Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04245

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04250 and HMPREF1058_RS04245 are separated by 12 nucleotidesHMPREF1058_RS04245 and HMPREF1058_RS04240 are separated by 179 nucleotides HMPREF1058_RS04250: HMPREF1058_RS04250 - sensor histidine kinase, at 82,043 to 83,512 _RS04250 HMPREF1058_RS04245: HMPREF1058_RS04245 - hypothetical protein, at 83,525 to 84,652 _RS04245 HMPREF1058_RS04240: HMPREF1058_RS04240 - DUF5131 family protein, at 84,832 to 85,599 _RS04240 Position (kb) 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 82.553 kb on - strand, within HMPREF1058_RS04250at 82.555 kb on + strand, within HMPREF1058_RS04250at 82.583 kb on - strand, within HMPREF1058_RS04250at 82.657 kb on + strand, within HMPREF1058_RS04250at 82.765 kb on - strand, within HMPREF1058_RS04250at 82.765 kb on - strand, within HMPREF1058_RS04250at 82.824 kb on - strand, within HMPREF1058_RS04250at 82.981 kb on + strand, within HMPREF1058_RS04250at 82.984 kb on + strand, within HMPREF1058_RS04250at 83.069 kb on - strand, within HMPREF1058_RS04250at 83.093 kb on - strand, within HMPREF1058_RS04250at 83.134 kb on + strand, within HMPREF1058_RS04250at 83.327 kb on - strand, within HMPREF1058_RS04250at 83.327 kb on - strandat 83.331 kb on - strand, within HMPREF1058_RS04250at 83.331 kb on - strandat 83.332 kb on + strand, within HMPREF1058_RS04250at 83.332 kb on + strand, within HMPREF1058_RS04250at 83.332 kb on + strand, within HMPREF1058_RS04250at 83.332 kb on + strand, within HMPREF1058_RS04250at 83.333 kb on - strand, within HMPREF1058_RS04250at 83.333 kb on - strand, within HMPREF1058_RS04250at 83.352 kb on + strand, within HMPREF1058_RS04250at 83.352 kb on + strand, within HMPREF1058_RS04250at 83.353 kb on - strand, within HMPREF1058_RS04250at 83.353 kb on - strand, within HMPREF1058_RS04250at 83.355 kb on - strand, within HMPREF1058_RS04250at 83.364 kb on - strand, within HMPREF1058_RS04250at 83.504 kb on + strandat 83.504 kb on + strandat 83.505 kb on - strandat 83.636 kb on - strandat 83.676 kb on - strand, within HMPREF1058_RS04245at 83.749 kb on + strand, within HMPREF1058_RS04245at 83.753 kb on + strand, within HMPREF1058_RS04245at 83.778 kb on - strand, within HMPREF1058_RS04245at 83.830 kb on + strand, within HMPREF1058_RS04245at 83.900 kb on - strand, within HMPREF1058_RS04245at 84.038 kb on - strand, within HMPREF1058_RS04245at 84.119 kb on + strand, within HMPREF1058_RS04245at 84.120 kb on - strand, within HMPREF1058_RS04245at 84.120 kb on - strand, within HMPREF1058_RS04245at 84.120 kb on - strand, within HMPREF1058_RS04245at 84.219 kb on - strand, within HMPREF1058_RS04245at 84.219 kb on - strand, within HMPREF1058_RS04245at 84.251 kb on + strand, within HMPREF1058_RS04245at 84.253 kb on + strand, within HMPREF1058_RS04245at 84.275 kb on + strand, within HMPREF1058_RS04245at 84.276 kb on - strand, within HMPREF1058_RS04245at 84.319 kb on + strand, within HMPREF1058_RS04245at 84.320 