Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05175 and HMPREF1058_RS05170 are separated by 125 nucleotides HMPREF1058_RS05170 and HMPREF1058_RS05165 are separated by 492 nucleotides
HMPREF1058_RS05175: HMPREF1058_RS05175 - MATE family efflux transporter, at 221,678 to 223,039
_RS05175
HMPREF1058_RS05170: HMPREF1058_RS05170 - TrkH family potassium uptake protein, at 223,165 to 224,673
_RS05170
HMPREF1058_RS05165: HMPREF1058_RS05165 - efflux RND transporter periplasmic adaptor subunit, at 225,166 to 226,365
_RS05165
Position (kb) 223
224
225 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 222.187 kb on + strand, within HMPREF1058_RS05175 at 222.187 kb on + strand, within HMPREF1058_RS05175 at 222.199 kb on + strand, within HMPREF1058_RS05175 at 222.208 kb on + strand, within HMPREF1058_RS05175 at 222.268 kb on + strand, within HMPREF1058_RS05175 at 222.268 kb on + strand, within HMPREF1058_RS05175 at 222.290 kb on - strand, within HMPREF1058_RS05175 at 222.300 kb on - strand, within HMPREF1058_RS05175 at 222.401 kb on - strand, within HMPREF1058_RS05175 at 222.402 kb on + strand at 222.402 kb on + strand, within HMPREF1058_RS05175 at 222.402 kb on + strand, within HMPREF1058_RS05175 at 222.403 kb on - strand, within HMPREF1058_RS05175 at 222.403 kb on - strand, within HMPREF1058_RS05175 at 222.417 kb on - strand, within HMPREF1058_RS05175 at 222.571 kb on + strand, within HMPREF1058_RS05175 at 222.703 kb on + strand, within HMPREF1058_RS05175 at 222.704 kb on - strand, within HMPREF1058_RS05175 at 222.708 kb on - strand, within HMPREF1058_RS05175 at 222.719 kb on + strand, within HMPREF1058_RS05175 at 222.752 kb on - strand, within HMPREF1058_RS05175 at 222.775 kb on + strand, within HMPREF1058_RS05175 at 222.775 kb on + strand, within HMPREF1058_RS05175 at 222.776 kb on - strand, within HMPREF1058_RS05175 at 222.776 kb on - strand, within HMPREF1058_RS05175 at 222.849 kb on - strand, within HMPREF1058_RS05175 at 222.852 kb on - strand, within HMPREF1058_RS05175 at 222.943 kb on - strand at 222.943 kb on - strand at 222.993 kb on - strand at 223.050 kb on + strand at 223.051 kb on - strand at 223.072 kb on - strand at 223.072 kb on - strand at 223.072 kb on - strand at 223.074 kb on - strand at 223.076 kb on - strand at 223.141 kb on + strand at 223.146 kb on - strand at 223.166 kb on + strand at 223.167 kb on - strand at 223.328 kb on - strand, within HMPREF1058_RS05170 at 223.333 kb on - strand, within HMPREF1058_RS05170 at 223.339 kb on + strand, within HMPREF1058_RS05170 at 223.420 kb on + strand, within HMPREF1058_RS05170 at 223.534 kb on - strand, within HMPREF1058_RS05170 at 223.588 kb on - strand, within HMPREF1058_RS05170 at 223.605 kb on + strand, within HMPREF1058_RS05170 at 223.606 kb on - strand, within HMPREF1058_RS05170 at 223.629 kb on + strand at 223.647 kb on + strand, within HMPREF1058_RS05170 at 223.648 kb on - strand, within HMPREF1058_RS05170 at 223.648 kb on - strand, within HMPREF1058_RS05170 at 223.650 kb on - strand, within HMPREF1058_RS05170 at 223.677 kb on + strand, within HMPREF1058_RS05170 at 223.678 kb on - strand, within HMPREF1058_RS05170 at 223.731 kb on - strand, within HMPREF1058_RS05170 at 223.761 kb on + strand, within HMPREF1058_RS05170 at 223.819 kb on + strand, within HMPREF1058_RS05170 at 223.849 kb on - strand at 223.853 kb on + strand, within HMPREF1058_RS05170 at 223.867 kb on - strand, within HMPREF1058_RS05170 at 223.897 kb on + strand, within