Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04365

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04370 and HMPREF1058_RS04365 are separated by 48 nucleotidesHMPREF1058_RS04365 and HMPREF1058_RS04360 are separated by 64 nucleotidesHMPREF1058_RS04360 and HMPREF1058_RS04355 are separated by 193 nucleotides HMPREF1058_RS04370: HMPREF1058_RS04370 - agmatine deiminase family protein, at 49,872 to 50,903 _RS04370 HMPREF1058_RS04365: HMPREF1058_RS04365 - translocation/assembly module TamB, at 50,952 to 55,412 _RS04365 HMPREF1058_RS04360: HMPREF1058_RS04360 - DUF308 domain-containing protein, at 55,477 to 56,040 _RS04360 HMPREF1058_RS04355: HMPREF1058_RS04355 - sodium:proton antiporter, at 56,234 to 57,685 _RS04355 Position (kb) 50 51 52 53 54 55 56Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 49.953 kb on + strandat 49.954 kb on - strandat 49.956 kb on + strandat 49.956 kb on + strandat 50.004 kb on - strand, within HMPREF1058_RS04370at 50.023 kb on + strand, within HMPREF1058_RS04370at 50.068 kb on + strand, within HMPREF1058_RS04370at 50.101 kb on + strand, within HMPREF1058_RS04370at 50.169 kb on + strand, within HMPREF1058_RS04370at 50.170 kb on - strand, within HMPREF1058_RS04370at 50.233 kb on + strand, within HMPREF1058_RS04370at 50.234 kb on - strand, within HMPREF1058_RS04370at 50.234 kb on - strand, within HMPREF1058_RS04370at 50.322 kb on + strand, within HMPREF1058_RS04370at 50.322 kb on + strand, within HMPREF1058_RS04370at 50.334 kb on + strand, within HMPREF1058_RS04370at 50.545 kb on + strand, within HMPREF1058_RS04370at 50.701 kb on + strand, within HMPREF1058_RS04370at 50.701 kb on + strand, within HMPREF1058_RS04370at 50.709 kb on + strand, within HMPREF1058_RS04370at 50.709 kb on + strand, within HMPREF1058_RS04370at 50.714 kb on + strand, within HMPREF1058_RS04370at 50.714 kb on + strand, within HMPREF1058_RS04370at 50.714 kb on + strand, within HMPREF1058_RS04370at 50.715 kb on - strand, within HMPREF1058_RS04370at 50.715 kb on - strand, within HMPREF1058_RS04370at 50.818 kb on + strandat 50.818 kb on + strandat 50.819 kb on - strandat 50.851 kb on - strandat 50.891 kb on - strandat 50.904 kb on - strandat 51.074 kb on + strandat 51.107 kb on + strandat 51.108 kb on - strandat 51.109 kb on + strandat 51.257 kb on + strandat 51.257 kb on + strandat 51.313 kb on - strandat 51.350 kb on + strandat 51.350 kb on + strandat 51.351 kb on - strandat 51.351 kb on - strandat 51.351 kb on - strandat 51.375 kb on - strandat 51.375 kb on - strandat 51.436 kb on + strand, within HMPREF1058_RS04365at 51.437 kb on - strand, within HMPREF1058_RS04365at 51.473 kb on + strand, within HMPREF1058_RS04365at 51.503 kb on + strand, within HMPREF1058_RS04365at 51.504 kb on - strand, within HMPREF1058_RS04365at 51.636 kb on + strand, within HMPREF1058_RS04365at 51.673 kb on + strand, within HMPREF1058_RS04365at 51.675 kb on + strand, within HMPREF1058_RS04365at 51.676 kb on - strand, within HMPREF1058_RS04365at 51.760 kb on - strand, within HMPREF1058_RS04365at 51.762 kb on + strand, within HMPREF1058_RS04365at 51.777 kb on + strand, within