Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04705 and HMPREF1058_RS04700 overlap by 1 nucleotides HMPREF1058_RS04700 and HMPREF1058_RS04695 are separated by 97 nucleotides HMPREF1058_RS04695 and HMPREF1058_RS04690 are separated by 24 nucleotides HMPREF1058_RS04690 and HMPREF1058_RS04685 are separated by 205 nucleotides
HMPREF1058_RS04705: HMPREF1058_RS04705 - aminoacyl-tRNA hydrolase, at 330,135 to 330,698
_RS04705
HMPREF1058_RS04700: HMPREF1058_RS04700 - RNA-binding S4 domain-containing protein, at 330,698 to 331,126
_RS04700
HMPREF1058_RS04695: HMPREF1058_RS04695 - HIT family protein, at 331,224 to 331,649
_RS04695
HMPREF1058_RS04690: HMPREF1058_RS04690 - cation:proton antiporter, at 331,674 to 333,941
_RS04690
HMPREF1058_RS04685: HMPREF1058_RS04685 - glycine cleavage system aminomethyltransferase GcvT, at 334,147 to 335,232
_RS04685
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 330.719 kb on - strand at 330.740 kb on - strand at 330.740 kb on - strand at 330.754 kb on + strand, within HMPREF1058_RS04700 at 330.758 kb on - strand, within HMPREF1058_RS04700 at 330.872 kb on + strand, within HMPREF1058_RS04700 at 330.897 kb on + strand, within HMPREF1058_RS04700 at 330.907 kb on + strand, within HMPREF1058_RS04700 at 330.907 kb on + strand, within HMPREF1058_RS04700 at 330.908 kb on - strand, within HMPREF1058_RS04700 at 330.908 kb on - strand, within HMPREF1058_RS04700 at 330.909 kb on + strand, within HMPREF1058_RS04700 at 330.909 kb on + strand, within HMPREF1058_RS04700 at 330.910 kb on - strand, within HMPREF1058_RS04700 at 330.910 kb on - strand, within HMPREF1058_RS04700 at 331.124 kb on + strand at 331.125 kb on - strand at 331.158 kb on - strand at 331.158 kb on - strand at 331.168 kb on + strand at 331.169 kb on - strand at 331.197 kb on - strand at 331.200 kb on - strand at 331.203 kb on + strand at 331.203 kb on + strand at 331.203 kb on + strand at 331.203 kb on + strand at 331.204 kb on - strand at 331.226 kb on - strand at 331.241 kb on + strand at 331.306 kb on - strand, within HMPREF1058_RS04695 at 331.334 kb on - strand, within HMPREF1058_RS04695 at 331.376 kb on + strand, within HMPREF1058_RS04695 at 331.377 kb on - strand, within HMPREF1058_RS04695 at 331.378 kb on + strand, within HMPREF1058_RS04695 at 331.378 kb on + strand, within HMPREF1058_RS04695 at 331.379 kb on - strand, within HMPREF1058_RS04695 at 331.460 kb on + strand, within HMPREF1058_RS04695 at 331.461 kb on - strand, within HMPREF1058_RS04695 at 331.494 kb on + strand, within HMPREF1058_RS04695 at 331.554 kb on + strand, within HMPREF1058_RS04695 at 331.591 kb on - strand, within HMPREF1058_RS04695 at 331.621 kb on + strand at 331.622 kb on - strand at 331.663 kb on - strand at 331.772 kb on + strand at 331.794 kb on - strand at 331.881 