Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09490 and HMPREF1058_RS09485 are separated by 43 nucleotides HMPREF1058_RS09485 and HMPREF1058_RS09480 are separated by 65 nucleotides
HMPREF1058_RS09490: HMPREF1058_RS09490 - adenosine kinase, at 870,237 to 871,223
_RS09490
HMPREF1058_RS09485: HMPREF1058_RS09485 - PDZ domain-containing protein, at 871,267 to 872,961
_RS09485
HMPREF1058_RS09480: HMPREF1058_RS09480 - outer membrane beta-barrel protein, at 873,027 to 875,324
_RS09480
Position (kb) 871
872
873 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 870.346 kb on + strand, within HMPREF1058_RS09490 at 870.347 kb on - strand, within HMPREF1058_RS09490 at 870.446 kb on + strand, within HMPREF1058_RS09490 at 870.582 kb on - strand, within HMPREF1058_RS09490 at 870.608 kb on + strand, within HMPREF1058_RS09490 at 870.609 kb on - strand, within HMPREF1058_RS09490 at 870.622 kb on - strand, within HMPREF1058_RS09490 at 870.622 kb on - strand, within HMPREF1058_RS09490 at 870.641 kb on + strand, within HMPREF1058_RS09490 at 870.682 kb on - strand, within HMPREF1058_RS09490 at 870.687 kb on + strand, within HMPREF1058_RS09490 at 870.691 kb on + strand, within HMPREF1058_RS09490 at 870.692 kb on - strand, within HMPREF1058_RS09490 at 870.692 kb on - strand, within HMPREF1058_RS09490 at 870.693 kb on + strand, within HMPREF1058_RS09490 at 870.693 kb on + strand, within HMPREF1058_RS09490 at 870.696 kb on - strand, within HMPREF1058_RS09490 at 870.697 kb on + strand, within HMPREF1058_RS09490 at 870.792 kb on + strand, within HMPREF1058_RS09490 at 870.795 kb on - strand, within HMPREF1058_RS09490 at 870.795 kb on - strand, within HMPREF1058_RS09490 at 870.798 kb on - strand, within HMPREF1058_RS09490 at 870.798 kb on - strand, within HMPREF1058_RS09490 at 870.835 kb on + strand, within HMPREF1058_RS09490 at 870.839 kb on + strand, within HMPREF1058_RS09490 at 870.885 kb on + strand, within HMPREF1058_RS09490 at 870.886 kb on - strand, within HMPREF1058_RS09490 at 870.887 kb on + strand, within HMPREF1058_RS09490 at 870.944 kb on - strand, within HMPREF1058_RS09490 at 870.956 kb on - strand, within HMPREF1058_RS09490 at 870.974 kb on + strand, within HMPREF1058_RS09490 at 871.053 kb on + strand, within HMPREF1058_RS09490 at 871.053 kb on + strand, within HMPREF1058_RS09490 at 871.056 kb on + strand, within HMPREF1058_RS09490 at 871.057 kb on - strand, within HMPREF1058_RS09490 at 871.118 kb on - strand, within HMPREF1058_RS09490 at 871.130 kb on - strand at 871.196 kb on - strand at 871.225 kb on + strand at 871.230 kb on + strand at 871.238 kb on + strand at 871.239 kb on - strand at 871.256 kb on + strand at 871.279 kb on - strand at 871.281 kb on + strand at 871.290 kb on - strand at 871.290 kb on - strand at 871.341 kb on + strand at 871.414 kb on - strand at 871.431 kb on + strand at 871.457 kb on - strand, within HMPREF1058_RS09485 at 871.457 kb on - strand, within HMPREF1058_RS09485 at 871.461 kb on + strand, within HMPREF1058_RS09485 at 871.505 kb on - strand, within HMPREF1058_RS09485 at 871.518 kb on + strand, within HMPREF1058_RS09485 at 871.519 kb on - strand, within HMPREF1058_RS09485 at 871.521 kb on + strand, within HMPREF1058_RS09485 at 871.522 kb on - strand, within HMPREF1058_RS09485 at 871.522 kb on - strand, within HMPREF1058_RS09485 at 871.577 kb on - strand, within HMPREF1058_RS09485 at 871.579 kb on + strand, within HMPREF1058_RS09485 at 871.579 kb on + strand, within HMPREF1058_RS09485 at 871.579 kb on + strand, within HMPREF1058_RS09485 at 871.580 kb on - strand, within HMPREF1058_RS09485 at 871.580 kb on - strand, within HMPREF1058_RS09485 at 871.582 kb on - strand, within HMPREF1058_RS09485 at 871.606 kb on - strand, within HMPREF1058_RS09485 at 871.640 kb on + strand, within HMPREF1058_RS09485 at 871.726 kb on + strand, within HMPREF1058_RS09485 at 871.726 kb on + strand, within HMPREF1058_RS09485 at 871.726 kb on + strand, within HMPREF1058_RS09485 at 871.789 kb on - strand, within HMPREF1058_RS09485 at 871.800 kb on + strand, within HMPREF1058_RS09485 at 871.805 kb on - strand, within HMPREF1058_RS09485 at 871.805 kb on - strand, within HMPREF1058_RS09485 at 871.836 kb on + strand, within HMPREF1058_RS09485 at 871.837 kb on - strand, within HMPREF1058_RS09485 at 871.857 kb on - strand, within HMPREF1058_RS09485 at 871.892 kb on - strand, within HMPREF1058_RS09485 at 871.894 kb on - strand, within HMPREF1058_RS09485 at 871.937 kb on + strand, within HMPREF1058_RS09485 at 871.952 kb on + strand, within HMPREF1058_RS09485 at 871.952 kb on + strand, within HMPREF1058_RS09485 at 871.981 kb on - strand, within HMPREF1058_RS09485 at 872.110 kb on + strand, within HMPREF1058_RS09485 at 872.110 kb on + strand, within HMPREF1058_RS09485 at 872.160 kb on - strand, within HMPREF1058_RS09485 at 872.226 kb on + strand, within HMPREF1058_RS09485 at 872.244 kb on + strand, within HMPREF1058_RS09485 at 872.245 kb on - strand, within HMPREF1058_RS09485 at 872.245 kb on - strand, within HMPREF1058_RS09485 at 872.253 kb on + strand, within HMPREF1058_RS09485 at 872.264 kb on + strand, within HMPREF1058_RS09485 at 872.320 kb on + strand, within HMPREF1058_RS09485 at 872.320 kb on + strand, within HMPREF1058_RS09485 at 872.321 kb on - strand, within HMPREF1058_RS09485 at 872.325 kb on + strand, within HMPREF1058_RS09485 at 872.326 kb on - strand, within HMPREF1058_RS09485 at 872.370 kb on + strand, within HMPREF1058_RS09485 at 872.417 kb on + strand, within HMPREF1058_RS09485 at 872.530 kb on - strand, within HMPREF1058_RS09485 at 872.530 kb on - strand, within HMPREF1058_RS09485 at 872.543 kb on - strand, within HMPREF1058_RS09485 at 872.560 kb on - strand, within HMPREF1058_RS09485 at 872.560 kb on - strand, within HMPREF1058_RS09485 at 872.615 kb on - strand, within HMPREF1058_RS09485 at 872.615 kb on - strand, within HMPREF1058_RS09485 at 872.641 kb on - strand, within HMPREF1058_RS09485 at 872.646 kb on + strand, within HMPREF1058_RS09485 at 872.647 kb on - strand, within HMPREF1058_RS09485 at 872.653 kb on - strand, within HMPREF1058_RS09485 at 872.657 kb on - strand, within HMPREF1058_RS09485 at 872.716 kb on + strand, within HMPREF1058_RS09485 at 872.716 kb on + strand, within HMPREF1058_RS09485 at 872.718 kb on + strand, within HMPREF1058_RS09485 at 872.718 kb on + strand, within HMPREF1058_RS09485 at 872.718 kb on + strand, within HMPREF1058_RS09485 at 872.718 kb on + strand, within HMPREF1058_RS09485 at 872.719 kb on - strand, within HMPREF1058_RS09485 at 872.719 kb on - strand, within HMPREF1058_RS09485 at 872.719 kb on - strand, within HMPREF1058_RS09485 at 872.843 kb on - strand at 872.846 kb on - strand at 872.932 kb on + strand at 872.937 kb on + strand at 872.937 kb on + strand at 872.943 kb on - strand at 872.981 kb on - strand at 872.999 kb on - strand at 873.003 kb on + strand at 873.003 kb on + strand at 873.012 kb on - strand at 873.044 kb on + strand at 873.057 kb on - strand at 873.071 kb on + strand at 873.142 kb on + strand at 873.142 kb on + strand at 873.143 kb on - strand at 873.143 kb on - strand at 873.152 kb on + strand at 873.155 kb on + strand at 873.171 kb on + strand at 873.171 kb on + strand at 873.172 kb on - strand at 873.299 kb on + strand, within HMPREF1058_RS09480 at 873.299 kb on + strand, within HMPREF1058_RS09480 at 873.300 kb on - strand, within HMPREF1058_RS09480 at 873.300 kb on - strand, within HMPREF1058_RS09480 at 873.358 kb on - strand, within HMPREF1058_RS09480 at 873.366 kb on - strand, within HMPREF1058_RS09480 at 873.616 kb on + strand, within HMPREF1058_RS09480 at 873.633 kb on - strand, within HMPREF1058_RS09480 at 873.652 kb on + strand, within HMPREF1058_RS09480 at 873.705 kb on + strand, within HMPREF1058_RS09480 at 873.706 kb on - strand, within HMPREF1058_RS09480 at 873.723 kb on + strand, within HMPREF1058_RS09480 at 873.723 kb on + strand, within HMPREF1058_RS09480 at 873.723 kb on + strand, within HMPREF1058_RS09480 at 873.726 kb on - strand, within HMPREF1058_RS09480 at 873.727 kb on - strand, within HMPREF1058_RS09480 at 873.763 kb on + strand, within HMPREF1058_RS09480 at 873.771 kb on - strand, within HMPREF1058_RS09480 at 873.797 kb on + strand, within HMPREF1058_RS09480 at 873.797 kb on + strand, within HMPREF1058_RS09480 at 873.814 kb on - strand, within HMPREF1058_RS09480 at 873.817 kb on + strand, within HMPREF1058_RS09480 at 873.817 kb on + strand, within HMPREF1058_RS09480 at 873.817 kb on + strand, within HMPREF1058_RS09480 at 873.817 kb on + strand, within HMPREF1058_RS09480 at 873.817 kb on + strand, within HMPREF1058_RS09480 at 873.817 kb on + strand, within HMPREF1058_RS09480 at 873.833 kb on + strand, within HMPREF1058_RS09480 at 873.946 kb on + strand, within HMPREF1058_RS09480 at 873.946 kb on + strand, within HMPREF1058_RS09480 at 873.947 kb on - strand, within HMPREF1058_RS09480 at 873.950 kb on + strand, within HMPREF1058_RS09480 at 873.950 kb on + strand, within HMPREF1058_RS09480 at 873.950 kb on + strand, within HMPREF1058_RS09480 at 873.950 kb on + strand, within HMPREF1058_RS09480 at 873.950 kb on + strand, within HMPREF1058_RS09480 at 873.951 kb on - strand, within HMPREF1058_RS09480 at 873.951 kb on - strand, within HMPREF1058_RS09480 at 873.951 kb on - strand, within HMPREF1058_RS09480 at 873.951 kb on - strand, within HMPREF1058_RS09480 at 873.951 kb on - strand, within HMPREF1058_RS09480 at 873.953 kb on - strand, within HMPREF1058_RS09480
