_RS09685 0.40 -4.4
821,824 + HMPREF1058_RS09685 0.40 -0.6
821,835 + HMPREF1058_RS09685 0.41 -0.8
821,897 + HMPREF1058_RS09685 0.45 -2.0
821,940 - HMPREF1058_RS09685 0.47 -0.3
821,952 + HMPREF1058_RS09685 0.48 -1.9
821,952 + HMPREF1058_RS09685 0.48 -2.1
821,985 - HMPREF1058_RS09685 0.50 -2.9

Or see this region's nucleotide sequence