Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05405 and HMPREF1058_RS05400 are separated by 13 nucleotides HMPREF1058_RS05400 and HMPREF1058_RS05395 are separated by 27 nucleotides
HMPREF1058_RS05405: HMPREF1058_RS05405 - 6-phosphofructokinase, at 171,226 to 172,212
_RS05405
HMPREF1058_RS05400: HMPREF1058_RS05400 - cation:proton antiporter, at 172,226 to 174,472
_RS05400
HMPREF1058_RS05395: HMPREF1058_RS05395 - alpha-glucan family phosphorylase, at 174,500 to 177,058
_RS05395
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 171.241 kb on + strand at 171.242 kb on - strand at 171.243 kb on + strand at 171.405 kb on - strand, within HMPREF1058_RS05405 at 171.430 kb on - strand, within HMPREF1058_RS05405 at 171.532 kb on - strand at 171.597 kb on - strand, within HMPREF1058_RS05405 at 171.647 kb on + strand, within HMPREF1058_RS05405 at 171.648 kb on - strand, within HMPREF1058_RS05405 at 171.652 kb on + strand, within HMPREF1058_RS05405 at 171.932 kb on + strand, within HMPREF1058_RS05405 at 171.934 kb on + strand, within HMPREF1058_RS05405 at 171.935 kb on - strand, within HMPREF1058_RS05405 at 171.935 kb on - strand, within HMPREF1058_RS05405 at 171.935 kb on - strand, within HMPREF1058_RS05405 at 171.935 kb on - strand, within HMPREF1058_RS05405 at 172.036 kb on - strand, within HMPREF1058_RS05405 at 172.036 kb on - strand, within HMPREF1058_RS05405 at 172.109 kb on + strand, within HMPREF1058_RS05405 at 172.288 kb on - strand at 172.324 kb on - strand at 172.408 kb on - strand at 172.518 kb on + strand, within HMPREF1058_RS05400 at 172.519 kb on - strand, within HMPREF1058_RS05400 at 172.519 kb on - strand, within HMPREF1058_RS05400 at 172.519 kb on - strand, within HMPREF1058_RS05400 at 172.519 kb on - strand, within HMPREF1058_RS05400 at 172.543 kb on + strand, within HMPREF1058_RS05400 at 172.836 kb on - strand, within HMPREF1058_RS05400 at 173.142 kb on + strand, within HMPREF1058_RS05400 at 173.143 kb on - strand, within HMPREF1058_RS05400 at 173.212 kb on - strand, within HMPREF1058_RS05400 at 173.297 kb on + strand, within HMPREF1058_RS05400 at 173.297 kb on + strand, within HMPREF1058_RS05400 at 173.298 kb on - strand, within HMPREF1058_RS05400 at 173.322 kb on + strand, within HMPREF1058_RS05400 at 173.344 kb on + strand, within HMPREF1058_RS05400 at 173.353 kb on + strand, within HMPREF1058_RS05400 at 173.354 kb on - strand, within HMPREF1058_RS05400 at 173.433 kb on - strand at 173.434 kb on + strand, within HMPREF1058_RS05400 at 173.434 kb on + strand, within HMPREF1058_RS05400 at 173.434 kb on + strand, within HMPREF1058_RS05400 at 173.435 kb on - strand, within HMPREF1058_RS05400 at 173.455 kb on - strand, within HMPREF1058_RS05400 at 173.468 kb on - strand, within HMPREF1058_RS05400 at 173.468 kb on - strand, within HMPREF1058_RS05400 at 173.468 kb on - strand, within HMPREF1058_RS05400 at 173.491 kb on + strand, within HMPREF1058_RS05400 at 173.492 kb on + strand, within HMPREF1058_RS05400 at 173.547 kb on - strand, within HMPREF1058_RS05400 at 173.555 kb on + strand, within HMPREF1058_RS05400 at 173.559 kb on + strand, within HMPREF1058_RS05400 at 173.559 kb on + strand, within HMPREF1058_RS05400 at 173.736 kb on + strand, within HMPREF1058_RS05400 at 173.737 kb on - strand, within HMPREF1058_RS05400 at 173.739 kb on + strand, within HMPREF1058_RS05400 at 173.739 kb on + strand, within HMPREF1058_RS05400 at 173.739 kb on + strand, within HMPREF1058_RS05400 at 173.740 kb on - strand, within HMPREF1058_RS05400 at 173.740 kb on - strand, within HMPREF1058_RS05400 at 173.824 kb on - strand, within HMPREF1058_RS05400 at 173.902 kb on + strand, within HMPREF1058_RS05400 at 174.033 kb on - strand, within HMPREF1058_RS05400 at 174.124 kb on - strand, within HMPREF1058_RS05400 at 174.225 kb on + strand, within HMPREF1058_RS05400 at 174.334 kb on - strand at 174.376 kb on + strand at 174.377 kb on - strand at 174.379 kb on + strand at 174.418 kb on + strand at 174.517 