HMPREF1058_RS05170 at 223.898 kb on - strand, within HMPREF1058_RS05170 at 223.898 kb on - strand, within HMPREF1058_RS05170 at 223.907 kb on - strand, within HMPREF1058_RS05170 at 223.930 kb on + strand, within HMPREF1058_RS05170 at 223.930 kb on + strand, within HMPREF1058_RS05170 at 223.930 kb on + strand, within HMPREF1058_RS05170 at 223.931 kb on - strand, within HMPREF1058_RS05170 at 223.936 kb on - strand, within HMPREF1058_RS05170 at 223.962 kb on + strand, within HMPREF1058_RS05170 at 223.972 kb on - strand, within HMPREF1058_RS05170 at 223.987 kb on + strand, within HMPREF1058_RS05170 at 224.054 kb on + strand, within HMPREF1058_RS05170 at 224.054 kb on + strand, within HMPREF1058_RS05170 at 224.054 kb on + strand, within HMPREF1058_RS05170 at 224.055 kb on - strand, within HMPREF1058_RS05170 at 224.055 kb on - strand, within HMPREF1058_RS05170 at 224.055 kb on - strand, within HMPREF1058_RS05170 at 224.055 kb on - strand, within HMPREF1058_RS05170 at 224.055 kb on - strand, within HMPREF1058_RS05170 at 224.056 kb on + strand, within HMPREF1058_RS05170 at 224.057 kb on - strand, within HMPREF1058_RS05170 at 224.057 kb on - strand, within HMPREF1058_RS05170 at 224.143 kb on + strand, within HMPREF1058_RS05170 at 224.206 kb on + strand, within HMPREF1058_RS05170 at 224.258 kb on - strand, within HMPREF1058_RS05170 at 224.258 kb on - strand, within HMPREF1058_RS05170 at 224.270 kb on - strand, within HMPREF1058_RS05170 at 224.491 kb on - strand, within HMPREF1058_RS05170 at 224.491 kb on - strand, within HMPREF1058_RS05170 at 224.494 kb on + strand, within HMPREF1058_RS05170 at 224.494 kb on + strand, within HMPREF1058_RS05170 at 224.494 kb on + strand, within HMPREF1058_RS05170 at 224.528 kb on - strand at 224.557 kb on - strand at 224.576 kb on - strand at 224.607 kb on + strand at 224.619 kb on + strand at 224.619 kb on + strand at 224.643 kb on - strand at 224.643 kb on - strand at 224.644 kb on + strand at 224.645 kb on - strand at 224.769 kb on - strand at 224.778 kb on + strand at 224.779 kb on - strand at 224.782 kb on + strand at 224.783 kb on - strand at 224.873 kb on - strand at 224.893 kb on + strand at 224.948 kb on + strand at 225.014 kb on - strand at 225.181 kb on - strand at 225.224 kb on + strand at 225.228 kb on - strand at 225.231 kb on - strand at 225.243 kb on - strand at 225.257 kb on - strand at 225.341 kb on + strand, within HMPREF1058_RS05165 at 225.390 kb on - strand, within HMPREF1058_RS05165 at 225.438 kb on + strand, within HMPREF1058_RS05165 at 225.442 kb on + strand, within HMPREF1058_RS05165 at 225.442 kb on + strand, within HMPREF1058_RS05165 at 225.443 kb on - strand, within HMPREF1058_RS05165 at 225.443 kb on - strand, within HMPREF1058_RS05165 at 225.563 kb on + strand, within HMPREF1058_RS05165 at 225.570 kb on + strand, within HMPREF1058_RS05165
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 222,187 + HMPREF1058_RS05175 0.37 +1.4 222,187 + HMPREF1058_RS05175 0.37 +1.5 222,199 + HMPREF1058_RS05175 0.38 +1.1 222,208 + HMPREF1058_RS05175 0.39 -0.3 222,268 + HMPREF1058_RS05175 0.43 +0.1 222,268 + HMPREF1058_RS05175 0.43 +0.3 222,290 - HMPREF1058_RS05175 0.45 -0.8 222,300 - HMPREF1058_RS05175 0.46 -2.2 222,401 - HMPREF1058_RS05175 0.53 +0.4 222,402 + -1.3 222,402 + HMPREF1058_RS05175 0.53 -0.6 222,402 + HMPREF1058_RS05175 0.53 +2.6 222,403 - HMPREF1058_RS05175 0.53 +1.5 222,403 - HMPREF1058_RS05175 0.53 +0.1 222,417 - HMPREF1058_RS05175 0.54 -0.6 222,571 + HMPREF1058_RS05175 