kb on - strand, within HMPREF1058_RS04245at 84.336 kb on - strand, within HMPREF1058_RS04245at 84.356 kb on + strand, within HMPREF1058_RS04245at 84.449 kb on - strand, within HMPREF1058_RS04245at 84.489 kb on - strand, within HMPREF1058_RS04245at 84.495 kb on - strand, within HMPREF1058_RS04245at 84.500 kb on + strand, within HMPREF1058_RS04245at 84.501 kb on - strand, within HMPREF1058_RS04245at 84.630 kb on - strandat 84.668 kb on - strandat 84.697 kb on + strandat 84.729 kb on - strandat 84.730 kb on + strandat 84.731 kb on - strandat 84.765 kb on - strandat 84.842 kb on + strandat 84.847 kb on - strandat 84.847 kb on - strandat 84.875 kb on - strandat 84.897 kb on + strandat 84.917 kb on - strand, within HMPREF1058_RS04240at 84.941 kb on - strand, within HMPREF1058_RS04240at 84.976 kb on + strand, within HMPREF1058_RS04240at 84.976 kb on + strand, within HMPREF1058_RS04240at 84.977 kb on - strand, within HMPREF1058_RS04240at 84.991 kb on - strand, within HMPREF1058_RS04240at 85.026 kb on + strand, within HMPREF1058_RS04240at 85.030 kb on + strand, within HMPREF1058_RS04240at 85.030 kb on + strand, within HMPREF1058_RS04240at 85.030 kb on + strand, within HMPREF1058_RS04240at 85.031 kb on - strand, within HMPREF1058_RS04240at 85.032 kb on + strand, within HMPREF1058_RS04240at 85.032 kb on + strand, within HMPREF1058_RS04240at 85.083 kb on + strand, within HMPREF1058_RS04240at 85.106 kb on - strandat 85.106 kb on - strand, within HMPREF1058_RS04240at 85.225 kb on - strand, within HMPREF1058_RS04240at 85.274 kb on - strand, within HMPREF1058_RS04240at 85.336 kb on + strand, within HMPREF1058_RS04240at 85.336 kb on + strand, within HMPREF1058_RS04240at 85.389 kb on - strand, within HMPREF1058_RS04240at 85.389 kb on - strand, within HMPREF1058_RS04240at 85.415 kb on + strand, within HMPREF1058_RS04240at 85.494 kb on + strand, within HMPREF1058_RS04240at 85.510 kb on + strand, within HMPREF1058_RS04240at 85.510 kb on + strand, within HMPREF1058_RS04240at 85.510 kb on - strand, within HMPREF1058_RS04240at 85.511 kb on - strand, within HMPREF1058_RS04240at 85.514 kb on + strand, within HMPREF1058_RS04240at 85.514 kb on + strand, within HMPREF1058_RS04240at 85.515 kb on - strand, within HMPREF1058_RS04240at 85.537 kb on + strandat 85.586 kb on - strandat 85.586 kb on - strandat 85.611 kb on - strandat 85.635 kb on + strandat 85.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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82,553 - HMPREF1058_RS04250 0.35 -0.8
82,555 + HMPREF1058_RS04250 0.35 +0.4
82,583 - HMPREF1058_RS04250 0.37 +0.2
82,657 + HMPREF1058_RS04250 0.42 -0.3
82,765 - HMPREF1058_RS04250 0.49 -1.0
82,765 - HMPREF1058_RS04250 0.49 +1.0
82,824 - HMPREF1058_RS04250 0.53 +0.2
82,981 + HMPREF1058_RS04250 0.64 +0.5
82,984 + HMPREF1058_RS04250 0.64 -0.4
83,069 - HMPREF1058_RS04250 0.70 +0.3
83,093 - HMPREF1058_RS04250 0.71 -0.4
83,134 + HMPREF1058_RS04250 0.74 +1.6
83,327 - HMPREF1058_RS04250 0.87 -0.4
83,327 - -1.4