HMPREF1058_RS04365at 51.777 kb on + strand, within HMPREF1058_RS04365at 51.778 kb on - strand, within HMPREF1058_RS04365at 51.782 kb on + strand, within HMPREF1058_RS04365at 51.785 kb on - strand, within HMPREF1058_RS04365at 51.798 kb on + strand, within HMPREF1058_RS04365at 51.805 kb on + strand, within HMPREF1058_RS04365at 51.805 kb on + strand, within HMPREF1058_RS04365at 51.806 kb on - strand, within HMPREF1058_RS04365at 51.806 kb on - strand, within HMPREF1058_RS04365at 51.806 kb on - strand, within HMPREF1058_RS04365at 51.876 kb on - strand, within HMPREF1058_RS04365at 51.878 kb on + strand, within HMPREF1058_RS04365at 51.879 kb on + strand, within HMPREF1058_RS04365at 51.879 kb on - strand, within HMPREF1058_RS04365at 51.962 kb on + strand, within HMPREF1058_RS04365at 51.990 kb on - strand, within HMPREF1058_RS04365at 51.990 kb on - strand, within HMPREF1058_RS04365at 52.106 kb on + strand, within HMPREF1058_RS04365at 52.106 kb on + strand, within HMPREF1058_RS04365at 52.107 kb on - strand, within HMPREF1058_RS04365at 52.109 kb on - strand, within HMPREF1058_RS04365at 52.179 kb on + strand, within HMPREF1058_RS04365at 52.199 kb on - strand, within HMPREF1058_RS04365at 52.201 kb on - strand, within HMPREF1058_RS04365at 52.201 kb on - strand, within HMPREF1058_RS04365at 52.201 kb on - strand, within HMPREF1058_RS04365at 52.201 kb on - strand, within HMPREF1058_RS04365at 52.221 kb on - strand, within HMPREF1058_RS04365at 52.234 kb on + strand, within HMPREF1058_RS04365at 52.235 kb on - strand, within HMPREF1058_RS04365at 52.243 kb on + strand, within HMPREF1058_RS04365at 52.243 kb on + strand, within HMPREF1058_RS04365at 52.244 kb on - strand, within HMPREF1058_RS04365at 52.266 kb on + strand, within HMPREF1058_RS04365at 52.266 kb on + strand, within HMPREF1058_RS04365at 52.387 kb on - strand, within HMPREF1058_RS04365at 52.387 kb on - strand, within HMPREF1058_RS04365at 52.388 kb on + strand, within HMPREF1058_RS04365at 52.388 kb on + strandat 52.389 kb on - strand, within HMPREF1058_RS04365at 52.392 kb on + strand, within HMPREF1058_RS04365at 52.393 kb on - strand, within HMPREF1058_RS04365at 52.495 kb on + strand, within HMPREF1058_RS04365at 52.495 kb on + strand, within HMPREF1058_RS04365at 52.498 kb on - strand, within HMPREF1058_RS04365at 52.548 kb on + strand, within HMPREF1058_RS04365at 52.549 kb on - strand, within HMPREF1058_RS04365at 52.560 kb on + strand, within HMPREF1058_RS04365at 52.581 kb on - strand, within HMPREF1058_RS04365at 52.581 kb on - strand, within HMPREF1058_RS04365at 52.581 kb on - strand, within HMPREF1058_RS04365at 52.627 kb on + strand, within HMPREF1058_RS04365at 52.627 kb on + strand, within HMPREF1058_RS04365at 52.628 kb on - strand, within HMPREF1058_RS04365at 52.628 kb on - strand, within HMPREF1058_RS04365at 52.870 kb on - strand, within HMPREF1058_RS04365at 52.873 kb on + strand, within HMPREF1058_RS04365at 52.873 kb on + strand, within HMPREF1058_RS04365at 52.874 kb on - strand, within HMPREF1058_RS04365at 52.942 kb on - strand, within HMPREF1058_RS04365at 52.948 kb on + strand, within HMPREF1058_RS04365at 