Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06395 and HMPREF1058_RS06390 are separated by 166 nucleotides HMPREF1058_RS06390 and HMPREF1058_RS06385 are separated by 81 nucleotides
HMPREF1058_RS06395: HMPREF1058_RS06395 - amino acid permease, at 488,518 to 490,092
_RS06395
HMPREF1058_RS06390: HMPREF1058_RS06390 - two pore domain potassium channel family protein, at 490,259 to 490,993
_RS06390
HMPREF1058_RS06385: HMPREF1058_RS06385 - transglutaminase domain-containing protein, at 491,075 to 493,738
_RS06385
Position (kb) 490
491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 489.421 kb on + strand, within HMPREF1058_RS06395 at 489.558 kb on - strand, within HMPREF1058_RS06395 at 489.600 kb on + strand, within HMPREF1058_RS06395 at 489.605 kb on - strand, within HMPREF1058_RS06395 at 489.605 kb on - strand, within HMPREF1058_RS06395 at 489.605 kb on - strand, within HMPREF1058_RS06395 at 489.677 kb on + strand, within HMPREF1058_RS06395 at 489.678 kb on - strand, within HMPREF1058_RS06395 at 489.682 kb on - strand, within HMPREF1058_RS06395 at 489.854 kb on + strand, within HMPREF1058_RS06395 at 489.934 kb on - strand, within HMPREF1058_RS06395 at 490.045 kb on - strand at 490.077 kb on + strand at 490.077 kb on + strand at 490.116 kb on - strand at 490.245 kb on - strand at 490.320 kb on + strand at 490.320 kb on + strand at 490.353 kb on + strand, within HMPREF1058_RS06390 at 490.354 kb on - strand, within HMPREF1058_RS06390 at 490.357 kb on + strand, within HMPREF1058_RS06390 at 490.358 kb on - strand, within HMPREF1058_RS06390 at 490.370 kb on - strand, within HMPREF1058_RS06390 at 490.406 kb on + strand, within HMPREF1058_RS06390 at 490.526 kb on - strand, within HMPREF1058_RS06390 at 490.526 kb on - strand, within HMPREF1058_RS06390 at 490.683 kb on - strand, within HMPREF1058_RS06390 at 490.710 kb on - strand, within HMPREF1058_RS06390 at 490.823 kb on - strand, within HMPREF1058_RS06390 at 490.907 kb on + strand, within HMPREF1058_RS06390 at 490.952 kb on + strand at 491.064 kb on + strand at 491.131 kb on + strand at 491.292 kb on - strand at 491.293 kb on + strand at 491.513 kb on + strand, within HMPREF1058_RS06385 at 491.561 kb on + strand, within HMPREF1058_RS06385 at 491.562 kb on - strand, within HMPREF1058_RS06385 at 491.639 kb on - strand, within HMPREF1058_RS06385 at 491.639 kb on - strand, within HMPREF1058_RS06385 at 491.927 kb on + strand, within HMPREF1058_RS06385 at 491.928 kb on - strand, within HMPREF1058_RS06385 at 491.928 kb on - strand, within HMPREF1058_RS06385 at 491.928 kb on - strand, within HMPREF1058_RS06385
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 489,421 + HMPREF1058_RS06395 0.57 +0.4 489,558 - HMPREF1058_RS06395 0.66 -0.1 489,600 + HMPREF1058_RS06395 0.69 +1.1 489,605 - HMPREF1058_RS06395 0.69 -0.6 489,605 - HMPREF1058_RS06395 0.69 -0.3 489,605 - HMPREF1058_RS06395 0.69 -1.0 489,677 + HMPREF1058_RS06395 0.74 +0.2 489,678 - HMPREF1058_RS06395 0.74 -0.7 489,682 - HMPREF1058_RS06395 0.74 -2.0 489,854 + HMPREF1058_RS06395 0.85 +0.8 489,934 - HMPREF1058_RS06395 0.90 -0.7 490,045 - +0.7 490,077 + -0.1 490,077 + -0.1 490,116 - +0.2 490,245 - +0.9 490,320 + +0.8 490,320 + -0.1 490,353 + HMPREF1058_RS06390 0.13 +0.3 490,354 - HMPREF1058_RS06390 0.13 +1.1 490,357 + HMPREF1058_RS06390 0.13 +1.8 490,358 - HMPREF1058_RS06390 0.13 +0.9 490,370 - HMPREF1058_RS06390 0.15 +0.2 490,406 + HMPREF1058_RS06390 0.20 +0.1 490,526 - HMPREF1058_RS06390 0.36 +0.5 490,526 - HMPREF1058_RS06390 0.36 -0.4 490,683 - HMPREF1058_RS06390 0.58 +1.0 490,710 - HMPREF1058_RS06390 0.61 +0.9 490,823 - HMPREF1058_RS06390 0.77 +0.1 490,907 + HMPREF1058_RS06390 0.88 +0.8 490,952 + -0.6 491,064 + -0.3 491,131 + -1.3 491,292 - +0.5 491,293 + -1.2 491,513 + HMPREF1058_RS06385 0.16 +0.4 491,561 + HMPREF1058_RS06385 0.18 -0.1 491,562 - HMPREF1058_RS06385 0.18 +0.0 491,639 - HMPREF1058_RS06385 0.21 +1.6 491,639 - HMPREF1058_RS06385 0.21 +1.2 491,927 + HMPREF1058_RS06385 0.32 +0.6 491,928 - HMPREF1058_RS06385 0.32 -0.5 491,928 - HMPREF1058_RS06385 0.32 +0.7 491,928 - HMPREF1058_RS06385 0.32 +0.5
Or see this region's nucleotide sequence