83,331 - HMPREF1058_RS04250 0.88 -1.7
83,331 - -1.4
83,332 + HMPREF1058_RS04250 0.88 -0.4
83,332 + HMPREF1058_RS04250 0.88 -2.0
83,332 + HMPREF1058_RS04250 0.88 -0.7
83,332 + HMPREF1058_RS04250 0.88 -0.8
83,333 - HMPREF1058_RS04250 0.88 +1.9
83,333 - HMPREF1058_RS04250 0.88 +0.3
83,352 + HMPREF1058_RS04250 0.89 -0.3
83,352 + HMPREF1058_RS04250 0.89 +1.7
83,353 - HMPREF1058_RS04250 0.89 -0.9
83,353 - HMPREF1058_RS04250 0.89 +0.5
83,355 - HMPREF1058_RS04250 0.89 +0.5
83,364 - HMPREF1058_RS04250 0.90 -2.9
83,504 + +0.4
83,504 + -2.4
83,505 - +0.7
83,636 - +0.6
83,676 - HMPREF1058_RS04245 0.13 -0.6
83,749 + HMPREF1058_RS04245 0.20 +0.0
83,753 + HMPREF1058_RS04245 0.20 -1.4
83,778 - HMPREF1058_RS04245 0.22 +0.9
83,830 + HMPREF1058_RS04245 0.27 +0.5
83,900 - HMPREF1058_RS04245 0.33 +0.5
84,038 - HMPREF1058_RS04245 0.45 -0.4
84,119 + HMPREF1058_RS04245 0.53 +0.5
84,120 - HMPREF1058_RS04245 0.53 +1.7
84,120 - HMPREF1058_RS04245 0.53 +0.1
84,120 - HMPREF1058_RS04245 0.53 -1.8
84,219 - HMPREF1058_RS04245 0.62 +0.3
84,219 - HMPREF1058_RS04245 0.62 +0.7
84,251 + HMPREF1058_RS04245 0.64 +0.7
84,253 + HMPREF1058_RS04245 0.65 -0.1
84,275 + HMPREF1058_RS04245 0.66 +0.5
84,276 - HMPREF1058_RS04245 0.67 -0.7
84,319 + HMPREF1058_RS04245 0.70 +1.7
84,320 - HMPREF1058_RS04245 0.70 -0.3
84,336 - HMPREF1058_RS04245 0.72 +0.6
84,356 + HMPREF1058_RS04245 0.74 +0.3
84,449 - HMPREF1058_RS04245 0.82 +0.3
84,489 - HMPREF1058_RS04245 0.85 -1.6
84,495 - HMPREF1058_RS04245 0.86 +1.8
84,500 + HMPREF1058_RS04245 0.86 +1.1
84,501 - HMPREF1058_RS04245 0.87 -0.1
84,630 - +0.6
84,668 - +0.1
84,697 + -0.7
84,729 - +0.2
84,730 + -0.1
84,731 - -0.7
84,765 - -1.1
84,842 + +0.3
84,847 - +0.0
84,847 - +0.5
84,875 - -0.1
84,897 + +1.6
84,917 - HMPREF1058_RS04240 0.11 +0.4
84,941 - HMPREF1058_RS04240 0.14 +0.1
84,976 + HMPREF1058_RS04240 0.19 -0.5
84,976 + HMPREF1058_RS04240 0.19 -2.4
84,977 - HMPREF1058_RS04240 0.19 -1.3
84,991 - HMPREF1058_RS04240 0.21 +0.0
85,026 + HMPREF1058_RS04240 0.25 -0.9
85,030 + HMPREF1058_RS04240 0.26 +1.9
85,030 + HMPREF1058_RS04240 0.26 +0.7
85,030 + HMPREF1058_RS04240 0.26 -0.1
85,031 - HMPREF1058_RS04240 0.26 -1.8
85,032 + HMPREF1058_RS04240 0.26 -0.6
85,032 + HMPREF1058_RS04240 0.26 +0.2
85,083 + HMPREF1058_RS04240 0.33 +0.9
85,106 - +2.2
85,106 - HMPREF1058_RS04240 0.36 +1.3
85,225 - HMPREF1058_RS04240 0.51 -0.6
85,274 - HMPREF1058_RS04240 0.58 -0.5
85,336 + HMPREF1058_RS04240 0.66 +0.2
85,336 + HMPREF1058_RS04240 0.66 -1.8
85,389 - HMPREF1058_RS04240 0.73 +0.9
85,389 - HMPREF1058_RS04240 0.73 +2.1
85,415 + HMPREF1058_RS04240 0.76 -0.8
85,494 + HMPREF1058_RS04240 0.86 +0.6
85,510 + HMPREF1058_RS04240 0.88 +1.2
85,510 + HMPREF1058_RS04240 0.88 +1.3
85,510 - HMPREF1058_RS04240 0.88 +1.9
85,511 - HMPREF1058_RS04240 0.88 -2.8
85,514 + HMPREF1058_RS04240 0.89 +1.7
85,514 + HMPREF1058_RS04240 0.89 +0.2
85,515 - HMPREF1058_RS04240 0.89 -0.4
85,537 + -0.7
85,586 - -2.7
85,586 - -0.8
85,611 - +1.2
85,635 + +1.6
85,635 + +0.4

Or see this region's nucleotide sequence