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 870,346 + HMPREF1058_RS09490 0.11 +0.8 870,347 - HMPREF1058_RS09490 0.11 +0.4 870,446 + HMPREF1058_RS09490 0.21 +1.8 870,582 - HMPREF1058_RS09490 0.35 +1.1 870,608 + HMPREF1058_RS09490 0.38 -0.4 870,609 - HMPREF1058_RS09490 0.38 +0.1 870,622 - HMPREF1058_RS09490 0.39 -0.4 870,622 - HMPREF1058_RS09490 0.39 -0.5 870,641 + HMPREF1058_RS09490 0.41 +1.1 870,682 - HMPREF1058_RS09490 0.45 +0.2 870,687 + HMPREF1058_RS09490 0.46 +1.0 870,691 + HMPREF1058_RS09490 0.46 -0.4 870,692 - HMPREF1058_RS09490 0.46 +0.2 870,692 - HMPREF1058_RS09490 0.46 +2.0 870,693 + HMPREF1058_RS09490 0.46 +0.3 870,693 + HMPREF1058_RS09490 0.46 -0.3 870,696 - HMPREF1058_RS09490 0.47 -1.8 870,697 + HMPREF1058_RS09490 0.47 +2.0 870,792 + HMPREF1058_RS09490 0.56 +0.0 870,795 - HMPREF1058_RS09490 0.57 -0.4 870,795 - HMPREF1058_RS09490 0.57 -1.0 870,798 - HMPREF1058_RS09490 0.57 +1.0 870,798 - HMPREF1058_RS09490 0.57 -1.0 870,835 + HMPREF1058_RS09490 0.61 +2.6 870,839 + HMPREF1058_RS09490 0.61 -1.0 870,885 + HMPREF1058_RS09490 0.66 -0.6 870,886 - HMPREF1058_RS09490 0.66 -0.5 870,887 + HMPREF1058_RS09490 0.66 +0.5 870,944 - HMPREF1058_RS09490 0.72 -0.1 870,956 - HMPREF1058_RS09490 0.73 -0.6 870,974 + HMPREF1058_RS09490 0.75 +0.3 871,053 + HMPREF1058_RS09490 0.83 +1.7 871,053 + HMPREF1058_RS09490 0.83 -0.9 871,056 + HMPREF1058_RS09490 0.83 -0.4 871,057 - HMPREF1058_RS09490 0.83 +0.3 871,118 - HMPREF1058_RS09490 0.89 +0.7 871,130 - +0.3 871,196 - -1.0 871,225 + +0.7 871,230 + +0.6 871,238 + +0.5 871,239 - -0.6 871,256 + +1.4 871,279 - -0.7 871,281 + -1.2 871,290 - +0.4 871,290 - -1.1 871,341 + -3.2 871,414 - -0.4 871,431 + -3.5 871,457 - HMPREF1058_RS09485 0.11 +0.0 871,457 - HMPREF1058_RS09485 0.11 +2.3 871,461 + HMPREF1058_RS09485 0.11 -3.5 871,505 - HMPREF1058_RS09485 0.14 -1.9 871,518 + HMPREF1058_RS09485 0.15 -2.9 871,519 - HMPREF1058_RS09485 0.15 -2.0 871,521 + HMPREF1058_RS09485 0.15 -1.4 871,522 - HMPREF1058_RS09485 0.15 -2.3 871,522 - HMPREF1058_RS09485 0.15 -1.0 871,577 - HMPREF1058_RS09485 0.18 -1.4 871,579 + HMPREF1058_RS09485 0.18 -2.8 871,579 + HMPREF1058_RS09485 0.18 -0.7 871,579 + HMPREF1058_RS09485 0.18 -2.0 871,580 - HMPREF1058_RS09485 0.18 +1.0 871,580 - HMPREF1058_RS09485 0.18 -1.0 871,582 - HMPREF1058_RS09485 0.19 +2.0 871,606 - HMPREF1058_RS09485 0.20 +1.0 871,640 + HMPREF1058_RS09485 0.22 -0.2 871,726 + HMPREF1058_RS09485 0.27 -1.4 871,726 + HMPREF1058_RS09485 0.27 -0.5 871,726 + HMPREF1058_RS09485 0.27 -2.0 871,789 - HMPREF1058_RS09485 0.31 -1.1 871,800 + HMPREF1058_RS09485 0.31 -2.1 871,805 - HMPREF1058_RS09485 0.32 -2.2 871,805 - HMPREF1058_RS09485 0.32 -1.5 871,836 + HMPREF1058_RS09485 0.34 -3.5 871,837 - HMPREF1058_RS09485 0.34 -1.5 871,857 - HMPREF1058_RS09485 0.35 -4.1 871,892 - HMPREF1058_RS09485 0.37 -1.8 871,894 - HMPREF1058_RS09485 0.37 -0.8 871,937 + HMPREF1058_RS09485 0.40 -3.2 871,952 + HMPREF1058_RS09485 0.40 -2.3 871,952 + HMPREF1058_RS09485 0.40 -0.8 871,981 - HMPREF1058_RS09485 0.42 -1.2 872,110 + HMPREF1058_RS09485 0.50 -2.3 872,110 + HMPREF1058_RS09485 0.50 -2.0 872,160 - HMPREF1058_RS09485 0.53 -1.1 872,226 + HMPREF1058_RS09485 0.57 -1.1 872,244 + HMPREF1058_RS09485 0.58 -2.1 872,245 - HMPREF1058_RS09485 0.58 -1.7 872,245 - HMPREF1058_RS09485 0.58 +0.4 872,253 + HMPREF1058_RS09485 0.58 -1.0 872,264 + HMPREF1058_RS09485 0.59 +0.8 872,320 + HMPREF1058_RS09485 0.62 -2.2 872,320 + HMPREF1058_RS09485 0.62 -0.8 872,321 - HMPREF1058_RS09485 0.62 -3.7 872,325 + HMPREF1058_RS09485 0.62 -2.9 872,326 - HMPREF1058_RS09485 0.62 -2.0 872,370 + HMPREF1058_RS09485 0.65 -3.2 872,417 + HMPREF1058_RS09485 0.68 -1.3 872,530 - HMPREF1058_RS09485 0.75 -3.9 872,530 - HMPREF1058_RS09485 0.75 -1.2 872,543 - HMPREF1058_RS09485 0.75 -0.9 872,560 - HMPREF1058_RS09485 0.76 -2.9 872,560 - HMPREF1058_RS09485 0.76 +1.4 872,615 - HMPREF1058_RS09485 0.80 -1.8 872,615 - HMPREF1058_RS09485 0.80 -0.8 872,641 - HMPREF1058_RS09485 0.81 -3.0 872,646 + HMPREF1058_RS09485 0.81 -1.7 872,647 - HMPREF1058_RS09485 0.81 -3.4 872,653 - HMPREF1058_RS09485 0.82 -2.3 872,657 - HMPREF1058_RS09485 0.82 +1.3 872,716 + HMPREF1058_RS09485 0.85 -2.4 872,716 + HMPREF1058_RS09485 0.85 -1.0 872,718 + HMPREF1058_RS09485 0.86 -3.0 872,718 + HMPREF1058_RS09485 0.86 -1.7 872,718 + HMPREF1058_RS09485 0.86 -3.7 872,718 + HMPREF1058_RS09485 0.86 -3.9 872,719 - HMPREF1058_RS09485 0.86 -1.3 872,719 - HMPREF1058_RS09485 0.86 -2.1 872,719 - HMPREF1058_RS09485 0.86 -2.4 872,843 - +0.1 872,846 - -1.0 872,932 + +1.7 872,937 + -0.1 872,937 + -0.7 872,943 - -1.2 872,981 - -0.3 872,999 - +0.4 873,003 + -0.3 873,003 + -0.8 873,012 - +0.2 873,044 + -0.1 873,057 - -0.2 873,071 + +0.1 873,142 + -0.4 873,142 + +0.4 873,143 - +0.6 873,143 - +0.4 873,152 + -0.5 873,155 + +0.1 873,171 + +1.0 873,171 + -0.3 873,172 - -0.7 873,299 + HMPREF1058_RS09480 0.12 +0.4 873,299 + HMPREF1058_RS09480 0.12 -0.6 873,300 - HMPREF1058_RS09480 0.12 +1.6 873,300 - HMPREF1058_RS09480 0.12 +1.1 873,358 - HMPREF1058_RS09480 0.14 -0.0 873,366 - HMPREF1058_RS09480 0.15 -0.0 873,616 + HMPREF1058_RS09480 0.26 -1.7 873,633 - HMPREF1058_RS09480 0.26 -1.3 873,652 + HMPREF1058_RS09480 0.27 +0.7 873,705 + HMPREF1058_RS09480 0.30 -0.4 873,706 - HMPREF1058_RS09480 0.30 +1.7 873,723 + HMPREF1058_RS09480 0.30 -0.1 873,723 + HMPREF1058_RS09480 0.30 +0.6 873,723 + HMPREF1058_RS09480 0.30 +0.6 873,726 - HMPREF1058_RS09480 0.30 +0.1 873,727 - HMPREF1058_RS09480 0.30 +0.4 873,763 + HMPREF1058_RS09480 0.32 +0.1 873,771 - HMPREF1058_RS09480 0.32 +1.1 873,797 + HMPREF1058_RS09480 0.34 -0.9 873,797 + HMPREF1058_RS09480 0.34 +1.3 873,814 - HMPREF1058_RS09480 0.34 +1.3 873,817 + HMPREF1058_RS09480 0.34 -0.4 873,817 + HMPREF1058_RS09480 0.34 -0.9 873,817 + HMPREF1058_RS09480 0.34 -0.1 873,817 + HMPREF1058_RS09480 0.34 -2.4 873,817 + HMPREF1058_RS09480 0.34 +0.7 873,817 + HMPREF1058_RS09480 0.34 -0.3 873,833 + HMPREF1058_RS09480 0.35 -0.5 873,946 + HMPREF1058_RS09480 0.40 +0.1 873,946 + HMPREF1058_RS09480 0.40 -0.3 873,947 - HMPREF1058_RS09480 0.40 +0.3 873,950 + HMPREF1058_RS09480 0.40 -2.4 873,950 + HMPREF1058_RS09480 0.40 +0.1 873,950 + HMPREF1058_RS09480 0.40 -0.5 873,950 + HMPREF1058_RS09480 0.40 +0.3 873,950 + HMPREF1058_RS09480 0.40 +1.0 873,951 - HMPREF1058_RS09480 0.40 +0.1 873,951 - HMPREF1058_RS09480 0.40 +0.7 873,951 - HMPREF1058_RS09480 0.40 +0.5 873,951 - HMPREF1058_RS09480 0.40 +1.2 873,951 - HMPREF1058_RS09480 0.40 +0.4 873,953 - HMPREF1058_RS09480 0.40 +0.9
Or see this region's nucleotide sequence