52.951 kb on + strand, within HMPREF1058_RS04365at 53.068 kb on - strand, within HMPREF1058_RS04365at 53.068 kb on - strand, within HMPREF1058_RS04365at 53.073 kb on + strand, within HMPREF1058_RS04365at 53.073 kb on + strand, within HMPREF1058_RS04365at 53.075 kb on + strand, within HMPREF1058_RS04365at 53.146 kb on + strand, within HMPREF1058_RS04365at 53.146 kb on + strand, within HMPREF1058_RS04365at 53.160 kb on - strand, within HMPREF1058_RS04365at 53.416 kb on - strand, within HMPREF1058_RS04365at 53.504 kb on + strand, within HMPREF1058_RS04365at 53.507 kb on + strand, within HMPREF1058_RS04365at 53.515 kb on - strand, within HMPREF1058_RS04365at 53.537 kb on - strand, within HMPREF1058_RS04365at 53.660 kb on + strand, within HMPREF1058_RS04365at 53.961 kb on - strand, within HMPREF1058_RS04365at 53.962 kb on + strand, within HMPREF1058_RS04365at 53.962 kb on + strand, within HMPREF1058_RS04365at 53.963 kb on - strand, within HMPREF1058_RS04365at 53.965 kb on - strand, within HMPREF1058_RS04365at 53.965 kb on - strandat 53.981 kb on + strand, within HMPREF1058_RS04365at 54.003 kb on - strand, within HMPREF1058_RS04365at 54.003 kb on - strand, within HMPREF1058_RS04365at 54.004 kb on + strand, within HMPREF1058_RS04365at 54.018 kb on + strand, within HMPREF1058_RS04365at 54.034 kb on + strand, within HMPREF1058_RS04365at 54.034 kb on + strand, within HMPREF1058_RS04365at 54.034 kb on + strand, within HMPREF1058_RS04365at 54.035 kb on - strand, within HMPREF1058_RS04365at 54.058 kb on + strand, within HMPREF1058_RS04365at 54.400 kb on + strand, within HMPREF1058_RS04365at 54.401 kb on - strand, within HMPREF1058_RS04365at 54.405 kb on - strand, within HMPREF1058_RS04365at 54.425 kb on + strand, within HMPREF1058_RS04365at 54.658 kb on + strand, within HMPREF1058_RS04365at 54.921 kb on + strand, within HMPREF1058_RS04365at 54.923 kb on + strand, within HMPREF1058_RS04365at 54.928 kb on + strand, within HMPREF1058_RS04365at 55.113 kb on - strandat 55.215 kb on - strandat 55.284 kb on - strandat 55.316 kb on - strandat 55.349 kb on - strandat 55.364 kb on + strandat 55.376 kb on + strandat 55.400 kb on + strandat 55.447 kb on + strandat 55.561 kb on - strand, within HMPREF1058_RS04360at 55.562 kb on + strand, within HMPREF1058_RS04360at 55.563 kb on - strand, within HMPREF1058_RS04360at 55.563 kb on - strand, within HMPREF1058_RS04360at 55.563 kb on - strand, within HMPREF1058_RS04360at 55.563 kb on - strand, within HMPREF1058_RS04360at 55.701 kb on + strand, within HMPREF1058_RS04360at 55.772 kb on - strand, within HMPREF1058_RS04360at 55.779 kb on - strand, within HMPREF1058_RS04360at 55.782 kb on + strand, within HMPREF1058_RS04360at 55.804 kb on - strand, within HMPREF1058_RS04360at 55.818 kb on - strand, within HMPREF1058_RS04360at 55.923 kb on - strand, within HMPREF1058_RS04360at 55.952 kb on - strand, within HMPREF1058_RS04360at 56.048 kb on - strandat 56.061 kb on + strandat 56.062 kb on - strandat 56.295 kb on + strandat 56.317 kb on + strandat 56.318 kb on - strandat 56.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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49,953 + +1.9
