Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03550 and HMPREF1058_RS03545 are separated by 36 nucleotides HMPREF1058_RS03545 and HMPREF1058_RS03540 are separated by 115 nucleotides
HMPREF1058_RS03550: HMPREF1058_RS03550 - AAA family ATPase, at 249,205 to 250,977
_RS03550
HMPREF1058_RS03545: HMPREF1058_RS03545 - sigma-54-dependent Fis family transcriptional regulator, at 251,014 to 252,354
_RS03545
HMPREF1058_RS03540: HMPREF1058_RS03540 - sensor histidine kinase, at 252,470 to 253,771
_RS03540
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 250.445 kb on + strand, within HMPREF1058_RS03550 at 250.445 kb on + strand, within HMPREF1058_RS03550 at 250.445 kb on + strand, within HMPREF1058_RS03550 at 250.447 kb on + strand, within HMPREF1058_RS03550 at 250.453 kb on + strand, within HMPREF1058_RS03550 at 250.453 kb on + strand, within HMPREF1058_RS03550 at 250.468 kb on + strand, within HMPREF1058_RS03550 at 250.552 kb on + strand, within HMPREF1058_RS03550 at 250.666 kb on + strand, within HMPREF1058_RS03550 at 250.759 kb on + strand, within HMPREF1058_RS03550 at 250.759 kb on + strand, within HMPREF1058_RS03550 at 250.766 kb on + strand, within HMPREF1058_RS03550 at 250.949 kb on + strand at 250.949 kb on + strand at 250.952 kb on + strand at 250.953 kb on - strand at 250.955 kb on - strand at 250.975 kb on + strand at 250.975 kb on + strand at 250.975 kb on + strand at 251.442 kb on + strand, within HMPREF1058_RS03545 at 251.442 kb on + strand, within HMPREF1058_RS03545 at 251.602 kb on - strand, within HMPREF1058_RS03545 at 251.665 kb on - strand, within HMPREF1058_RS03545 at 251.783 kb on + strand, within HMPREF1058_RS03545 at 251.850 kb on - strand, within HMPREF1058_RS03545 at 251.850 kb on - strand, within HMPREF1058_RS03545 at 251.850 kb on - strand at 251.934 kb on + strand, within HMPREF1058_RS03545 at 251.979 kb on + strand, within HMPREF1058_RS03545 at 251.982 kb on + strand, within HMPREF1058_RS03545 at 252.151 kb on - strand, within HMPREF1058_RS03545 at 252.327 kb on + strand at 252.328 kb on - strand at 252.330 kb on + strand at 252.330 kb on + strand at 252.358 kb on - strand at 252.432 kb on + strand at 252.464 kb on + strand at 252.464 kb on + strand at 252.496 kb on + strand at 252.531 kb on + strand at 252.565 kb on - strand at 252.633 kb on + strand, within HMPREF1058_RS03540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 250,445 + HMPREF1058_RS03550 0.70 -0.6 250,445 + HMPREF1058_RS03550 0.70 +0.1 250,445 + HMPREF1058_RS03550 0.70 -0.6 250,447 + HMPREF1058_RS03550 0.70 -0.1 250,453 + HMPREF1058_RS03550 0.70 +0.0 250,453 + HMPREF1058_RS03550 0.70 +0.7 250,468 + HMPREF1058_RS03550 0.71 -0.3 250,552 + HMPREF1058_RS03550 0.76 -2.5 250,666 + HMPREF1058_RS03550 0.82 -0.5 250,759 + HMPREF1058_RS03550 0.88 -2.2 250,759 + HMPREF1058_RS03550 0.88 -2.3 250,766 + HMPREF1058_RS03550 0.88 -0.3 250,949 + -1.1 250,949 + -0.0 250,952 + -2.5 250,953 - -1.1 250,955 - -1.1 250,975 + -0.7 250,975 + +0.9 250,975 + -2.4 251,442 + HMPREF1058_RS03545 0.32 -0.7 251,442 + HMPREF1058_RS03545 0.32 -1.8 251,602 - HMPREF1058_RS03545 0.44 -2.5 251,665 - HMPREF1058_RS03545 0.49 -1.8 251,783 + HMPREF1058_RS03545 0.57 +0.1 251,850 - HMPREF1058_RS03545 0.62 +0.3 251,850 - HMPREF1058_RS03545 0.62 -1.7 251,850 - -1.3 251,934 + HMPREF1058_RS03545 0.69 -0.8 251,979 + HMPREF1058_RS03545 0.72 -2.5 251,982 + HMPREF1058_RS03545 0.72 -2.6 252,151 - HMPREF1058_RS03545 0.85 -1.1 252,327 + -1.3 252,328 - +0.9 252,330 + -0.6 252,330 + -2.6 252,358 - -0.4 252,432 + -0.8 252,464 + -0.4 252,464 + -0.3 252,496 + -1.0 252,531 + +0.4 252,565 - -1.1 252,633 + HMPREF1058_RS03540 0.13 -0.4
Or see this region's nucleotide sequence