Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04185 and HMPREF1058_RS04180 are separated by 273 nucleotides HMPREF1058_RS04180 and HMPREF1058_RS04175 are separated by 13 nucleotides HMPREF1058_RS04175 and HMPREF1058_RS04170 are separated by 33 nucleotides
HMPREF1058_RS04185: HMPREF1058_RS04185 - hypothetical protein, at 98,931 to 99,632
_RS04185
HMPREF1058_RS04180: HMPREF1058_RS04180 - K(+)-transporting ATPase subunit C, at 99,906 to 100,475
_RS04180
HMPREF1058_RS04175: HMPREF1058_RS04175 - potassium-transporting ATPase subunit KdpB, at 100,489 to 102,522
_RS04175
HMPREF1058_RS04170: HMPREF1058_RS04170 - potassium-transporting ATPase subunit KdpA, at 102,556 to 104,262
_RS04170
Position (kb) 100
101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 99.670 kb on + strand at 99.670 kb on + strand at 99.802 kb on - strand at 99.886 kb on + strand at 99.893 kb on + strand at 99.896 kb on - strand at 100.005 kb on - strand, within HMPREF1058_RS04180 at 100.169 kb on + strand, within HMPREF1058_RS04180 at 100.198 kb on + strand, within HMPREF1058_RS04180 at 100.221 kb on - strand, within HMPREF1058_RS04180 at 100.221 kb on - strand, within HMPREF1058_RS04180 at 100.290 kb on - strand, within HMPREF1058_RS04180 at 100.326 kb on + strand, within HMPREF1058_RS04180 at 100.404 kb on + strand, within HMPREF1058_RS04180 at 100.405 kb on - strand, within HMPREF1058_RS04180 at 100.409 kb on + strand at 100.411 kb on + strand, within HMPREF1058_RS04180 at 100.411 kb on + strand, within HMPREF1058_RS04180 at 100.412 kb on - strand, within HMPREF1058_RS04180 at 100.412 kb on - strand, within HMPREF1058_RS04180 at 100.416 kb on + strand, within HMPREF1058_RS04180 at 100.491 kb on - strand at 100.504 kb on + strand at 100.505 kb on - strand at 100.510 kb on + strand at 100.545 kb on + strand at 100.555 kb on + strand at 100.556 kb on - strand at 100.565 kb on - strand at 100.645 kb on - strand at 100.683 kb on + strand at 100.714 kb on - strand, within HMPREF1058_RS04175 at 100.813 kb on - strand at 101.027 kb on + strand, within HMPREF1058_RS04175 at 101.027 kb on + strand, within HMPREF1058_RS04175 at 101.028 kb on - strand, within HMPREF1058_RS04175 at 101.028 kb on - strand, within HMPREF1058_RS04175 at 101.028 kb on - strand, within HMPREF1058_RS04175 at 101.071 kb on + strand, within HMPREF1058_RS04175 at 101.092 kb on - strand, within HMPREF1058_RS04175 at 101.093 kb on + strand, within HMPREF1058_RS04175 at 101.093 kb on + strand, within HMPREF1058_RS04175 at 101.094 kb on - strand, within HMPREF1058_RS04175 at 101.377 kb on - strand, within HMPREF1058_RS04175 at 101.415 kb on + strand, within HMPREF1058_RS04175 at 101.415 kb on + strand, within HMPREF1058_RS04175 at 101.416 kb on - strand, within HMPREF1058_RS04175 at 101.440 kb on - strand, within HMPREF1058_RS04175 at 101.507 kb on - strand, within HMPREF1058_RS04175 at 101.590 kb on + strand, within HMPREF1058_RS04175 at 101.629 kb on + strand, within HMPREF1058_RS04175 at 101.630 kb on - strand, within HMPREF1058_RS04175 at 101.632 kb on - strand, within HMPREF1058_RS04175 at 101.733 kb on + strand, within HMPREF1058_RS04175 at 101.796 kb on + strand, within HMPREF1058_RS04175 at 101.814 kb on + strand, within HMPREF1058_RS04175 at 101.824 kb on - strand, within HMPREF1058_RS04175 at 101.959 kb on + strand, within HMPREF1058_RS04175 at 102.115 kb on + strand, within HMPREF1058_RS04175 at 102.165 kb on + strand, within HMPREF1058_RS04175 at 102.333 kb on + strand at 102.334 kb on - strand at 102.387 kb on + strand at 102.387 kb on + strand at 102.414 kb on + strand at 102.415 kb on - strand at 102.523 kb on - strand at 102.532 kb on + strand at 102.610 kb on + strand at 102.854 kb on + strand, within HMPREF1058_RS04170 at 102.970 kb on + strand at 102.991 kb on + strand, within HMPREF1058_RS04170 at 103.036 kb on - strand, within HMPREF1058_RS04170 at 103.095 kb on + strand, within HMPREF1058_RS04170 at 103.098 kb on + strand, within HMPREF1058_RS04170 at 103.099 kb on - strand, within HMPREF1058_RS04170 at 103.104 kb on + strand, within HMPREF1058_RS04170 at 103.104 kb on + strand, within HMPREF1058_RS04170 at 103.105 kb on - strand, within HMPREF1058_RS04170 at 103.129 kb on + strand, within HMPREF1058_RS04170 at 103.130 kb on - strand, within HMPREF1058_RS04170 at 103.206 kb on + strand, within HMPREF1058_RS04170 at 103.230 kb on + strand, within HMPREF1058_RS04170 at 103.236 kb on + strand, within HMPREF1058_RS04170 at 103.239 kb on + strand, within HMPREF1058_RS04170 at 103.240 kb on - strand, within HMPREF1058_RS04170 at 103.246 kb on - strand, within HMPREF1058_RS04170 at 103.316 kb on - strand, within HMPREF1058_RS04170 at 103.368 kb on + strand, within HMPREF1058_RS04170 at 103.414 kb on - strand, within HMPREF1058_RS04170 at 103.471 kb on + strand, within HMPREF1058_RS04170 at 103.511 kb on + strand, within HMPREF1058_RS04170
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 99,670 + +1.6 99,670 + +0.7 99,802 - +1.2 99,886 + -0.8 99,893 + -0.0 99,896 - +0.1 100,005 - HMPREF1058_RS04180 0.17 -0.2 100,169 + HMPREF1058_RS04180 0.46 -0.4 100,198 + HMPREF1058_RS04180 0.51 +0.3 100,221 - HMPREF1058_RS04180 0.55 +0.9 100,221 - HMPREF1058_RS04180 0.55 -0.8 100,290 - HMPREF1058_RS04180 0.67 -0.6 100,326 + HMPREF1058_RS04180 0.74 +0.2 100,404 + HMPREF1058_RS04180 0.87 -2.4 100,405 - HMPREF1058_RS04180 0.88 +0.4 100,409 + -1.4 100,411 + HMPREF1058_RS04180 0.89 -0.1 100,411 + HMPREF1058_RS04180 0.89 +0.5 100,412 - HMPREF1058_RS04180 0.89 -3.1 100,412 - HMPREF1058_RS04180 0.89 -2.7 100,416 + HMPREF1058_RS04180 0.89 +0.6 100,491 - +0.9 100,504 + +1.4 100,505 - -0.6 100,510 + +1.4 100,545 + +0.4 100,555 + +0.4 100,556 - -1.1 100,565 - -0.0 100,645 - -1.1 100,683 + +0.3 100,714 - HMPREF1058_RS04175 0.11 -1.0 100,813 - -2.0 101,027 + HMPREF1058_RS04175 0.26 +0.5 101,027 + HMPREF1058_RS04175 0.26 +0.5 101,028 - HMPREF1058_RS04175 0.26 -0.6 101,028 - HMPREF1058_RS04175 0.26 -1.6 101,028 - HMPREF1058_RS04175 0.26 -0.6 101,071 + HMPREF1058_RS04175 0.29 +0.5 101,092 - HMPREF1058_RS04175 0.30 -0.6 101,093 + HMPREF1058_RS04175 0.30 +0.4 101,093 + HMPREF1058_RS04175 0.30 -0.9 101,094 - HMPREF1058_RS04175 0.30 -0.8 101,377 - HMPREF1058_RS04175 0.44 -1.2 101,415 + HMPREF1058_RS04175 0.46 -0.3 101,415 + HMPREF1058_RS04175 0.46 +0.9 101,416 - HMPREF1058_RS04175 0.46 -3.2 101,440 - HMPREF1058_RS04175 0.47 -2.8 101,507 - HMPREF1058_RS04175 0.50 +1.2 101,590 + HMPREF1058_RS04175 0.54 +0.6 101,629 + HMPREF1058_RS04175 0.56 -0.1 101,630 - HMPREF1058_RS04175 0.56 -1.3 101,632 - HMPREF1058_RS04175 0.56 -2.4 101,733 + HMPREF1058_RS04175 0.61 +1.9 101,796 + HMPREF1058_RS04175 0.64 -0.4 101,814 + HMPREF1058_RS04175 0.65 -0.1 101,824 - HMPREF1058_RS04175 0.66 -1.3 101,959 + HMPREF1058_RS04175 0.72 -1.9 102,115 + HMPREF1058_RS04175 0.80 -0.3 102,165 + HMPREF1058_RS04175 0.82 +1.2 102,333 + +1.6 102,334 - -0.1 102,387 + -0.1 102,387 + +1.4 102,414 + +1.9 102,415 - +0.5 102,523 - +0.2 102,532 + +2.0 102,610 + -0.9 102,854 + HMPREF1058_RS04170 0.17 -0.4 102,970 + -0.1 102,991 + HMPREF1058_RS04170 0.25 +0.4 103,036 - HMPREF1058_RS04170 0.28 -1.2 103,095 + HMPREF1058_RS04170 0.32 -1.8 103,098 + HMPREF1058_RS04170 0.32 +0.9 103,099 - HMPREF1058_RS04170 0.32 -1.2 103,104 + HMPREF1058_RS04170 0.32 +1.2 103,104 + HMPREF1058_RS04170 0.32 +0.5 103,105 - HMPREF1058_RS04170 0.32 +0.0 103,129 + HMPREF1058_RS04170 0.34 +1.3 103,130 - HMPREF1058_RS04170 0.34 +0.0 103,206 + HMPREF1058_RS04170 0.38 -1.1 103,230 + HMPREF1058_RS04170 0.39 -0.2 103,236 + HMPREF1058_RS04170 0.40 -0.7 103,239 + HMPREF1058_RS04170 0.40 -0.2 103,240 - HMPREF1058_RS04170 0.40 -0.7 103,246 - HMPREF1058_RS04170 0.40 -1.8 103,316 - HMPREF1058_RS04170 0.45 -0.9 103,368 + HMPREF1058_RS04170 0.48 +1.0 103,414 - HMPREF1058_RS04170 0.50 -0.7 103,471 + HMPREF1058_RS04170 0.54 +1.3 103,511 + HMPREF1058_RS04170 0.56 +1.2
Or see this region's nucleotide sequence