49,954 - +0.9
49,956 + +1.7
49,956 + -0.4
50,004 - HMPREF1058_RS04370 0.13 +1.9
50,023 + HMPREF1058_RS04370 0.15 +1.9
50,068 + HMPREF1058_RS04370 0.19 +1.9
50,101 + HMPREF1058_RS04370 0.22 +2.7
50,169 + HMPREF1058_RS04370 0.29 +2.4
50,170 - HMPREF1058_RS04370 0.29 +2.3
50,233 + HMPREF1058_RS04370 0.35 +1.2
50,234 - HMPREF1058_RS04370 0.35 +2.3
50,234 - HMPREF1058_RS04370 0.35 +2.0
50,322 + HMPREF1058_RS04370 0.44 -0.3
50,322 + HMPREF1058_RS04370 0.44 +1.2
50,334 + HMPREF1058_RS04370 0.45 -1.7
50,545 + HMPREF1058_RS04370 0.65 +1.5
50,701 + HMPREF1058_RS04370 0.80 +2.0
50,701 + HMPREF1058_RS04370 0.80 +2.1
50,709 + HMPREF1058_RS04370 0.81 +1.5
50,709 + HMPREF1058_RS04370 0.81 +2.4
50,714 + HMPREF1058_RS04370 0.82 +2.6
50,714 + HMPREF1058_RS04370 0.82 -0.4
50,714 + HMPREF1058_RS04370 0.82 +0.2
50,715 - HMPREF1058_RS04370 0.82 +2.9
50,715 - HMPREF1058_RS04370 0.82 +1.3
50,818 + +2.2
50,818 + +1.8
50,819 - +2.9
50,851 - +2.7
50,891 - +0.0
50,904 - -0.2
51,074 + -1.9
51,107 + -1.5
51,108 - -3.5
51,109 + -1.3
51,257 + -1.0
51,257 + -0.4
51,313 - -2.9
51,350 + -1.4
51,350 + -0.7
51,351 - -1.3
51,351 - -1.9
51,351 - -0.6
51,375 - -0.8
51,375 - -1.4
51,436 + HMPREF1058_RS04365 0.11 -0.9
51,437 - HMPREF1058_RS04365 0.11 -3.7
51,473 + HMPREF1058_RS04365 0.12 -1.9
51,503 + HMPREF1058_RS04365 0.12 -0.1
51,504 - HMPREF1058_RS04365 0.12 +0.1
51,636 + HMPREF1058_RS04365 0.15 -0.9
51,673 + HMPREF1058_RS04365 0.16 -2.0
51,675 + HMPREF1058_RS04365 0.16 -2.4
51,676 - HMPREF1058_RS04365 0.16 -2.2
51,760 - HMPREF1058_RS04365 0.18 -2.4
51,762 + HMPREF1058_RS04365 0.18 -0.1
51,777 + HMPREF1058_RS04365 0.18 -0.5
51,777 + HMPREF1058_RS04365 0.18 -1.3
51,778 - HMPREF1058_RS04365 0.19 -3.1
51,782 + HMPREF1058_RS04365 0.19 -3.3
51,785 - HMPREF1058_RS04365 0.19 -1.9
51,798 + HMPREF1058_RS04365 0.19 -3.2
51,805 + HMPREF1058_RS04365 0.19 +0.9
51,805 + HMPREF1058_RS04365 0.19 +0.3
51,806 - HMPREF1058_RS04365 0.19 -1.2
51,806 - HMPREF1058_RS04365 0.19 -0.8
51,806 - HMPREF1058_RS04365 0.19 -1.4
51,876 - HMPREF1058_RS04365 0.21 -1.5
51,878 + HMPREF1058_RS04365 0.21 -2.3
51,879 + HMPREF1058_RS04365 0.21 -0.1
51,879 - HMPREF1058_RS04365 0.21 -0.8
51,962 + HMPREF1058_RS04365 0.23 -0.9
51,990 - HMPREF1058_RS04365 0.23 -0.7
51,990 - HMPREF1058_RS04365 0.23 -1.3
52,106 + HMPREF1058_RS04365 0.26 -1.4
52,106 + HMPREF1058_RS04365 0.26 -2.0
52,107 - HMPREF1058_RS04365 0.26 -2.7
52,109 - HMPREF1058_RS04365 0.26 -2.1
52,179 + HMPREF1058_RS04365 0.28 -2.6
52,199 - HMPREF1058_RS04365 0.28 -1.6
52,201 - HMPREF1058_RS04365 0.28 -1.8
52,201 - HMPREF1058_RS04365 0.28 -1.6
52,201 - HMPREF1058_RS04365 0.28 +0.3
52,201 - HMPREF1058_RS04365 0.28 -2.9
52,221 - HMPREF1058_RS04365 0.28 -2.4
52,234 + HMPREF1058_RS04365 0.29 -1.4
52,235 - HMPREF1058_RS04365 0.29 -4.2
52,243 + HMPREF1058_RS04365 0.29 +0.3
52,243 + HMPREF1058_RS04365 0.29 -1.4
52,244 - HMPREF1058_RS04365 0.29 -2.5
52,266 + HMPREF1058_RS04365 0.29 -1.2
52,266 + HMPREF1058_RS04365 0.29 -1.4
52,387 - HMPREF1058_RS04365 0.32 -3.1
52,387 - HMPREF1058_RS04365 0.32 -0.1
52,388 + HMPREF1058_RS04365 0.32 -0.9