kb on - strand at 331.888 kb on - strand at 332.007 kb on + strand, within HMPREF1058_RS04690 at 332.031 kb on + strand, within HMPREF1058_RS04690 at 332.032 kb on - strand, within HMPREF1058_RS04690 at 332.032 kb on - strand, within HMPREF1058_RS04690 at 332.049 kb on - strand, within HMPREF1058_RS04690 at 332.054 kb on + strand, within HMPREF1058_RS04690 at 332.054 kb on + strand, within HMPREF1058_RS04690 at 332.055 kb on - strand, within HMPREF1058_RS04690 at 332.075 kb on + strand, within HMPREF1058_RS04690 at 332.075 kb on + strand, within HMPREF1058_RS04690 at 332.076 kb on - strand, within HMPREF1058_RS04690 at 332.088 kb on + strand, within HMPREF1058_RS04690 at 332.089 kb on - strand, within HMPREF1058_RS04690 at 332.096 kb on - strand, within HMPREF1058_RS04690 at 332.099 kb on + strand, within HMPREF1058_RS04690 at 332.100 kb on - strand, within HMPREF1058_RS04690 at 332.126 kb on + strand, within HMPREF1058_RS04690 at 332.126 kb on + strand, within HMPREF1058_RS04690 at 332.175 kb on + strand, within HMPREF1058_RS04690 at 332.285 kb on + strand, within HMPREF1058_RS04690 at 332.286 kb on - strand, within HMPREF1058_RS04690 at 332.322 kb on - strand, within HMPREF1058_RS04690 at 332.382 kb on + strand, within HMPREF1058_RS04690 at 332.418 kb on - strand, within HMPREF1058_RS04690 at 332.606 kb on + strand, within HMPREF1058_RS04690 at 332.633 kb on + strand, within HMPREF1058_RS04690 at 332.634 kb on - strand, within HMPREF1058_RS04690 at 332.637 kb on + strand at 332.662 kb on - strand, within HMPREF1058_RS04690 at 332.669 kb on + strand, within HMPREF1058_RS04690 at 332.784 kb on - strand, within HMPREF1058_RS04690 at 332.784 kb on - strand, within HMPREF1058_RS04690 at 332.808 kb on + strand, within HMPREF1058_RS04690 at 332.809 kb on - strand, within HMPREF1058_RS04690 at 332.809 kb on - strand, within HMPREF1058_RS04690 at 332.835 kb on - strand, within HMPREF1058_RS04690 at 332.865 kb on + strand, within HMPREF1058_RS04690 at 332.880 kb on + strand, within HMPREF1058_RS04690 at 333.054 kb on + strand, within HMPREF1058_RS04690 at 333.056 kb on + strand, within HMPREF1058_RS04690 at 333.056 kb on + strand, within HMPREF1058_RS04690 at 333.056 kb on + strand, within HMPREF1058_RS04690 at 333.058 kb on + strand, within HMPREF1058_RS04690 at 333.059 kb on - strand, within HMPREF1058_RS04690 at 333.064 kb on - strand, within HMPREF1058_RS04690 at 333.153 kb on - strand, within HMPREF1058_RS04690 at 333.182 kb on + strand, within HMPREF1058_RS04690 at 333.194 kb on + strand, within HMPREF1058_RS04690 at 333.240 kb on + strand, within HMPREF1058_RS04690 at 333.241 kb on - strand, within HMPREF1058_RS04690 at 333.331 kb on + strand, within HMPREF1058_RS04690 at 333.335 kb on + strand, within HMPREF1058_RS04690 at 333.336 kb on - strand, within HMPREF1058_RS04690 at 333.336 kb on - strand, within HMPREF1058_RS04690 at 333.354 kb on + strand, within HMPREF1058_RS04690 at 333.355 kb on - strand, within HMPREF1058_RS04690 at 333.355 kb on - strand, within HMPREF1058_RS04690 at 333.383 kb on + strand, within HMPREF1058_RS04690 at 333.383 kb on + strand, within HMPREF1058_RS04690 at 333.383 kb on + strand, within HMPREF1058_RS04690 at 333.384 kb on - strand, within HMPREF1058_RS04690 at 333.384 kb on - strand, within HMPREF1058_RS04690 at 333.386 kb on - strand, within HMPREF1058_RS04690 at 333.388 kb on - strand, within HMPREF1058_RS04690 at 333.437 kb on + strand, within HMPREF1058_RS04690 at 333.437 kb on + strand, within HMPREF1058_RS04690 at 333.437 kb on + strand, within HMPREF1058_RS04690 at 333.438 kb on - strand, within HMPREF1058_RS04690 at 333.459 kb on + strand, within HMPREF1058_RS04690 at 333.459 kb on + strand, within HMPREF1058_RS04690 at 333.460 kb on - strand, within HMPREF1058_RS04690 at 333.538 kb on + strand, within HMPREF1058_RS04690 at 333.542 kb on + strand, within HMPREF1058_RS04690 at 333.569 kb on + strand, within HMPREF1058_RS04690 at 333.636 kb on + strand, within HMPREF1058_RS04690 at 333.649 kb on - strand, within HMPREF1058_RS04690 at 333.649 kb on - strand, within HMPREF1058_RS04690 at 333.649 kb on - strand, within HMPREF1058_RS04690 at 333.656 kb on + strand, within HMPREF1058_RS04690 at 333.761 kb on + strand at 333.761 kb on + strand at 333.761 kb on + strand at 333.761 kb on + strand at 333.762 kb on - strand at 333.918 kb on + strand at 333.941 kb on + strand at 333.941 kb on + strand at 333.945 kb on + strand at 333.988 kb on + strand at 334.001 kb on - strand at 334.001 kb on - strand at 334.055 kb on + strand at 334.055 kb on + strand at 334.056 kb on - strand at 334.068 kb on + strand at 334.068 kb on + strand at 334.101 kb on - strand at 334.168 kb on + strand at 334.172 kb on - strand at 334.211 kb on - strand at 334.223 kb on - strand at 334.233 kb on - strand at 334.297 kb on + strand, within HMPREF1058_RS04685 at 334.306 kb on + strand, within HMPREF1058_RS04685 at 334.328 kb on - strand, within HMPREF1058_RS04685 at 334.494 kb on + strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.548 kb on + strand, within HMPREF1058_RS04685 at 334.570 kb on - strand, within HMPREF1058_RS04685 at 334.575 kb on + strand, within HMPREF1058_RS04685 at 334.644 kb on - strand, within HMPREF1058_RS04685 at 334.730 kb on + strand, within HMPREF1058_RS04685 at 334.731 kb on - strand, within HMPREF1058_RS04685 at 334.914 kb on - strand at 334.934 kb on + strand, within HMPREF1058_RS04685 at 334.935 kb on - strand, within HMPREF1058_RS04685 at 334.935 kb on - strand, within HMPREF1058_RS04685 at 334.936 kb on + strand, within HMPREF1058_RS04685 