kb on + strand at 174.517 kb on + strand at 174.523 kb on - strand at 174.548 kb on - strand at 174.714 kb on - strand at 174.756 kb on - strand, within HMPREF1058_RS05395 at 174.869 kb on - strand, within HMPREF1058_RS05395 at 174.873 kb on + strand, within HMPREF1058_RS05395 at 174.873 kb on + strand, within HMPREF1058_RS05395 at 175.119 kb on + strand, within HMPREF1058_RS05395 at 175.321 kb on - strand, within HMPREF1058_RS05395 at 175.330 kb on + strand, within HMPREF1058_RS05395 at 175.376 kb on + strand, within HMPREF1058_RS05395 at 175.380 kb on + strand, within HMPREF1058_RS05395 at 175.381 kb on - strand, within HMPREF1058_RS05395 at 175.443 kb on + strand, within HMPREF1058_RS05395 at 175.443 kb on + strand, within HMPREF1058_RS05395 at 175.448 kb on - strand, within HMPREF1058_RS05395 at 175.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 171,241 + +0.5 171,242 - -0.0 171,243 + +1.8 171,405 - HMPREF1058_RS05405 0.18 -1.4 171,430 - HMPREF1058_RS05405 0.21 +0.3 171,532 - -1.0 171,597 - HMPREF1058_RS05405 0.38 +0.8 171,647 + HMPREF1058_RS05405 0.43 +0.2 171,648 - HMPREF1058_RS05405 0.43 +0.9 171,652 + HMPREF1058_RS05405 0.43 -0.5 171,932 + HMPREF1058_RS05405 0.72 -0.2 171,934 + HMPREF1058_RS05405 0.72 +1.0 171,935 - HMPREF1058_RS05405 0.72 -2.3 171,935 - HMPREF1058_RS05405 0.72 +1.6 171,935 - HMPREF1058_RS05405 0.72 +0.3 171,935 - HMPREF1058_RS05405 0.72 +0.1 172,036 - HMPREF1058_RS05405 0.82 -0.4 172,036 - HMPREF1058_RS05405 0.82 -1.4 172,109 + HMPREF1058_RS05405 0.89 -0.9 172,288 - +0.7 172,324 - -1.4 172,408 - -2.2 172,518 + HMPREF1058_RS05400 0.13 +1.2 172,519 - HMPREF1058_RS05400 0.13 +0.3 172,519 - HMPREF1058_RS05400 0.13 +0.7 172,519 - HMPREF1058_RS05400 0.13 +0.5 172,519 - HMPREF1058_RS05400 0.13 -1.3 172,543 + HMPREF1058_RS05400 0.14 -0.3 172,836 - HMPREF1058_RS05400 0.27 -0.2 173,142 + HMPREF1058_RS05400 0.41 -1.3 173,143 - HMPREF1058_RS05400 0.41 +0.5 173,212 - HMPREF1058_RS05400 0.44 -3.1 173,297 + HMPREF1058_RS05400 0.48 +0.3 173,297 + HMPREF1058_RS05400 0.48 -0.1 173,298 - HMPREF1058_RS05400 0.48 +0.8 173,322 + HMPREF1058_RS05400 0.49 -0.2 173,344 + HMPREF1058_RS05400 0.50 +0.7 173,353 + HMPREF1058_RS05400 0.50 +0.8 173,354 - HMPREF1058_RS05400 0.50 -0.7 173,433 - -0.7 173,434 + HMPREF1058_RS05400 0.54 +2.8 173,434 + HMPREF1058_RS05400 0.54 +3.3 173,434 + HMPREF1058_RS05400 0.54 -0.2 173,435 - HMPREF1058_RS05400 0.54 -0.5 173,455 - HMPREF1058_RS05400 0.55 -1.4 173,468 - HMPREF1058_RS05400 0.55 -1.9 173,468 - HMPREF1058_RS05400 0.55 +2.2 173,468 - HMPREF1058_RS05400 0.55 -0.0 173,491 + HMPREF1058_RS05400 0.56 +0.0 173,492 + HMPREF1058_RS05400 0.56 +0.8 173,547 - HMPREF1058_RS05400 0.59 -0.1 173,555 + HMPREF1058_RS05400 0.59 +1.3 173,559 + HMPREF1058_RS05400 0.59 +0.7 173,559 + HMPREF1058_RS05400 0.59 +4.3 173,736 + HMPREF1058_RS05400 0.67 +0.3 173,737 - HMPREF1058_RS05400 0.67 -0.2 173,739 + HMPREF1058_RS05400 0.67 +0.9 173,739 + HMPREF1058_RS05400 0.67 +1.7 173,739 + HMPREF1058_RS05400 0.67 -0.2 173,740 - HMPREF1058_RS05400 0.67 -0.2 173,740 - HMPREF1058_RS05400 0.67 -1.0 173,824 - HMPREF1058_RS05400 0.71 -0.8 173,902 + HMPREF1058_RS05400 0.75 -1.1 174,033 - HMPREF1058_RS05400 0.80 -1.7 174,124 - HMPREF1058_RS05400 0.84 -1.7 174,225 + HMPREF1058_RS05400 0.89 -0.2 174,334 - -1.9 174,376 + +0.9 174,377 - -1.7 174,379 + +0.8 174,418 + +1.1 174,517 + -0.4 174,517 + +1.1 174,523 - +1.1 174,548 - -0.9 174,714 - -0.5 174,756 - HMPREF1058_RS05395 0.10 -1.0 174,869 - HMPREF1058_RS05395 0.14 -0.8 174,873 + HMPREF1058_RS05395 0.15 +1.7 174,873 + HMPREF1058_RS05395 0.15 +0.7 175,119 + HMPREF1058_RS05395 0.24 +0.5 175,321 - HMPREF1058_RS05395 0.32 -0.6 175,330 + HMPREF1058_RS05395 0.32 +0.4 175,376 + HMPREF1058_RS05395 0.34 +0.2 175,380 + HMPREF1058_RS05395 0.34 +2.8 175,381 - HMPREF1058_RS05395 0.34 -2.0 175,443 + HMPREF1058_RS05395 0.37 -1.6 175,443 + HMPREF1058_RS05395 0.37 -0.7 175,448 - HMPREF1058_RS05395 0.37 -1.0 175,448 - -2.2
Or see this region's nucleotide sequence