Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07235 and HMPREF1058_RS07230 are separated by 14 nucleotides HMPREF1058_RS07230 and HMPREF1058_RS07225 are separated by 36 nucleotides
HMPREF1058_RS07235: HMPREF1058_RS07235 - A/G-specific adenine glycosylase, at 282,170 to 283,228
_RS07235
HMPREF1058_RS07230: HMPREF1058_RS07230 - single-stranded DNA-binding protein, at 283,243 to 283,710
_RS07230
HMPREF1058_RS07225: HMPREF1058_RS07225 - gliding motility-associated protein GldE, at 283,747 to 285,099
_RS07225
Position (kb) 283
284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 282.279 kb on + strand, within HMPREF1058_RS07235 at 282.280 kb on - strand, within HMPREF1058_RS07235 at 282.311 kb on + strand, within HMPREF1058_RS07235 at 282.314 kb on + strand, within HMPREF1058_RS07235 at 282.314 kb on + strand, within HMPREF1058_RS07235 at 282.315 kb on - strand, within HMPREF1058_RS07235 at 282.315 kb on - strand, within HMPREF1058_RS07235 at 282.476 kb on + strand, within HMPREF1058_RS07235 at 282.476 kb on + strand, within HMPREF1058_RS07235 at 282.477 kb on - strand, within HMPREF1058_RS07235 at 282.477 kb on - strand, within HMPREF1058_RS07235 at 282.515 kb on - strand, within HMPREF1058_RS07235 at 282.692 kb on + strand, within HMPREF1058_RS07235 at 282.693 kb on - strand, within HMPREF1058_RS07235 at 282.858 kb on - strand, within HMPREF1058_RS07235 at 282.862 kb on - strand, within HMPREF1058_RS07235 at 282.862 kb on - strand, within HMPREF1058_RS07235 at 282.863 kb on + strand, within HMPREF1058_RS07235 at 282.863 kb on + strand, within HMPREF1058_RS07235 at 282.863 kb on + strand, within HMPREF1058_RS07235 at 282.863 kb on + strand, within HMPREF1058_RS07235 at 282.864 kb on - strand, within HMPREF1058_RS07235 at 282.867 kb on + strand, within HMPREF1058_RS07235 at 282.867 kb on + strand, within HMPREF1058_RS07235 at 282.867 kb on + strand, within HMPREF1058_RS07235 at 282.890 kb on - strand, within HMPREF1058_RS07235 at 282.892 kb on - strand, within HMPREF1058_RS07235 at 282.896 kb on - strand, within HMPREF1058_RS07235 at 282.914 kb on - strand, within HMPREF1058_RS07235 at 282.914 kb on - strand, within HMPREF1058_RS07235 at 282.916 kb on - strand, within HMPREF1058_RS07235 at 282.945 kb on + strand, within HMPREF1058_RS07235 at 282.980 kb on + strand, within HMPREF1058_RS07235 at 283.575 kb on + strand, within HMPREF1058_RS07230 at 283.603 kb on + strand, within HMPREF1058_RS07230 at 283.784 kb on + strand at 283.796 kb on + strand at 283.829 kb on + strand at 283.829 kb on + strand at 283.833 kb on + strand at 283.833 kb on + strand at 283.850 kb on + strand at 283.858 kb on + strand at 283.959 kb on + strand, within HMPREF1058_RS07225 at 284.007 kb on + strand, within HMPREF1058_RS07225 at 284.016 kb on + strand, within HMPREF1058_RS07225 at 284.030 kb on + strand, within HMPREF1058_RS07225 at 284.391 kb on + strand, within HMPREF1058_RS07225 at 284.493 kb on + strand, within HMPREF1058_RS07225
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 282,279 + HMPREF1058_RS07235 0.10 -0.2 282,280 - HMPREF1058_RS07235 0.10 -0.3 282,311 + HMPREF1058_RS07235 0.13 +0.4 282,314 + HMPREF1058_RS07235 0.14 +0.3 282,314 + HMPREF1058_RS07235 0.14 -1.4 282,315 - HMPREF1058_RS07235 0.14 -0.2 282,315 - HMPREF1058_RS07235 0.14 +0.2 282,476 + HMPREF1058_RS07235 0.29 -0.5 282,476 + HMPREF1058_RS07235 0.29 +0.2 282,477 - HMPREF1058_RS07235 0.29 -0.1 282,477 - HMPREF1058_RS07235 0.29 +2.1 282,515 - HMPREF1058_RS07235 0.33 -0.3 282,692 + HMPREF1058_RS07235 0.49 +0.4 282,693 - HMPREF1058_RS07235 0.49 -2.3 282,858 - HMPREF1058_RS07235 0.65 -0.1 282,862 - HMPREF1058_RS07235 0.65 -0.4 282,862 - HMPREF1058_RS07235 0.65 +0.2 282,863 + HMPREF1058_RS07235 0.65 -0.3 282,863 + HMPREF1058_RS07235 0.65 +0.5 282,863 + HMPREF1058_RS07235 0.65 -0.3 282,863 + HMPREF1058_RS07235 0.65 -1.0 282,864 - HMPREF1058_RS07235 0.66 -0.1 282,867 + HMPREF1058_RS07235 0.66 -0.9 282,867 + HMPREF1058_RS07235 0.66 +0.5 282,867 + HMPREF1058_RS07235 0.66 -0.7 282,890 - HMPREF1058_RS07235 0.68 -0.2 282,892 - HMPREF1058_RS07235 0.68 -0.5 282,896 - HMPREF1058_RS07235 0.69 +0.3 282,914 - HMPREF1058_RS07235 0.70 -1.2 282,914 - HMPREF1058_RS07235 0.70 +0.2 282,916 - HMPREF1058_RS07235 0.70 -0.4 282,945 + HMPREF1058_RS07235 0.73 +0.5 282,980 + HMPREF1058_RS07235 0.76 -0.4 283,575 + HMPREF1058_RS07230 0.71 -1.8 283,603 + HMPREF1058_RS07230 0.77 -1.6 283,784 + +1.5 283,796 + -2.0 283,829 + -0.2 283,829 + -0.1 283,833 + -0.7 283,833 + +0.0 283,850 + +1.1 283,858 + -1.8 283,959 + HMPREF1058_RS07225 0.16 +0.5 284,007 + HMPREF1058_RS07225 0.19 +0.8 284,016 + HMPREF1058_RS07225 0.20 +0.2 284,030 + HMPREF1058_RS07225 0.21 -2.9 284,391 + HMPREF1058_RS07225 0.48 +1.0 284,493 + HMPREF1058_RS07225 0.55 +0.2
Or see this region's nucleotide sequence