at 334.936 kb on + strand, within HMPREF1058_RS04685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 330,719 - +0.3 330,740 - +0.3 330,740 - -0.7 330,754 + HMPREF1058_RS04700 0.13 +1.1 330,758 - HMPREF1058_RS04700 0.14 -0.3 330,872 + HMPREF1058_RS04700 0.41 -0.4 330,897 + HMPREF1058_RS04700 0.46 -0.2 330,907 + HMPREF1058_RS04700 0.49 -1.1 330,907 + HMPREF1058_RS04700 0.49 -0.8 330,908 - HMPREF1058_RS04700 0.49 +2.3 330,908 - HMPREF1058_RS04700 0.49 -1.6 330,909 + HMPREF1058_RS04700 0.49 -1.1 330,909 + HMPREF1058_RS04700 0.49 -0.7 330,910 - HMPREF1058_RS04700 0.49 -0.8 330,910 - HMPREF1058_RS04700 0.49 -0.7 331,124 + -2.2 331,125 - -0.3 331,158 - +0.3 331,158 - -2.2 331,168 + +0.0 331,169 - +0.3 331,197 - -0.5 331,200 - -0.8 331,203 + +0.3 331,203 + -1.2 331,203 + +1.3 331,203 + -1.1 331,204 - -2.0 331,226 - -0.2 331,241 + -1.4 331,306 - HMPREF1058_RS04695 0.19 -0.0 331,334 - HMPREF1058_RS04695 0.26 -1.1 331,376 + HMPREF1058_RS04695 0.36 -0.0 331,377 - HMPREF1058_RS04695 0.36 -1.5 331,378 + HMPREF1058_RS04695 0.36 +0.5 331,378 + HMPREF1058_RS04695 0.36 -0.8 331,379 - HMPREF1058_RS04695 0.36 -1.4 331,460 + HMPREF1058_RS04695 0.55 -0.2 331,461 - HMPREF1058_RS04695 0.56 -2.0 331,494 + HMPREF1058_RS04695 0.63 -0.9 331,554 + HMPREF1058_RS04695 0.77 -0.1 331,591 - HMPREF1058_RS04695 0.86 +0.7 331,621 + -0.9 331,622 - -0.5 331,663 - -1.0 331,772 + -1.9 331,794 - -1.0 331,881 - -0.5 331,888 - -1.6 332,007 + HMPREF1058_RS04690 0.15 -0.7 332,031 + HMPREF1058_RS04690 0.16 -0.7 332,032 - HMPREF1058_RS04690 0.16 -2.1 332,032 - HMPREF1058_RS04690 0.16 -3.9 332,049 - HMPREF1058_RS04690 0.17 -1.7 332,054 + HMPREF1058_RS04690 0.17 +0.0 332,054 + HMPREF1058_RS04690 0.17 -2.0 332,055 - HMPREF1058_RS04690 0.17 -0.4 332,075 + HMPREF1058_RS04690 0.18 -1.2 332,075 + HMPREF1058_RS04690 0.18 -1.7 332,076 - HMPREF1058_RS04690 0.18 -1.5 332,088 + HMPREF1058_RS04690 0.18 -0.4 332,089 - HMPREF1058_RS04690 0.18 -0.7 332,096 - HMPREF1058_RS04690 0.19 -0.7 332,099 + HMPREF1058_RS04690 0.19 -0.5 332,100 - HMPREF1058_RS04690 0.19 -3.1 332,126 + HMPREF1058_RS04690 0.20 -2.0 332,126 + HMPREF1058_RS04690 0.20 -0.2 332,175 + HMPREF1058_RS04690 0.22 -1.9 332,285 + HMPREF1058_RS04690 0.27 -3.2 332,286 - HMPREF1058_RS04690 0.27 -2.2 332,322 - HMPREF1058_RS04690 0.29 -0.3 332,382 + HMPREF1058_RS04690 0.31 -2.6 332,418 - HMPREF1058_RS04690 0.33 -1.7 332,606 + HMPREF1058_RS04690 0.41 -2.2 332,633 + HMPREF1058_RS04690 0.42 -0.4 332,634 - HMPREF1058_RS04690 0.42 -2.5 332,637 + +1.8 332,662 - HMPREF1058_RS04690 0.44 -0.7 332,669 + HMPREF1058_RS04690 0.44 -2.3 332,784 - HMPREF1058_RS04690 0.49 -1.7 332,784 - HMPREF1058_RS04690 0.49 -1.1 332,808 + HMPREF1058_RS04690 0.50 +0.0 332,809 - HMPREF1058_RS04690 0.50 -1.2 332,809 - HMPREF1058_RS04690 0.50 -0.6 332,835 - HMPREF1058_RS04690 