0.66 -1.1 222,703 + HMPREF1058_RS05175 0.75 +1.3 222,704 - HMPREF1058_RS05175 0.75 -2.0 222,708 - HMPREF1058_RS05175 0.76 -0.2 222,719 + HMPREF1058_RS05175 0.76 +1.5 222,752 - HMPREF1058_RS05175 0.79 +0.2 222,775 + HMPREF1058_RS05175 0.81 +0.8 222,775 + HMPREF1058_RS05175 0.81 +0.5 222,776 - HMPREF1058_RS05175 0.81 +1.2 222,776 - HMPREF1058_RS05175 0.81 -1.7 222,849 - HMPREF1058_RS05175 0.86 -0.7 222,852 - HMPREF1058_RS05175 0.86 -1.5 222,943 - +0.6 222,943 - -0.7 222,993 - -0.2 223,050 + -1.6 223,051 - -1.0 223,072 - -0.7 223,072 - +2.2 223,072 - +0.1 223,074 - +0.3 223,076 - -1.2 223,141 + -2.2 223,146 - -0.8 223,166 + -1.1 223,167 - -0.2 223,328 - HMPREF1058_RS05170 0.11 +0.8 223,333 - HMPREF1058_RS05170 0.11 -0.9 223,339 + HMPREF1058_RS05170 0.12 +0.8 223,420 + HMPREF1058_RS05170 0.17 +0.3 223,534 - HMPREF1058_RS05170 0.24 -1.2 223,588 - HMPREF1058_RS05170 0.28 -1.8 223,605 + HMPREF1058_RS05170 0.29 +0.6 223,606 - HMPREF1058_RS05170 0.29 +0.4 223,629 + +1.0 223,647 + HMPREF1058_RS05170 0.32 +0.3 223,648 - HMPREF1058_RS05170 0.32 -0.2 223,648 - HMPREF1058_RS05170 0.32 +0.6 223,650 - HMPREF1058_RS05170 0.32 -0.3 223,677 + HMPREF1058_RS05170 0.34 -0.5 223,678 - HMPREF1058_RS05170 0.34 -0.4 223,731 - HMPREF1058_RS05170 0.38 +0.2 223,761 + HMPREF1058_RS05170 0.39 +1.4 223,819 + HMPREF1058_RS05170 0.43 +0.5 223,849 - -0.7 223,853 + HMPREF1058_RS05170 0.46 +2.4 223,867 - HMPREF1058_RS05170 0.47 +1.7 223,897 + HMPREF1058_RS05170 0.49 +0.1 223,898 - HMPREF1058_RS05170 0.49 -0.4 223,898 - HMPREF1058_RS05170 0.49 +0.6 223,907 - HMPREF1058_RS05170 0.49 -0.2 223,930 + HMPREF1058_RS05170 0.51 -0.5 223,930 + HMPREF1058_RS05170 0.51 +0.5 223,930 + HMPREF1058_RS05170 0.51 +2.4 223,931 - HMPREF1058_RS05170 0.51 -0.7 223,936 - HMPREF1058_RS05170 0.51 -0.1 223,962 + HMPREF1058_RS05170 0.53 +0.3 223,972 - HMPREF1058_RS05170 0.53 -0.1 223,987 + HMPREF1058_RS05170 0.54 -0.5 224,054 + HMPREF1058_RS05170 0.59 -1.4 224,054 + HMPREF1058_RS05170 0.59 -0.3 224,054 + HMPREF1058_RS05170 0.59 +0.2 224,055 - HMPREF1058_RS05170 0.59 +1.4 224,055 - HMPREF1058_RS05170 0.59 -0.5 224,055 - HMPREF1058_RS05170 0.59 +0.6 224,055 - HMPREF1058_RS05170 0.59 +0.0 224,055 - HMPREF1058_RS05170 0.59 -0.1 224,056 + HMPREF1058_RS05170 0.59 -0.2 224,057 - HMPREF1058_RS05170 0.59 +0.6 224,057 - HMPREF1058_RS05170 0.59 +0.8 224,143 + HMPREF1058_RS05170 0.65 +0.4 224,206 + HMPREF1058_RS05170 0.69 +0.3 224,258 - HMPREF1058_RS05170 0.72 -0.9 224,258 - HMPREF1058_RS05170 0.72 -0.1 224,270 - HMPREF1058_RS05170 0.73 +0.6 224,491 - HMPREF1058_RS05170 0.88 +0.3 224,491 - HMPREF1058_RS05170 0.88 +1.7 224,494 + HMPREF1058_RS05170 0.88 +0.7 224,494 + HMPREF1058_RS05170 0.88 +0.0 224,494 + HMPREF1058_RS05170 0.88 +0.3 224,528 - +0.7 224,557 - +0.5 224,576 - -0.5 224,607 + -0.4 224,619 + +1.7 224,619 + +0.6 224,643 - +1.0 224,643 - -0.2 224,644 + +0.4 224,645 - -1.7 224,769 - +1.0 224,778 + +1.1 224,779 - -0.2 224,782 + +0.8 224,783 - -2.0 224,873 - +0.3 224,893 + +0.7 224,948 + +0.5 225,014 - -0.6 225,181 - +0.1 225,224 + -0.1 225,228 - -1.0 225,231 - -0.6 225,243 - +1.3 225,257 - -0.1 225,341 + HMPREF1058_RS05165 0.15 -0.3 225,390 - HMPREF1058_RS05165 0.19 -1.5 225,438 + HMPREF1058_RS05165 0.23 -0.9 225,442 + HMPREF1058_RS05165 0.23 -1.1 225,442 + HMPREF1058_RS05165 0.23 -3.9 225,443 - HMPREF1058_RS05165 0.23 -1.6 225,443 - HMPREF1058_RS05165 0.23 +0.1 225,563 + HMPREF1058_RS05165 0.33 -0.2 225,570 + HMPREF1058_RS05165 0.34 +0.6
Or see this region's nucleotide sequence