52,388 + -0.4
52,389 - HMPREF1058_RS04365 0.32 -1.4
52,392 + HMPREF1058_RS04365 0.32 -0.8
52,393 - HMPREF1058_RS04365 0.32 -2.7
52,495 + HMPREF1058_RS04365 0.35 -0.1
52,495 + HMPREF1058_RS04365 0.35 -0.7
52,498 - HMPREF1058_RS04365 0.35 -2.0
52,548 + HMPREF1058_RS04365 0.36 -1.1
52,549 - HMPREF1058_RS04365 0.36 -4.0
52,560 + HMPREF1058_RS04365 0.36 +1.9
52,581 - HMPREF1058_RS04365 0.37 -1.5
52,581 - HMPREF1058_RS04365 0.37 -1.4
52,581 - HMPREF1058_RS04365 0.37 -3.0
52,627 + HMPREF1058_RS04365 0.38 -1.7
52,627 + HMPREF1058_RS04365 0.38 -1.7
52,628 - HMPREF1058_RS04365 0.38 -2.9
52,628 - HMPREF1058_RS04365 0.38 -0.4
52,870 - HMPREF1058_RS04365 0.43 -1.5
52,873 + HMPREF1058_RS04365 0.43 -1.4
52,873 + HMPREF1058_RS04365 0.43 -2.6
52,874 - HMPREF1058_RS04365 0.43 -1.1
52,942 - HMPREF1058_RS04365 0.45 -0.7
52,948 + HMPREF1058_RS04365 0.45 -1.6
52,951 + HMPREF1058_RS04365 0.45 -1.4
53,068 - HMPREF1058_RS04365 0.47 -1.4
53,068 - HMPREF1058_RS04365 0.47 +0.9
53,073 + HMPREF1058_RS04365 0.48 -1.4
53,073 + HMPREF1058_RS04365 0.48 -3.5
53,075 + HMPREF1058_RS04365 0.48 -1.4
53,146 + HMPREF1058_RS04365 0.49 -2.2
53,146 + HMPREF1058_RS04365 0.49 -2.1
53,160 - HMPREF1058_RS04365 0.49 -2.7
53,416 - HMPREF1058_RS04365 0.55 -2.2
53,504 + HMPREF1058_RS04365 0.57 -4.1
53,507 + HMPREF1058_RS04365 0.57 -1.1
53,515 - HMPREF1058_RS04365 0.57 -3.9
53,537 - HMPREF1058_RS04365 0.58 -3.1
53,660 + HMPREF1058_RS04365 0.61 -1.9
53,961 - HMPREF1058_RS04365 0.67 -2.9
53,962 + HMPREF1058_RS04365 0.67 -1.2
53,962 + HMPREF1058_RS04365 0.67 +0.5
53,963 - HMPREF1058_RS04365 0.67 -0.6
53,965 - HMPREF1058_RS04365 0.68 -1.0
53,965 - +0.3
53,981 + HMPREF1058_RS04365 0.68 -0.1
54,003 - HMPREF1058_RS04365 0.68 -0.3
54,003 - HMPREF1058_RS04365 0.68 -0.1
54,004 + HMPREF1058_RS04365 0.68 +0.2
54,018 + HMPREF1058_RS04365 0.69 -0.9
54,034 + HMPREF1058_RS04365 0.69 -1.1
54,034 + HMPREF1058_RS04365 0.69 -1.1
54,034 + HMPREF1058_RS04365 0.69 -2.5
54,035 - HMPREF1058_RS04365 0.69 -1.7
54,058 + HMPREF1058_RS04365 0.70 -0.7
54,400 + HMPREF1058_RS04365 0.77 -1.1
54,401 - HMPREF1058_RS04365 0.77 -0.6
54,405 - HMPREF1058_RS04365 0.77 -3.6
54,425 + HMPREF1058_RS04365 0.78 -0.4
54,658 + HMPREF1058_RS04365 0.83 +0.3
54,921 + HMPREF1058_RS04365 0.89 -3.4
54,923 + HMPREF1058_RS04365 0.89 -2.9
54,928 + HMPREF1058_RS04365 0.89 +0.6
55,113 - +0.9
55,215 - -4.8
55,284 - -1.4
55,316 - -0.6
55,349 - -3.1
55,364 + -1.8
55,376 + -1.5
55,400 + -1.3
55,447 + -1.1
55,561 - HMPREF1058_RS04360 0.15 -0.9
55,562 + HMPREF1058_RS04360 0.15 +0.2
55,563 - HMPREF1058_RS04360 0.15 -0.0
55,563 - HMPREF1058_RS04360 0.15 -0.2
55,563 - HMPREF1058_RS04360 0.15 -0.5
55,563 - HMPREF1058_RS04360 0.15 -1.0
55,701 + HMPREF1058_RS04360 0.40 -1.3
55,772 - HMPREF1058_RS04360 0.52 +0.4
55,779 - HMPREF1058_RS04360 0.54 +0.9
55,782 + HMPREF1058_RS04360 0.54 +0.9
55,804 - HMPREF1058_RS04360 0.58 -0.3
55,818 - HMPREF1058_RS04360 0.60 -0.1
55,923 - HMPREF1058_RS04360 0.79 +0.2
55,952 - HMPREF1058_RS04360 0.84 -2.3
56,048 - -2.1
56,061 + -1.0
56,062 - +0.9
56,295 + -0.3
56,317 + +1.6
56,318 - +1.2
56,318 - -1.0

Or see this region's nucleotide sequence