0.51 -0.9 332,865 + HMPREF1058_RS04690 0.53 -1.3 332,880 + HMPREF1058_RS04690 0.53 -1.4 333,054 + HMPREF1058_RS04690 0.61 -0.0 333,056 + HMPREF1058_RS04690 0.61 -1.4 333,056 + HMPREF1058_RS04690 0.61 -1.5 333,056 + HMPREF1058_RS04690 0.61 -0.2 333,058 + HMPREF1058_RS04690 0.61 -0.2 333,059 - HMPREF1058_RS04690 0.61 -0.7 333,064 - HMPREF1058_RS04690 0.61 -0.7 333,153 - HMPREF1058_RS04690 0.65 -0.3 333,182 + HMPREF1058_RS04690 0.66 -0.2 333,194 + HMPREF1058_RS04690 0.67 -1.4 333,240 + HMPREF1058_RS04690 0.69 -1.0 333,241 - HMPREF1058_RS04690 0.69 -1.7 333,331 + HMPREF1058_RS04690 0.73 +1.6 333,335 + HMPREF1058_RS04690 0.73 -1.6 333,336 - HMPREF1058_RS04690 0.73 -1.7 333,336 - HMPREF1058_RS04690 0.73 -1.3 333,354 + HMPREF1058_RS04690 0.74 -3.2 333,355 - HMPREF1058_RS04690 0.74 -2.1 333,355 - HMPREF1058_RS04690 0.74 -1.7 333,383 + HMPREF1058_RS04690 0.75 -1.1 333,383 + HMPREF1058_RS04690 0.75 -3.8 333,383 + HMPREF1058_RS04690 0.75 -1.3 333,384 - HMPREF1058_RS04690 0.75 -2.3 333,384 - HMPREF1058_RS04690 0.75 -0.8 333,386 - HMPREF1058_RS04690 0.75 -2.8 333,388 - HMPREF1058_RS04690 0.76 -1.3 333,437 + HMPREF1058_RS04690 0.78 +1.8 333,437 + HMPREF1058_RS04690 0.78 -0.2 333,437 + HMPREF1058_RS04690 0.78 -1.5 333,438 - HMPREF1058_RS04690 0.78 -1.5 333,459 + HMPREF1058_RS04690 0.79 -0.8 333,459 + HMPREF1058_RS04690 0.79 +0.6 333,460 - HMPREF1058_RS04690 0.79 -1.5 333,538 + HMPREF1058_RS04690 0.82 -1.5 333,542 + HMPREF1058_RS04690 0.82 -1.2 333,569 + HMPREF1058_RS04690 0.84 +1.0 333,636 + HMPREF1058_RS04690 0.87 -2.6 333,649 - HMPREF1058_RS04690 0.87 -2.0 333,649 - HMPREF1058_RS04690 0.87 -1.3 333,649 - HMPREF1058_RS04690 0.87 +1.8 333,656 + HMPREF1058_RS04690 0.87 -2.8 333,761 + -0.8 333,761 + -2.1 333,761 + -0.4 333,761 + -1.2 333,762 - -0.5 333,918 + -2.2 333,941 + -1.2 333,941 + -1.0 333,945 + -1.5 333,988 + -0.8 334,001 - +2.1 334,001 - +0.0 334,055 + -1.0 334,055 + -1.6 334,056 - +0.6 334,068 + +1.0 334,068 + +0.5 334,101 - -0.3 334,168 + +3.4 334,172 - -0.1 334,211 - -0.4 334,223 - +0.6 334,233 - +2.8 334,297 + HMPREF1058_RS04685 0.14 +1.4 334,306 + HMPREF1058_RS04685 0.15 -0.9 334,328 - HMPREF1058_RS04685 0.17 +0.7 334,494 + HMPREF1058_RS04685 0.32 +1.1 334,495 - HMPREF1058_RS04685 0.32 +0.6 334,495 - HMPREF1058_RS04685 0.32 +0.5 334,495 - HMPREF1058_RS04685 0.32 -0.6 334,548 + HMPREF1058_RS04685 0.37 +1.8 334,570 - HMPREF1058_RS04685 0.39 +1.0 334,575 + HMPREF1058_RS04685 0.39 -0.5 334,644 - HMPREF1058_RS04685 0.46 +0.7 334,730 + HMPREF1058_RS04685 0.54 -0.7 334,731 - HMPREF1058_RS04685 0.54 +1.2 334,914 - +3.4 334,934 + HMPREF1058_RS04685 0.72 +1.8 334,935 - HMPREF1058_RS04685 0.73 +1.1 334,935 - HMPREF1058_RS04685 0.73 +0.8 334,936 + HMPREF1058_RS04685 0.73 +1.6 334,936 + HMPREF1058_RS04685 0.73 +1.0
Or see this region's nucleotide sequence